Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D08
         (334 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107780-1|AAI07781.1|  129|Homo sapiens chromosome 12 open read...    47   2e-05
BC070232-1|AAH70232.1|  129|Homo sapiens chromosome 12 open read...    47   2e-05
BC006002-1|AAH06002.1|  129|Homo sapiens chromosome 12 open read...    47   2e-05
AK091568-1|BAC03699.1|  129|Homo sapiens protein ( Homo sapiens ...    47   2e-05
M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1 s...    28   6.0  
M76558-1|AAA58402.1| 2161|Homo sapiens calcium channel alpha-1D ...    28   6.0  
D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium...    28   6.0  
AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel, voltag...    28   6.0  
BC068485-1|AAH68485.1|  383|Homo sapiens WD repeat domain 55 pro...    28   7.9  
AK025355-1|BAB15118.1|  383|Homo sapiens protein ( Homo sapiens ...    28   7.9  
AK000202-1|BAA91006.1|  165|Homo sapiens protein ( Homo sapiens ...    28   7.9  

>BC107780-1|AAI07781.1|  129|Homo sapiens chromosome 12 open reading
           frame 31 protein.
          Length = 129

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +1

Query: 52  MAKSLRSRWKRKCRAIKRERYAVKELARLKKML 150
           MAKSLRS+WKRK RA KR++ A KE +RLK +L
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSIL 33


>BC070232-1|AAH70232.1|  129|Homo sapiens chromosome 12 open reading
           frame 31 protein.
          Length = 129

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +1

Query: 52  MAKSLRSRWKRKCRAIKRERYAVKELARLKKML 150
           MAKSLRS+WKRK RA KR++ A KE +RLK +L
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSIL 33


>BC006002-1|AAH06002.1|  129|Homo sapiens chromosome 12 open reading
           frame 31 protein.
          Length = 129

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +1

Query: 52  MAKSLRSRWKRKCRAIKRERYAVKELARLKKML 150
           MAKSLRS+WKRK RA KR++ A KE +RLK +L
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSIL 33


>AK091568-1|BAC03699.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34249 fis, clone FCBBF4000500. ).
          Length = 129

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +1

Query: 52  MAKSLRSRWKRKCRAIKRERYAVKELARLKKML 150
           MAKSLRS+WKRK RA KR++ A KE +RLK +L
Sbjct: 1   MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSIL 33


>M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1
           subunit protein.
          Length = 2181

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 55  AKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLD 219
           A+SL +  K +  A ++ER   K++AR K+ L  K  NKP  N++  SD  + +D
Sbjct: 778 AESLNTAQKEE--AEEKER---KKIAR-KESLENKKNNKPEVNQIANSDNKVTID 826


>M76558-1|AAA58402.1| 2161|Homo sapiens calcium channel alpha-1D
           subunit protein.
          Length = 2161

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 55  AKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLD 219
           A+SL +  K +  A ++ER   K++AR K+ L  K  NKP  N++  SD  + +D
Sbjct: 758 AESLNTAQKEE--AEEKER---KKIAR-KESLENKKNNKPEVNQIANSDNKVTID 806


>D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium
           channel alpha1 subunit, CACN4 protein.
          Length = 2170

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 55  AKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLD 219
           A+SL +  K +  A ++ER   K++AR K+ L  K  NKP  N++  SD  + +D
Sbjct: 769 AESLNTAQKEE--AEEKER---KKIAR-KESLENKKNNKPEVNQIANSDNKVTID 817


>AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel,
           voltage-dependent, L type, alpha 1D subunit variant
           protein.
          Length = 1854

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +1

Query: 55  AKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLD 219
           A+SL +  K +  A ++ER   K++AR K+ L  K  NKP  N++  SD  + +D
Sbjct: 451 AESLNTAQKEE--AEEKER---KKIAR-KESLENKKNNKPEVNQIANSDNKVTID 499


>BC068485-1|AAH68485.1|  383|Homo sapiens WD repeat domain 55
           protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 QRMRLWNRIKLYSWTLEP*RRGKRNRSPLKR-KTKTW 283
           QR++ W+  +L +  ++  RR K+   PL+   +KTW
Sbjct: 317 QRLKFWDMAQLRAVVVDDYRRRKKKGGPLRALSSKTW 353


>AK025355-1|BAB15118.1|  383|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21702 fis, clone COL09874. ).
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 QRMRLWNRIKLYSWTLEP*RRGKRNRSPLKR-KTKTW 283
           QR++ W+  +L +  ++  RR K+   PL+   +KTW
Sbjct: 317 QRLKFWDMAQLRAVVVDDYRRRKKKGGPLRALSSKTW 353


>AK000202-1|BAA91006.1|  165|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20195 fis, clone COLF0930. ).
          Length = 165

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 QRMRLWNRIKLYSWTLEP*RRGKRNRSPLKR-KTKTW 283
           QR++ W+  +L +  ++  RR K+   PL+   +KTW
Sbjct: 99  QRLKFWDMAQLRAVVVDDYRRRKKKGGPLRALSSKTW 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,888,975
Number of Sequences: 237096
Number of extensions: 599454
Number of successful extensions: 1047
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)