Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D07
         (361 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   116   6e-27
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   109   5e-25
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   109   5e-25
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           109   5e-25
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   109   5e-25
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             107   2e-24
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    31   0.17 
At1g07220.1 68414.m00768 expressed protein                             29   1.2  
At3g63100.1 68416.m07087 glycine-rich protein                          28   2.1  
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    27   2.8  
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    27   2.8  
At5g12460.1 68418.m01464 fringe-related protein similarity to pr...    27   5.0  
At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putativ...    26   8.7  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  116 bits (278), Expect = 6e-27
 Identities = 51/68 (75%), Positives = 62/68 (91%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 101 TRAGQRTR 108


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/68 (72%), Positives = 59/68 (86%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 109 TRAGQRTR 116


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/68 (72%), Positives = 59/68 (86%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 109 TRAGQRTR 116


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/68 (72%), Positives = 59/68 (86%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 109 TRAGQRTR 116


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  109 bits (262), Expect = 5e-25
 Identities = 49/68 (72%), Positives = 59/68 (86%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 109 TRAGQRTR 116


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  107 bits (257), Expect = 2e-24
 Identities = 47/68 (69%), Positives = 59/68 (86%)
 Frame = +3

Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 335
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 336 TRAGQRTR 359
           TRAGQRTR
Sbjct: 110 TRAGQRTR 117


>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 44  WTWRFPRRLWIPWWRQRSW 100
           W+WR    +W PW RQ  W
Sbjct: 107 WSWRKKAAIWNPWLRQTKW 125


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 110 WSWSRTRARPWPWQGRPERVGASHQAW 190
           W WS T  RPW  +    + G+  ++W
Sbjct: 235 WGWSETNLRPWEEEFGDIKQGSRRRSW 261


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 147 HGHGRARV-RDHDHVGRHDLCRHHGIQSRRGNR 52
           HGHG  R  RDH H       R HG    RG+R
Sbjct: 102 HGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHR 134



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = -2

Query: 147 HGHGRARVRDHDH-VGRHDLCRHHGIQ--SRRGNRHVH 43
           HGHGR     H H   RH     HG      RG+ H H
Sbjct: 92  HGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHH 129


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 346 PARVCFCTGMIFRTSSLSEGPRKKSMISNSL 254
           P R  FC+G+   +S   + PR+KS +S+ L
Sbjct: 43  PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73


>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 147 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNR 52
           HG  R R RD DH    D  R  G    R  R
Sbjct: 257 HGRDRDRERDRDHYRERDRDRERGRDRERDRR 288


>At5g12460.1 68418.m01464 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 415

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
 Frame = +2

Query: 47  TWRFPRRLWIPWWRQRSWRPTWSWSRTRA---RPWPWQGRP 160
           TWR+ R    PWWR    +      R       PWP Q  P
Sbjct: 25  TWRYRRGYIEPWWRPNITKGYVFLERPPGPDLLPWPQQSPP 65


>At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putative
           similar to plastidic aldolase NPALDP1 from Nicotiana
           paniculata [GI:4827251]; contains Pfam profile PF00274
           Fructose-bisphosphate aldolase class-I
          Length = 391

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 98  WRPTWSWSRTRARPW--PWQGRPERVGASHQA 187
           W  ++S++R         WQG+PE++ AS +A
Sbjct: 324 WHVSFSYARALQNSVLRTWQGKPEKIEASQKA 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,880,954
Number of Sequences: 28952
Number of extensions: 129527
Number of successful extensions: 431
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)