Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D07
(361 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 2e-26
SB_59101| Best HMM Match : PT (HMM E-Value=0.026) 30 0.49
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 29 1.1
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08) 28 2.0
SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048) 27 3.5
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59) 27 4.6
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31) 27 6.1
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 114 bits (274), Expect = 2e-26
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +3
Query: 168 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 347
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 348 QRTR 359
QRTR
Sbjct: 68 QRTR 71
>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
Length = 386
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +2
Query: 83 WRQRSWRPTWSWSRTRARPW------PWQGRPERVGASHQAWSPCP 202
W+Q + +P W + ++PW PWQ P R ++ WSP P
Sbjct: 316 WQQGNDQP---WQQNNSQPWQQNIVQPWQQMPTRSLSNATPWSPQP 358
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Frame = +2
Query: 44 WTWRFPRRLWIPW--------WRQRSWRPTWS---WSRTRARPWPWQGR 157
WT R+ R+ W W W++R TWS + R R +PW R
Sbjct: 965 WTERWHRKTWDTWNEGPTWSKWQRRPTGRTWSHGYFRRDRTNRFPWTAR 1013
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 56 FPRRLWIPW--WRQRSW-RPTWSWSRTRARPWPW 148
+PR LW PW W + W R WS WPW
Sbjct: 1616 WPRSLW-PWSFWSRSLWPRSLLPWSLWPRSLWPW 1648
>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
Length = 1188
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 90 CRHHGIQSRRGNRHVHRLE-LRPPLLNDPSC 1
CR +G++ + N H L+ LR LL+ P+C
Sbjct: 443 CRKNGLEEKYSNNQKHELDHLRKELLDLPTC 473
>SB_46380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 141 HGRARVRDHDHVGRHDLCRHHGIQS-RRGNRHVHR--LELRPPLLND 10
H R R H H + HH QS + +RH HR L+ + L+ND
Sbjct: 3 HKRHRHSHHHHYPHYQYNHHHDQQSHQHHDRHHHREVLDHKTDLMND 49
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 104 PTWS-WSRTRARPW-PWQGRPERVGAS 178
PTWS W+ TRA PW PW G S
Sbjct: 382 PTWSSWTNTRA-PWSPWSAPTRPPGGS 407
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 168 TLSGLPCHGHGRARVRDHDHVGRHDLCRHHGIQS-RRGNRHVHR--LELRPPLLND 10
TL G H R R H H + HH QS + + H HR L+ + L+ND
Sbjct: 937 TLPGNYPESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHHREVLDHKTDLMND 992
>SB_49363| Best HMM Match : Laminin_G_2 (HMM E-Value=0.0048)
Length = 355
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 110 WSWSRTRARPWPWQGRPERVGASHQAWSPCP*RQNRQA*EHLPILSSH 253
W +R + PWPWQG SH +NR+ HL ++ SH
Sbjct: 314 WPMTRLVSGPWPWQGSLVSC-TSHL-------EENRENTSHLNMVQSH 353
>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
Length = 764
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 144 GHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLELRP 25
GH R + D +V R+ L H ++ +RHV +LRP
Sbjct: 344 GHVRRKTLDSRNVRRNTLDSRHVRRNTLDSRHVRPKKLRP 383
>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/36 (30%), Positives = 12/36 (33%)
Frame = +2
Query: 50 WRFPRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGR 157
W P R PW + WS PWP R
Sbjct: 634 WSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWPTPSR 669
>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
Length = 626
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 123 RDHDHVGRHDLCRHHGIQS--RRGNRHVHRLELRPPLLNDP 7
+DH + G +H G+ S R+ +R V + L + +DP
Sbjct: 105 KDHPNEGYRKAAKHFGVGSKRRKSSRRVRQFSLNMKVTSDP 145
>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 77 PWWRQRSWRPTWSWSRTRARPWPWQGRPERVG 172
P+ + + R WS+S + + WQG P R G
Sbjct: 54 PYPDRHTSRGVWSYSMSAGVFYSWQGHPCRTG 85
>SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 242 LSSHQRV*DHRFLPWPFTQR*SPEDHAC 325
LSS R HR P R SP +HAC
Sbjct: 127 LSSSNRGFRHRITSGPIKPRLSPSNHAC 154
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 84 HHGIQSRRGNRHVHRLELRPPLLND 10
H I+S R N+ VH L L PPL +D
Sbjct: 1307 HKDIRSCRENQ-VHHLSLEPPLTDD 1330
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 101 RPTWSWSRTRARPWPW 148
R WS SRTR P PW
Sbjct: 1532 RTIWSASRTREMPTPW 1547
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 86 RQRSWRPTWSWSRTRARPWP 145
R W PT S++ RA PWP
Sbjct: 77 RALPWPPTQSYTIRRALPWP 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,911
Number of Sequences: 59808
Number of extensions: 186722
Number of successful extensions: 603
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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