Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D07
         (361 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   2.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   6.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   6.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +2

Query: 80   WWRQRSWRPTWSWSRTR 130
            WW   +  P W+ + TR
Sbjct: 1042 WWSSTTTSPWWTTTTTR 1058



 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 107  TWSWSRTRARPW 142
            TW WS T   PW
Sbjct: 1041 TW-WSSTTTSPW 1051


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/18 (27%), Positives = 9/18 (50%)
 Frame = +2

Query: 68  LWIPWWRQRSWRPTWSWS 121
           +W+ W   ++W     WS
Sbjct: 220 IWLVWLLSQAWISVHIWS 237


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/18 (27%), Positives = 9/18 (50%)
 Frame = +2

Query: 68  LWIPWWRQRSWRPTWSWS 121
           +W+ W   ++W     WS
Sbjct: 453 IWLVWLLSQAWISVHIWS 470


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 5/18 (27%), Positives = 9/18 (50%)
 Frame = +2

Query: 68  LWIPWWRQRSWRPTWSWS 121
           +W+ W   ++W     WS
Sbjct: 453 IWLVWLLSQAWISVHIWS 470


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 117 HDHVGRHDLCRHH 79
           H H G H   +HH
Sbjct: 323 HHHAGHHIHAQHH 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,373
Number of Sequences: 336
Number of extensions: 1393
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)