Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D06
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...   105   9e-24
AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical...    29   1.3  
Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin...    27   4.0  
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   7.0  
U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AF045643-3|AAC02591.1|  272|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score =  105 bits (253), Expect = 9e-24
 Identities = 45/64 (70%), Positives = 52/64 (81%)
 Frame = +1

Query: 220 DGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVLDI 399
           D P     A+E+TS+DYYFDSYAHFGIHEEMLKDEVRT TYRN++YHN HLF  K V+D+
Sbjct: 10  DAPVAAPAAKELTSKDYYFDSYAHFGIHEEMLKDEVRTTTYRNSIYHNSHLFKDKVVMDV 69

Query: 400 GCGT 411
           G GT
Sbjct: 70  GSGT 73


>AF067609-11|AAC17532.2|  252|Caenorhabditis elegans Hypothetical
           protein C23H5.1 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 274 FDSYAHFGIHEEML-KDEVRTLTYRNAMYHNKHLFTGKTVLDIGCG 408
           F S A+    ++ L +D + T T + A     H+  GK VLD+GCG
Sbjct: 4   FPSEAYTEAQQKWLGRDHLITPTIKKAF---GHILVGKEVLDVGCG 46


>Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical
           protein K01A11.2 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 361 NKHLFTGKTVLDIGCG 408
           N+ LF GK+VL++GCG
Sbjct: 70  NQTLFAGKSVLELGCG 85


>Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical
           protein F32H2.9 protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
           E  + DEVRT TYR +++H + L +GK
Sbjct: 77  EPTVVDEVRTGTYR-SLFHPEQLLSGK 102


>AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin
           (tba-6) protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 304 EEMLKDEVRTLTYRNAMYHNKHLFTGK 384
           E  + DEVRT TYR +++H + L +GK
Sbjct: 49  EPTVVDEVRTGTYR-SLFHPEQLLSGK 74


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 346 NAMYHNKHLFTGKTVLDIGCGT 411
           N + H+ HLF   T+L++GC T
Sbjct: 257 NYIPHHMHLFAHGTILNVGCLT 278


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 298 IHEEMLKDEVRTLTYRNAMYHNKHLFT 378
           + ++M  D+V  L YR ++  NK+LFT
Sbjct: 412 VTDDMTLDDVERLNYRWSVNDNKNLFT 438


>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 280 SYAHFGIHEEMLKDEVRTLTYRNAMYH-NKHLFTGKTVLDIGCGT 411
           ++   GIH EM  D V  L  +NA+ +  K +  GK V+    G+
Sbjct: 263 NHKDLGIHTEMFSDGVLDLIEKNAITNAKKAIHPGKLVVSFVYGS 307


>AF045643-3|AAC02591.1|  272|Caenorhabditis elegans Hypothetical
           protein F58H7.5 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 142 VHKI-LEMESMDVAQESTSAASTPVAEDGPDKNVTAEE 252
           VH+  +E+E +D  Q+S       +AE+  DK+ + EE
Sbjct: 90  VHEAEMEVEEVDSPQDSPDEFEEDIAEEVKDKSASEEE 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,246
Number of Sequences: 27780
Number of extensions: 195030
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)