Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D08
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 41 2e-04
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 29 0.81
Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 29 0.81
Z46267-13|CAH04746.1| 845|Caenorhabditis elegans Hypothetical p... 29 0.81
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z68301-7|CAA92627.2| 364|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 28 1.4
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 27 2.5
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 27 2.5
Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical pr... 26 5.7
U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulph... 26 5.7
U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone... 26 7.5
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 25 10.0
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESD 201
MAKSLRS++KR+ RAI R + K A L+K + +DE + + E ++D
Sbjct: 1 MAKSLRSKFKRRVRAIARTKKEPKTAALLQKAIDKRDEYEKQDAEKTKTD 50
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 1050 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 1098
>Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5i protein.
Length = 1030
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 980 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 1028
>Z46267-13|CAH04746.1| 845|Caenorhabditis elegans Hypothetical
protein F49E2.5h protein.
Length = 845
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 795 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 843
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 839 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 887
>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical protein
F49E2.5c protein.
Length = 1030
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 980 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 1028
>Z46267-7|CAA86429.2| 947|Caenorhabditis elegans Hypothetical protein
F49E2.5b protein.
Length = 947
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 897 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 945
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical protein
F49E2.5a protein.
Length = 1215
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMES 198
MA R+ +K RA++R+ KE L K+EN+P E + E+
Sbjct: 1165 MAADERNIFKDTSRALQRKIRIFKESPHYHTYLRAKEENRPIEEVIAEA 1213
>Z68301-7|CAA92627.2| 364|Caenorhabditis elegans Hypothetical
protein W01B6.6 protein.
Length = 364
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 52 MAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDE--NKPSENEVMESDQ 204
M+KS RSR K+K + R + R KK G K + K +NE + DQ
Sbjct: 1 MSKSTRSRRKKKSKGGDRSERKTNKSERKKK--GAKSDIGKKKKKNETVSKDQ 51
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 28 KYFN-LRITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQ 204
+YF L K+L +K KC+ KEL ++K + G K+ +K N ++ Q
Sbjct: 689 EYFGQLPADQQKTLTEEFKGKCKVYFTPLMTSKELDKIKTLKGDKEASKALVNLAVDRQQ 748
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 NLRITMAKSLRSRWKRKCRAIKRERYAVKE-LARLKKMLGVKDENKPSENE 186
N +ITM LR K KRER +++ L R++ VKDE K + E
Sbjct: 412 NFQITMQNVLRDNDKLDSER-KRERGSIQSRLTRIENKDQVKDEKKDEKKE 461
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 148 LGVKDENKPSENEVMESDQVI 210
LG+ D+ + ENEV+E+D V+
Sbjct: 313 LGIYDDMRDDENEVLENDHVL 333
>Z37139-1|CAA85491.1| 485|Caenorhabditis elegans Hypothetical
protein C14B1.1 protein.
Length = 485
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 118 VKELARLKKMLGVKDENKPSENEVMESDQV 207
V+E AR+ + LGV +N P+ V +DQV
Sbjct: 295 VEENARILEFLGVDAKNTPANRIVSLADQV 324
>U95074-1|AAB94647.1| 485|Caenorhabditis elegans protein disulphide
isomerase isoformI protein.
Length = 485
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 118 VKELARLKKMLGVKDENKPSENEVMESDQV 207
V+E AR+ + LGV +N P+ V +DQV
Sbjct: 295 VEENARILEFLGVDAKNTPANRIVSLADQV 324
>U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 45 protein.
Length = 525
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 GTRSKSTSHKYFNLRITMAKSLRSRWKRKCRAIKRERYAVKELARLKK--MLGVKDENKP 174
G R +F +TM + R+ RKC +RY+ + R +K +G++ +N
Sbjct: 16 GIRCCRACAAFFRRTLTMNLRYKCRFDRKCEVSFNKRYSCR-CCRYEKCVRVGMRKDNLT 74
Query: 175 SENEVMES 198
S V+++
Sbjct: 75 SPVSVVQN 82
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 49 TMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVME 195
T+++SLR++ K +I RE+ V L +++ K +N+ + V E
Sbjct: 136 TLSRSLRAQNLEKVESILREKGVVLGLLSRNQLIEAKVDNRSRVDAVEE 184
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 139 KKMLGVKDENKPSENEVMESDQVIFLDA 222
KK KD+NKPS ++E D + +DA
Sbjct: 22 KKKKKNKDKNKPSGLRLIEEDAFLSVDA 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,216,663
Number of Sequences: 27780
Number of extensions: 102892
Number of successful extensions: 202
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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