Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D08
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   6.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   6.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 331 CPFHCSLPLSHRQNSSPRLRLPFQRAAVSFSPS 233
           CP HC   L   Q SSP+  +  +  + S SPS
Sbjct: 347 CPLHCKPELGQSQ-SSPKF-VARREESNSSSPS 377


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 216 QEYNLIRFHNLI 181
           Q YN++RF NL+
Sbjct: 386 QIYNMVRFRNLV 397


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/53 (16%), Positives = 25/53 (47%)
 Frame = +1

Query: 4   TRSKSTSHKYFNLRITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKD 162
           TR+  + H  + ++  +   ++ +W       +   Y +K    L+++LG ++
Sbjct: 258 TRTIPSDH--YQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEELEELLGKRN 308


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 68  EADGSENVELSNEN 109
           EA+G+  VEL +EN
Sbjct: 246 EAEGAITVELQSEN 259


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 68  EADGSENVELSNEN 109
           EA+G+  VEL +EN
Sbjct: 336 EAEGAITVELQSEN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,644
Number of Sequences: 438
Number of extensions: 1121
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)