Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D06
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 92 3e-20
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 77 8e-16
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.092
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 30 0.12
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 28 0.49
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.1
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 1.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.6
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 2.6
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 3.5
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 25 4.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 6.1
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 24 8.0
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 24 8.0
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 92.3 bits (219), Expect = 3e-20
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = +1
Query: 223 GPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIG 402
G K +T++DYYFDSY+H+GIHEEMLKD+VRTL+YR+A+ N HLF K VLD+G
Sbjct: 3 GNTKKSADSGLTAKDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVG 62
Query: 403 CGT 411
CGT
Sbjct: 63 CGT 65
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 77.4 bits (182), Expect = 8e-16
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +1
Query: 235 NVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
+VT ++ + YYF+SYA IH ML D VRT YR+ +YHNKH+F GKTVLD+GCGT
Sbjct: 208 SVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGT 266
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 30.7 bits (66), Expect = 0.092
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 157 EMESMDVAQESTSAASTPVAEDG-PDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRT 333
E E +D ++S A+S ED PD E D++FD Y+ G+H M +
Sbjct: 364 ETEGVD-KEDSDKASSVQGNEDEVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDA-A 421
Query: 334 LTYRN 348
LT+R+
Sbjct: 422 LTHRD 426
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 30.3 bits (65), Expect = 0.12
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 334 LTYRNAMYHNKHLFTGKTVLDIGCG 408
L + ++ ++ F+GK +LDIGCG
Sbjct: 63 LDFMTEVFRERNCFSGKKILDIGCG 87
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 28.3 bits (60), Expect = 0.49
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 243 SNVLVGTIFSDRRRRSRGAFLGDIHTFHFKYFMYGEKSYLVLLF 112
S +LVGT + D R F+GDI+ F + G ++ F
Sbjct: 560 SPILVGTTYIDPRSLYERGFIGDIYQFLYNAVNVGSVAFDATFF 603
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 288 CIGIEIVISR---SHLLSSNVLVGTIFSDRRRRSRGAFLGDIHTFHFK 154
CIG + + + + + N+L+G S R R+S F GD T F+
Sbjct: 359 CIGTDKAVPQKFGADFHNENILLGAYISTRWRQSHMGFFGDHSTLLFQ 406
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +1
Query: 142 VHKILEMESMDVAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKD 321
+ K+ ++ +A + S V + ++ A ++TSR + + G E K
Sbjct: 107 IKKLQSEDASSIASSTLSMGEPVVDSEIEEEEDLASQLTSRAISLSNLSLHGRESEPSKT 166
Query: 322 EVRTLTYRNAMYHNKHLFT 378
E+ T ++ HLFT
Sbjct: 167 ELATSIPQSNEASKSHLFT 185
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 2.6
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 390 YCFSCEQMFIVVHS-IPVSECSNFVF*HFLVDAEMCIGIEIVISRSHLLSSNVL 232
+ F Q+FIV S P+ +F+F FL +C+ + + S SHLLS +L
Sbjct: 135 FLFFLSQIFIVYFSSFPIL---HFLFFFFLC---VCVFLSFLFSLSHLLSLAIL 182
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -2
Query: 303 VDAEMCIGIEIVISRSHLLSSNVLVGTIFSDRR-------RRSRGAFLGDIHTFHFKYFM 145
+DA+ IGIE SR S+ VG+ F+ R R + L D H F FK+++
Sbjct: 200 IDAKQLIGIEEKTSRLLYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWV 259
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 130 RLFPVHKILEMESMDVAQESTSAASTPVAEDGPDKNVTAE 249
++FPV + E +V +E+ T +ED DK+ T+E
Sbjct: 512 KIFPVTECGEKMLSEVPEEADDYLLTLASEDSIDKDSTSE 551
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 133 LFPVHKILEMESMD 174
LFP KIL+ME+MD
Sbjct: 106 LFPTTKILQMETMD 119
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 63 KTIPFPVKCSKSFCMNNEPSC 1
+ IP P C+ FC N+E C
Sbjct: 824 QNIPLPKTCAAIFCGNDELVC 844
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 157 QVFYVRGKVLFSFAFYNLKSYLR 89
QVF K++F F YN+K+ +R
Sbjct: 180 QVFSPGQKIVFDFRSYNIKATVR 202
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 292 NVHRNRNSNLSKSSPQQ*RSCRDHLQRQAS 203
N++ N N N ++P++ DH+QRQ S
Sbjct: 732 NINNNNNDN---NTPKRKNFLMDHIQRQLS 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,052
Number of Sequences: 5004
Number of extensions: 34088
Number of successful extensions: 102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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