Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D05
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.00 
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       30   1.3  
SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_8825| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_30823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.3  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             28   5.3  
SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3)            27   7.0  
SB_18249| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_45805| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)         27   7.0  
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    27   7.0  
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_44076| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)            27   9.3  
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_12434| Best HMM Match : SAB (HMM E-Value=4.6)                       27   9.3  
SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 144 TPVATEVIKPASNVAAHPNPEYQRYDIRNNQNTV 43
           +P     IKP  N++A  N  Y R++I N+ +TV
Sbjct: 55  SPTEHYFIKPTHNISAIENIRYHRFNIPNSHSTV 88


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -2

Query: 387 PILRDRISL*KTPPAISEXXXXXXXXXXSPAVGGRTLELRLRSTPMRTGTRNNFFNCIGN 208
           P  ++RI L  TPP  S                G + ++  R+TP  TGT     N    
Sbjct: 90  PASQERIKLELTPPPSSSSLPELSSGNTHGETNGMSAKVNGRNTPSPTGTEGTNHN-TAE 148

Query: 207 QSSKVITGGDI--RSMGTVAGFLTPVATEVIK 118
            + + +   D+    +GT + ++T ++ E I+
Sbjct: 149 ATEQFLPDFDLVGTILGTTSRYITILSEEEIE 180


>SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 2  DPPGCRNSARGRD-GTVFWLFRISYL 76
          DPPGCRNS      GT +W+   SY+
Sbjct: 17 DPPGCRNSMEMYTFGTQYWMIISSYV 42


>SB_8825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 7   PGLQEFGTRPRRHRVLVVPDIVSLVF 84
           P   + G R ++HR+LVV D+V++++
Sbjct: 31  PIAADCGIRKKKHRILVVVDVVAIIY 56


>SB_30823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 107 MSPRIPIQNTRDTISGTTRTRCRRGLVP----NSCSPGD 3
           +SP  P+ N R+ IS T  +   +G V     NSCSPGD
Sbjct: 32  LSPPCPVGNIREGISKTIMSE--KGTVTHRRSNSCSPGD 68


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 362 SDILSLNIGHDNFALDSEKSLTKNHENGKLEINENSFT 475
           SDI +LN+G++N      K L K     +L+++ N FT
Sbjct: 61  SDITALNLGYNNIVDLDPKQLLKFTALKELDLSRNFFT 98


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 51 NTVPSRPRAEFLQPGGS 1
          N +P+ P  EFLQPGGS
Sbjct: 14 NEIPTVPIIEFLQPGGS 30


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +2

Query: 302 DDKDTRRRRRLSEMAGGVFYSDILSLNIGHDNFALDSEKSLTKNHENGKL 451
           D+ ++R +R +  + G +      SLN GH     +++K++  + +N K+
Sbjct: 45  DELNSRAKRTIKSLKGKIQEKGSHSLNTGHILLRTETDKAIPTDEKNRKV 94


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -2

Query: 387 PILRDRISL*KTPPAISEXXXXXXXXXXSPAVGGRTLELRLRSTPMRTGTRNNFFN 220
           P  ++RI L  TPP  S                G + ++  R+TP  TGT     N
Sbjct: 762 PASQERIKLELTPPPSSSSLPELSSGNTHGETNGMSAKVNGRNTPSPTGTEGTNHN 817


>SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3)
          Length = 107

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 129 EVIKPASNVAAHPNPEYQRYDIRNNQNTVPS-RPRAEFLQP 10
           ++  PA++  +H  P YQ+  + + Q  +PS +P+    QP
Sbjct: 24  QIAAPAASAMSHATPSYQQPQMPSYQPQMPSYQPQMSSYQP 64


>SB_18249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 60 NNQNTVPSRPRAEFLQPGGS 1
          N   +  S PR EFLQPGGS
Sbjct: 31 NASTSFGSDPRIEFLQPGGS 50


>SB_45805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2  DPPGCRNSAR-GRDGTVFWLFRI 67
          DPPGCRNS + G++    W  R+
Sbjct: 17 DPPGCRNSIKYGQEEFQIWTRRV 39


>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
          Length = 1098

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 83   NTRDTISGTTRTRCRRGLVPNSCSPGD 3
            N+++     T +R R+G + NSCSPGD
Sbjct: 957  NSKEVTQRFTVSR-RKGWISNSCSPGD 982


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 96  HPN-PEYQRYDIRNNQNTVPSRPRA-EFLQPGGS 1
           H N P ++R  I  N+  +P    + EFLQPGGS
Sbjct: 288 HANIPVFERSFIDRNKERIPEDQLSIEFLQPGGS 321


>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +2

Query: 2  DPPGCRNS---ARGRDGTVFW 55
          DPPGCRNS   + GR+  + W
Sbjct: 17 DPPGCRNSMIGSGGREHAIAW 37


>SB_44076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 69  DIRNNQNTVPSRPRAEFLQPGGS 1
           D++  Q+TV S    EFLQPGGS
Sbjct: 38  DVKLTQHTV-SEKEIEFLQPGGS 59


>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
          Length = 1405

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 349 SCHL*ESASPARVLVVACGRWTYTRAASTFYS 254
           S  L E+  P    +   GRW YTRA   F S
Sbjct: 624 SVPLREADRPLTTFITPFGRWRYTRAPQGFLS 655


>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1441

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 322 PARVLVVACGRWTYTRAASTFYS 254
           P   L+   GRW YTRA   F S
Sbjct: 672 PLTTLITPFGRWRYTRAPQGFLS 694


>SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 56 TRTRCRRGLVPNSCSPGD 3
          +R+R  R LV NSCSPGD
Sbjct: 9  SRSRPGRLLVSNSCSPGD 26


>SB_12434| Best HMM Match : SAB (HMM E-Value=4.6)
          Length = 160

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 57 NQNTVPSRPRAEFLQPGGS 1
          N  TV    R EFLQPGGS
Sbjct: 27 NNKTVRHHGRIEFLQPGGS 45


>SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 50 TRCRRGLVPNSCSPGD 3
          TR R  L+ NSCSPGD
Sbjct: 18 TRVRFPLISNSCSPGD 33


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   DPPGCRNSARGRD 40
           DPPGCRNS  G++
Sbjct: 93  DPPGCRNSIAGKN 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,327,794
Number of Sequences: 59808
Number of extensions: 358143
Number of successful extensions: 2472
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2472
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)