Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D08
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06420.1 68414.m00679 expressed protein ; expression supporte...    31   0.15 
At1g74480.1 68414.m08628 RWP-RK domain-containing protein contai...    27   3.1  
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    27   4.1  
At1g35660.1 68414.m04432 expressed protein                             27   4.1  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     26   5.5  
At1g55475.1 68414.m06345 expressed protein                             26   5.5  
At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2...    26   7.2  
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type...    25   9.5  
At1g06590.1 68414.m00698 expressed protein                             25   9.5  

>At1g06420.1 68414.m00679 expressed protein ; expression supported
           by MPSS
          Length = 221

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 70  SRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVIFLDAG 225
           +RWKR    +K+E   V  +   K   GV    K  +N V E+ + +F   G
Sbjct: 95  NRWKRDQVCVKKEEIKVSGIVSNKDEDGVDSREKKKKNPVKENTRRVFKSKG 146


>At1g74480.1 68414.m08628 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 298

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +1

Query: 4   TRSKSTSHKYFNLRITMAK-SLR---SRWKRKCRAIKRERYAVKELARLKKMLGVKDENK 171
           T SK T  +YF + IT A  +L    +  KR+CR +   R+  ++L  L  ++    E +
Sbjct: 134 TLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNVKELQ 193

Query: 172 PSENE 186
             E E
Sbjct: 194 KMEGE 198


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P41410 DNA repair
            protein rhp54 (RAD54 homolog) {Schizosaccharomyces
            pombe}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1132

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 70   SRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQVI 210
            S W + C+  + E++ + EL          +++KP  NEV+  D+++
Sbjct: 1062 SEWNKYCK--QSEKHRISELV----FSSTNEKDKPINNEVVSKDRIL 1102


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 31  YFNLRITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEN 168
           Y    I   + L  R K     +K +   VKE+ RLKK L    +N
Sbjct: 675 YVQFHILKGQELSRRTKGTTNHLKMQSEVVKEVQRLKKKLTEYSQN 720


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 49  TMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEN 168
           TM KS     K+K  + KR     K + R+KK+  +  EN
Sbjct: 188 TMGKSYSVSEKKKHGSFKRTAQIYKSIVRMKKVNNLVPEN 227


>At1g55475.1 68414.m06345 expressed protein
          Length = 120

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 46  ITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQ 204
           +T+  SLR        A KRE+  V+ +  + K L    E +PS+ + ++SD+
Sbjct: 59  LTLKSSLRKVDSNSTEAEKREKKKVQWVDVIGKELAEIREFEPSDEDDIDSDR 111


>At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2)
           identical to CBL-interacting protein kinase 2
           [Arabidopsis thaliana] gi|9280636|gb|AAF86506
          Length = 456

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 43  RITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGVKDENKPSENEVMESDQ 204
           RIT+AK   S W RK   +K+++    E  ++++     +     +NE  E+ +
Sbjct: 254 RITIAKIKESSWFRKGLHLKQKKMEKMEKQQVREATNPMEAGGSGQNENGENHE 307


>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
           transport protein sll1276, Synechocystis sp., PIR:S77239
          Length = 634

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 310 PLSHRQNSSPRLRLPFQ 260
           PLSHR++SS  L+ PFQ
Sbjct: 18  PLSHRRSSSLFLKHPFQ 34


>At1g06590.1 68414.m00698 expressed protein
          Length = 916

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -1

Query: 301  HRQNSSPRLRLPFQRAAVSFSPSXXXXXXXXXXXXXXXPHSLMVCFHLLLRAFSLIE--- 131
            H+++ +  L LP+  A++SF  S                  L +  +   RA  L+    
Sbjct: 754  HKKSGNAVLGLPYALASISFCQSFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAF 813

Query: 130  PILLQH--IXXXXXLYIFASICFL 65
            P++L H  +      YIF + C+L
Sbjct: 814  PMILGHGGLELRARAYIFEANCYL 837


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,831,712
Number of Sequences: 28952
Number of extensions: 94493
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)