Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D06
(412 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52) 88 3e-18
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 3e-08
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3) 33 0.069
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 29 2.0
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 29 2.0
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 29 2.0
SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6) 29 2.0
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 29 2.0
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25) 28 3.4
SB_2172| Best HMM Match : zf-CCHC (HMM E-Value=0.011) 28 3.4
SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22) 28 3.4
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 28 3.4
SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1) 27 4.5
SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7) 27 4.5
SB_17405| Best HMM Match : DUF433 (HMM E-Value=2.1) 27 4.5
SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3) 27 6.0
SB_19894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_31459| Best HMM Match : ASC (HMM E-Value=2.8e-09) 27 7.9
>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
Length = 380
Score = 87.8 bits (208), Expect = 3e-18
Identities = 53/96 (55%), Positives = 59/96 (61%), Gaps = 11/96 (11%)
Frame = +1
Query: 157 EMESMDVAQESTSAASTPV-----------AEDGPDKNVTAEEMTSRDYYFDSYAHFGIH 303
+ME +D A+ AA TPV A+D P A EMTS DYYFDSYAHF
Sbjct: 111 DME-VDTAKSDAVAAVTPVNGEVNHNSSNGAKDKPKPG--ASEMTSADYYFDSYAHF--- 164
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
DEVRTLTYRN+MYHNKHLF K VLD+GCGT
Sbjct: 165 -----DEVRTLTYRNSMYHNKHLFRDKIVLDVGCGT 195
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 54.4 bits (125), Expect = 3e-08
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +1
Query: 226 PDKNVTAEEMTSR------DYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKT 387
P VT+EE+ R D YF Y IH EMLKD+ RT +YR A+ F K
Sbjct: 95 PVSYVTSEEVHRRNLAWQDDEYFADYGSLKIHLEMLKDKPRTESYRMAIEQGAGYFKDKV 154
Query: 388 VLDIGCGT 411
VLD+GCGT
Sbjct: 155 VLDVGCGT 162
>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 232 KNVTAEEMTSRDYYFDSYAHFGIHEEMLK 318
K V+ E YF SY+HFGIHEEMLK
Sbjct: 50 KKVSDMEDDEDGAYFSSYSHFGIHEEMLK 78
>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
Length = 59
Score = 33.5 bits (73), Expect = 0.069
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 319 DEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
D +RT TY+ AM N F K V+D+G G+
Sbjct: 1 DSIRTSTYQRAMLQNVADFQDKVVIDVGAGS 31
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 313 LKDEVRTLTYRNAMYHNKHLFTGK 384
L DEVRT TYR ++H + L TGK
Sbjct: 11 LADEVRTGTYRQ-LFHPEQLITGK 33
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 286 AHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGK 384
A F E + DEVRT TYR ++H + L TGK
Sbjct: 869 AVFADLEPTVVDEVRTGTYRQ-LFHPEQLITGK 900
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 70 EPTVVDEVRTGTYRQ-LFHPEQLITGK 95
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 71 EPTVVDEVRTGTYRQ-LFHPEQLITGK 96
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 56 EPTVVDEVRTGTYRQ-LFHPEQLITGK 81
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 504 EPTVVDEVRTGTYRQ-LFHPEQLITGK 529
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 71 EPTVVDEVRTGTYRQ-LFHPEQLVTGK 96
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 135 EPTVVDEVRTGTYRQ-LFHPEQLITGK 160
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 656 EPTVVDEVRTGTYRQ-LFHPEQLITGK 681
>SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6)
Length = 282
