Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D06
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 73 1e-13
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 66 1e-11
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 50 1e-06
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 43 8e-05
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 40 6e-04
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 30 0.63
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 28 3.3
05_06_0158 - 26054487-26054672,26054770-26055018,26056003-260566... 28 3.3
03_01_0257 + 1994645-1995061 28 3.3
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 27 7.7
01_06_1718 - 39408179-39408427,39409102-39409217,39409460-394096... 27 7.7
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 72.5 bits (170), Expect = 1e-13
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 193 SAASTPVAEDGPDKNVTAEE-MTSRD-YYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNK 366
SAAS P D A+ + D YF SY+H GIHE M+KD VRT YR+A+ H++
Sbjct: 20 SAASPPATGDSDAAAAAADAPLAEHDRIYFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQ 79
Query: 367 HLFTGKTVLDIGCGT 411
GK V+D+GCGT
Sbjct: 80 KFIEGKVVMDVGCGT 94
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +1
Query: 271 YFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
YF SY+ FGIH EML D+VRT YR+A+ N L G TVLD+GCGT
Sbjct: 256 YFGSYSSFGIHREMLGDKVRTEAYRDALLGNPSLMNGATVLDVGCGT 302
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 49.6 bits (113), Expect = 1e-06
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +1
Query: 175 VAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAM 354
+A AAS + G V +E+ +Y F +Y++ +EML D VR Y +A+
Sbjct: 1 MASLPNGAASASASAAGGGPAVVDKEVDFANY-FCTYSYLYHQKEMLCDRVRMDAYHSAV 59
Query: 355 YHNKHLFTGKTVLDIGCGT 411
+ N H F GK VLD+G G+
Sbjct: 60 FRNAHHFRGKVVLDVGTGS 78
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 43.2 bits (97), Expect = 8e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +1
Query: 241 TAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
T E +S YF Y + ML+D VRT TY A+ N+ F G+ V+D+G G+
Sbjct: 161 TKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDFEGRVVVDVGAGS 217
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 271 YFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
YF +Y+H G+HEEMLK + LF + VLD+GCGT
Sbjct: 48 YFKAYSHIGVHEEMLKIVNENCDRKRGWM--CPLFLVEVVLDVGCGT 92
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 30.3 bits (65), Expect = 0.63
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 154 LEMESMDVAQESTS--AASTPV----AEDGPDKNVTAEEMTSRDYYFDSYAHFGIHEEML 315
L+ E++D +S A T V +EDG N T EE+T YY S+ +G EE+
Sbjct: 81 LQSEALDDPSQSHEKFAVGTKVQAVWSEDGEWYNATIEELTENGYYV-SFEGWGNKEEVD 139
Query: 316 KDEVRTL 336
VR+L
Sbjct: 140 PANVRSL 146
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 157 EMESMDVAQESTSAASTPVAEDGPDKNVTAEEM 255
EM+S VA E+TS+ + V GP +T E +
Sbjct: 242 EMDSRVVAHETTSSLTNGVISSGPSAVITNESL 274
>05_06_0158 -
26054487-26054672,26054770-26055018,26056003-26056611,
26056970-26056972
Length = 348
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 319 DEVRTLTYRNAMYHNKHLFTGKTVLDIGCG 408
+E R + Y + F GKTVL +GCG
Sbjct: 155 EEFRGSVIHTSAYKSGSKFAGKTVLVVGCG 184
>03_01_0257 + 1994645-1995061
Length = 138
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 175 VAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYFDS 282
+A S +AA+ AE G D N+TA ++ YF++
Sbjct: 1 MASSSAAAATYRCAECGADLNLTAAQLYPEGVYFEA 36
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 195 CCVDACR*RWSRQER 239
CC +AC RW R+ER
Sbjct: 269 CCSEACPPRWVREER 283
>01_06_1718 -
39408179-39408427,39409102-39409217,39409460-39409603,
39409700-39410930,39411213-39411494
Length = 673
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 151 ILEMESMDVAQESTSAASTPVAEDGPDKNVTAEEMTS 261
+L E VAQ++ S+ + +DGP + + AE M+S
Sbjct: 493 VLHSECNKVAQKAHSSVKQDITKDGP-RQIAAEIMSS 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,827
Number of Sequences: 37544
Number of extensions: 204914
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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