Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D08
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20134| Best HMM Match : SASP_gamma (HMM E-Value=5.6) 41 2e-04
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.71
SB_53028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.94
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 27 3.8
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_27517| Best HMM Match : TolA (HMM E-Value=0.25) 27 5.0
SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14) 26 6.6
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 26 6.6
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 26 8.8
SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08) 26 8.8
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 26 8.8
>SB_20134| Best HMM Match : SASP_gamma (HMM E-Value=5.6)
Length = 126
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKD 162
MAKSLRS+WKRK RA KR++ K +L M+G D
Sbjct: 1 MAKSLRSKWKRKMRAEKRKKNKEKVKQKLLDMVGTTD 37
>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 29.5 bits (63), Expect = 0.71
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 43 RITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESD 201
+ ++ + R KR+ R RER AVK++A + + LG+ ++KP + D
Sbjct: 1043 KFVLSFTFREAQKRR-RECLRERIAVKDIAFVVRSLGLMRKSKPVNQGLSSQD 1094
>SB_53028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.1 bits (62), Expect = 0.94
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 61 SLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLDAGA 228
SL S W C + +RE+ + +L+ + + K + N+ E+ ++ AG+
Sbjct: 125 SLNSSWGHCCLSSRREQVLAADATQLELHTKAQQQCKAASNKPRETPTIVITSAGS 180
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 61 SLRSRWKRKCRAIKRERYAVKE-LARLKKML 150
SLRSRW ++ ++ E+ VKE L +L ++L
Sbjct: 713 SLRSRWSKRVHSLIDEKTRVKEKLRKLNRIL 743
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 4 TRSKSTSHKYFNLRITMAKSLRSRWKR 84
T S +T + F R+T+++SLR+ W++
Sbjct: 167 TLSPATDQEEFESRVTISESLRTVWEK 193
>SB_27517| Best HMM Match : TolA (HMM E-Value=0.25)
Length = 492
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 49 TMAKSLRSRWKRKCRAIKRERYAV-KELARLKKMLGVKDENKPSEN 183
T+ R + K + + +K E+ + KEL + KK + NK SEN
Sbjct: 55 TLHTKKRKKKKTELQKLKHEKKKILKELKQTKKCIKEDSANKESEN 100
>SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14)
Length = 189
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 91 RAIKRERYAVKELARLKKMLGVKDENKPSENEVME 195
R +K RY + ++K + +KD NK N +E
Sbjct: 32 RHLKYSRYTPNNMQSIQKTITLKDVNKRRANHALE 66
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 7 RSKSTSHKYFNLRITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKD-ENKPSEN 183
R K S++ +++ T A+ ++ + +RE KE+A+LKK+ +++ K E+
Sbjct: 752 RLKQLSNEVSDMKKTKARLMKQMKDEVAKNKQRESARNKEIAQLKKVSRMREIAIKNLES 811
Query: 184 EVMESDQVI 210
E + D ++
Sbjct: 812 EKRQKDIIL 820
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 181 NEVMESDQVIFLDAGAL 231
N VM+SD+V+ LDAG L
Sbjct: 1083 NTVMDSDRVMVLDAGRL 1099
>SB_12611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 46 ITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGV 156
+ + S ++RWKR+ R R +++A K++GV
Sbjct: 216 LRLLSSFKTRWKRRELIAGRARQDRRDVAACAKLVGV 252
>SB_45871| Best HMM Match : ABC_tran (HMM E-Value=2.5e-08)
Length = 435
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 181 NEVMESDQVIFLDAGAL 231
N VM+SD+V+ LDAG L
Sbjct: 114 NTVMDSDRVMVLDAGRL 130
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 55 AKSLRSRWKRKCRAIKRERYAVKELARLKKM 147
A+ R R++R+ R ++ER + +ARL+++
Sbjct: 1024 ARRKRMRFRRRARRKRKERRIGRRIARLRRL 1054
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,060
Number of Sequences: 59808
Number of extensions: 134548
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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