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 160 MESMDVAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTL 336
+E AQE TS+ PV E+G K E+ + + Y H G+ + L+D+ L
Sbjct: 32 LECKRKAQELTSSDRAPVNENGRKKGYI--EVMKDLWNANRYEHLGLKAQNLRDQASRL 88
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
E + DEVRT TYR ++H + L TGK
Sbjct: 71 EPTVVDEVRTGTYRQ-LFHPEQLITGK 96
>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1744
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PVHKILEMESMDVAQESTSAASTPVAEDGP 228
PV+KI + ES D + T + STP +D P
Sbjct: 723 PVNKISDSESRDEEEAYTFSLSTPKTKDQP 752
>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
Length = 1271
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PVHKILEMESMDVAQESTSAASTPVAEDGP 228
PV+KI + ES D + T + STP +D P
Sbjct: 246 PVNKISDSESSDEEEAYTFSLSTPKTKDQP 275
>SB_2172| Best HMM Match : zf-CCHC (HMM E-Value=0.011)
Length = 513
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PVHKILEMESMDVAQESTSAASTPVAEDGP 228
PV+KI + ES D + T + STP +D P
Sbjct: 281 PVNKISDSESSDEEEAYTFSLSTPKTKDQP 310
>SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22)
Length = 1046
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PVHKILEMESMDVAQESTSAASTPVAEDGP 228
PV+KI + ES D + T + STP +D P
Sbjct: 268 PVNKISDSESSDEEEAYTFSLSTPKTKDQP 297
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 139 PVHKILEMESMDVAQESTSAASTPVAEDGP 228
PV+KI + ES D + T + STP +D P
Sbjct: 759 PVNKISDSESSDEEEAYTFSLSTPKTKDQP 788
>SB_23562| Best HMM Match : DUF288 (HMM E-Value=1.1)
Length = 411
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 223 HLQRQASTQQRCFPGRHPYFPFQVFYVRGKVLFSFAFYNLKSYL 92
HL+ ++ RCF GR + L SF FY K +L
Sbjct: 277 HLRENSNGSLRCFSGRSDVLYIPKRHASAFSLLSFIFYTNKVFL 320
>SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)
Length = 289
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 148 KILEMESMDVAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYF--DSY-AHFGIHEEMLK 318
+I+E ++ + +Q + + P P N + + + F +Y ++G
Sbjct: 121 RIVEDKTSNSSQSADMQSKQP-GRRTPKSNFSMSKQKQKGKVFIHGNYNRYYGYRNNNQS 179
Query: 319 DEVRTLTYRNAMYHNKHLFTGKTVLDIGCGT 411
+++R +++ K F GK VLDIGC T
Sbjct: 180 EDIRLKSFK------KEWFQGKDVLDIGCNT 204
>SB_17405| Best HMM Match : DUF433 (HMM E-Value=2.1)
Length = 284
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 157 EMESMD-VAQESTSAASTPVAEDGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRT 333
++ES++ + Q +T T +A+ + SR+ + H + + M +EVR
Sbjct: 40 DIESLECLTQSATGGKQTEIADAREKLAILVASEKSREMVGKAVTHDDVKQRMSAEEVRN 99
Query: 334 LTYRNAMYHN 363
A+ HN
Sbjct: 100 KADIKAILHN 109
>SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)
Length = 360
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 286 AHFGIHEEMLKDEVR-TLTYRNAMYHNK 366
AHFG+ + L++E+R +T NA+ + K
Sbjct: 115 AHFGLQQHELQEEIRKQITEHNALMYGK 142
>SB_19894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 210 CR*RWSRQERYC*GDDFERLLFRFLCTFRHPRG 308
CR +WS + R GD E +L R LC+ + PRG
Sbjct: 27 CRVQWSNRGRRSLGDRVEYVLMR-LCSLQ-PRG 57
>SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 236 FLSGPSSATGVDAAEVLSWAT 174
F++ PS A GVDA+ +++W +
Sbjct: 507 FIATPSPAPGVDASPLMTWGS 527
>SB_31459| Best HMM Match : ASC (HMM E-Value=2.8e-09)
Length = 509
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = -1
Query: 175 HPYFPFQVFYVRGKVLFSF------AFYNLKSYLRNKRITI 71
HPYF F +V G V +SF F L+ RN+RI +
Sbjct: 52 HPYFGFDRQHVYGIVAYSFRSAFVCGFKKLRIRQRNRRIRV 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,706
Number of Sequences: 59808
Number of extensions: 247070
Number of successful extensions: 594
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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