Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D07
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    97   3e-21
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   1.7  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    27   3.0  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 51/69 (73%), Positives = 54/69 (78%)
 Frame = +3

Query: 153 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 332
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKISPVQK 110

Query: 333 QTRAGQRTR 359
           QT AGQRTR
Sbjct: 111 QTTAGQRTR 119


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 34
           HGH      DH H   HD   HHG  S   + H H  E
Sbjct: 99  HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLCR-HHGIQSRRGNRHVH 43
           H HG A   DH H   H     HHG        H H
Sbjct: 76  HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHH 111


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 43
           HGH       H H G H     HHG     G  H H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGH 551



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 49
           H HG   V  H H G H    HHG     G  H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLCRHHG 76
           HGHG      H H G H +  HHG
Sbjct: 593 HGHGHHAPAHHGHHGEHGV--HHG 614



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 43
           HGHG      H H G H     HHG      +   H
Sbjct: 445 HGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 44  WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 145
           W W     L   WW         +WSR  A  WP
Sbjct: 76  WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 358 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 182
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 181 VTGT 170
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 358 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 182
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 181 VTGT 170
            + T
Sbjct: 582 QSNT 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,018,636
Number of Sequences: 27780
Number of extensions: 126674
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)