Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D06
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.77 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 300  DAEMCIGIEIVISRSHLLS 244
            D E+CIG +I++S   LLS
Sbjct: 1238 DYEVCIGSQIMVSPETLLS 1256


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 259 SRDYYFDSYAHFGIHEEMLK 318
           S +  FD  AH+ + EE L+
Sbjct: 432 SEEQKFDDEAHWELEEESLQ 451


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = +1

Query: 247 EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNAMYHNKHLFTGKTVL 393
           EE    D Y   Y      E  ++D      Y+      KH  TG+T L
Sbjct: 145 EEFVPGDDYDGKYLVLPSGELHIRDVGPEDGYKTYQCRTKHRLTGETRL 193


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 246 SSNVLVGTIFSDRRRRSRG 190
           S++  VGTIF  +  R+RG
Sbjct: 274 SNSSTVGTIFGYQDMRNRG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,330
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)