Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D05
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325...    30   1.3  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    29   2.2  
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580...    29   2.2  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   3.0  
03_01_0072 + 590008-590077,590284-590315,591874-592506                 28   5.2  
07_03_1556 + 27692770-27694119                                         27   6.8  
05_02_0072 - 6334613-6335215                                           27   6.8  
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548...    27   9.0  

>04_04_1503 +
           34031540-34031562,34031682-34032212,34032417-34032571,
           34032929-34033020,34033916-34034419
          Length = 434

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 173 DLWVQSRGSLHPSLRR*SNRPVMSPRIPIQNTRDTISGTTRTRCRRGLVPN 21
           D W+  RG    + RR  N+ + SPR+P+      ++ T +    +  + N
Sbjct: 323 DRWMTIRGPPRRATRRQKNQLLNSPRVPLMGRHTAMAATAKINAMKKGISN 373


>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
            35385254-35385372,35385701-35385811,35386068-35386595,
            35386702-35386881,35386957-35387556,35387646-35388066,
            35388183-35388280,35388372-35389260,35389366-35389544,
            35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
 Frame = -2

Query: 423  NDFSESRAKLSCPILRDRISL*KTPPAISEXXXXXXXX--XXSPAVGGRTLELRLRSTPM 250
            N F     ++ CP L   ++L   PP+IS             + AVGG   E R R+   
Sbjct: 909  NSFGYVDPEVICPALNVLVNLVCPPPSISNKSSSTGNQQPAATQAVGGAFSENRDRNAEK 968

Query: 249  RTGTRNNFFNCIGNQSSKVITGGDIRSMGTVAGFLTPV 136
             T  RN   N    +S +    G+    G      TPV
Sbjct: 969  CTTDRNLTAN--QGESRERCGDGNTSQQGNTVQISTPV 1004


>03_02_0132 -
           5808606-5808696,5808804-5808875,5809133-5809204,
           5809299-5809379,5809475-5809618,5809708-5809779,
           5810027-5810140,5810684-5810755,5811462-5811609,
           5812120-5812231
          Length = 325

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 219 CIGNQSSKVITGGDIRSMGTVAGFLTPVATEVIKPASNVAAHPNPEYQRY-DIRNNQNTV 43
           C      +V+T  ++ ++  V  F T V   +     N   H N +Y  Y D+ NN+ T 
Sbjct: 75  CSQQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLKRFNPLNHVNNDYSNYRDLHNNKLTG 134

Query: 42  PSRPR 28
           P  P+
Sbjct: 135 PIPPQ 139


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 324  DADSQRWQEASSTVIFCPLI*DTITLLSTRKNH*LKIMKTVNSRSMKIVSHNHLPVNIAV 503
            DA S+RW++          I D + L+ + K H   +++ + SR  +I S  H+  NI +
Sbjct: 1469 DALSRRWKQRKQVQQVSLFIVDELHLIGSEKGH---VLEVIVSRMRRIAS--HIGSNIRI 1523

Query: 504  AA 509
             A
Sbjct: 1524 VA 1525


>03_01_0072 + 590008-590077,590284-590315,591874-592506
          Length = 244

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 225 RNCYESLFAWE*NVDAALVYVHRPQATTRTRAGDA 329
           R CYE++ AWE      L  + R +A  +  A +A
Sbjct: 147 RECYEAMAAWEAERKVGLAEIERLRADNKRLAAEA 181


>07_03_1556 + 27692770-27694119
          Length = 449

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 12  AAGIRHEAATAPCSGCSGYRISGILDWDARRHYWPV 119
           A    ++AA  PCSGC+G   S   +  A   Y PV
Sbjct: 123 AVDTSNDAAWIPCSGCAGCPTSSPFNPAASASYRPV 158


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 286 STDRRRRQGHAPATQTLRDGRRRLLQ*YSV 375
           +T RRR +G +P T  L+ G+R L   +S+
Sbjct: 161 ATTRRRGRGCSPPTNLLKSGQRHLAVSFSI 190


>04_04_0605 +
           26549904-26551939,26553931-26554180,26554764-26554829,
           26555194-26555388,26555830-26556141,26556537-26556595,
           26557138-26557381,26557466-26557528,26557997-26558386
          Length = 1204

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 103 DITGRFDYLRSDGCKEPRDCTHRSNITTCYHFARLVTDAI 222
           D+  R +++R +  KE  D   +S ITT Y+ A+LVT+A+
Sbjct: 789 DVDQRVEWMRENS-KETYD-EAKSCITTNYYGAKLVTEAL 826


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,679,788
Number of Sequences: 37544
Number of extensions: 321509
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)