Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D07
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   5.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 68  LWIPWWRQ 91
           +WIP WRQ
Sbjct: 421 VWIPKWRQ 428


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 81  HGIQSRRGNRHVHRLELRP 25
           HG +   G RH +  +L+P
Sbjct: 46  HGHREGLGRRHRYNFQLKP 64


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 81  HGIQSRRGNRHVHRLELRP 25
           HG +   G RH +  +L+P
Sbjct: 47  HGHREGLGRRHRYNFQLKP 65


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 218 VDFAFTDKATKLGDWHPLFLVF 153
           V++      T +GD  P+FL F
Sbjct: 363 VEYGIIGPTTCMGDHKPVFLEF 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,210
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)