Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D08
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    27   4.9  
04_04_1119 + 31034136-31034385,31035360-31035508                       26   6.4  
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    26   6.4  
04_04_1695 + 35433975-35437040                                         26   8.5  

>05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,
            2787114-2787176,2787299-2787397,2787726-2787884,
            2788420-2788491,2788567-2788699,2788813-2788877,
            2789016-2789091,2789236-2789337,2789524-2789716,
            2790576-2790654,2792939-2793007,2793261-2793311,
            2793680-2793742,2793926-2794041,2794263-2794347,
            2794898-2794957,2795594-2795639,2796011-2796084,
            2796350-2796400,2796474-2796674,2796747-2796791,
            2797063-2797156,2797226-2797371,2797510-2797739,
            2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 52   MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQV 207
            M     S ++   R       A K L RL+K +   D + P E+E  E+D V
Sbjct: 935  MLSDALSHYQSALRINPHNEAAKKGLERLEKQMKGVDPDAPEEDEENEADDV 986


>04_04_1119 + 31034136-31034385,31035360-31035508
          Length = 132

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +1

Query: 52  MAKSLRSRWKRKCRAIKRE----RYAVKELARL 138
           MAKSLRS+ +++ R ++RE     Y  KE A+L
Sbjct: 1   MAKSLRSKREKRLRTLRREIAQPFYDKKEAAKL 33


>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 55  AKSLRSRWKRKCRAIKRERYAV 120
           A S  S ++RK RA++RE+Y +
Sbjct: 108 ALSSTSEYRRKLRAVRREKYQI 129


>04_04_1695 + 35433975-35437040
          Length = 1021

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 43  RITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVK 159
           R  +AKS+ ++W    RA+  +  A  E  +LK     K
Sbjct: 544 RNDLAKSIEAKWFSLSRALTADEAAAAEATKLKSSFASK 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,940,565
Number of Sequences: 37544
Number of extensions: 108648
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)