Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D05
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   0.96 
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.7  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   2.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   2.9  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   6.8  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   6.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.8  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.0  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    25   9.0  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 255  PMRTGTRNNFFNCIGNQSSKVITGGDIRSMGTVAGF---LTPVATEVIKPA 112
            P     +  F  C+G+ SS+VI      ++GT+      L P+ TE++  A
Sbjct: 2323 PFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGA 2373


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 51  SGCSGYRISGILDWD 95
           SG  G+RI+GIL WD
Sbjct: 128 SGSLGFRITGILSWD 142


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 163 YSRGVPYTRRYGGNQTGQ*CRRASQSRIPE 74
           YS G P  R YGGN+      R  Q+R  E
Sbjct: 65  YSEGYPGARYYGGNEFIDQAERLCQTRALE 94


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 393  ITLLSTRKNH*LKIMKTVNSRSMKIVSHNHLPV 491
            + L   R NH L+   T NS    +  H+H PV
Sbjct: 1203 VKLWDIRMNHSLQTFSTDNSGLTSLTVHSHAPV 1235


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 171 SMGTVAGFLTPVATEVIKPASNVAAHPNPEYQRYDIRNNQNTVPSRPRA 25
           S  T  G +   A  +++P+S++   P     +    N +   PSR RA
Sbjct: 374 SSRTTTGNVRTKAANIVRPSSSINRRPPSSINQRPPSNLRILAPSRSRA 422


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 302 DDKDTRRRRRLSEMAGGVFYSDILSLN 382
           +++D   +R L   AGGV YS+ +  N
Sbjct: 506 EEEDLEHQRELEAEAGGVAYSEYVKQN 532


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 156 AGFLTPVATEVIKPASNVAAHPNPEYQRYDIRNNQNTVPSRPRA 25
           AG+ +  +TE + P    + +    Y  YDI   + T P+ P A
Sbjct: 100 AGYSSDSSTEDVAPGLYESPYDENLYINYDIDGKKITRPATPAA 143


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +3

Query: 396 TLLSTRKNH*LKIMKTVNSRSM------KIVSHNHLPVNIAVAA 509
           ++ STR+ + LK + ++  R        +I  H HLP N+  AA
Sbjct: 352 SIRSTREENRLKYLDSLRERYKHIPEIRRIARHRHLPTNVKKAA 395


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 264 RSTPMRTGTRNNFFNCIGNQSSKVI 190
           R    + G++N ++ C+GN S   I
Sbjct: 35  RGLKRKKGSKNVYYGCVGNSSGSSI 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,559
Number of Sequences: 5004
Number of extensions: 41557
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)