Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D05
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.47 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 329 RLSEMAGGVFYSDILSLNIGHDNFALDSEKSL---TKNHENGKLEINENSFTQS 481
           +LSE+ G  F+S +LS++  +D   ++ E  L   T    NG    N  +F Q+
Sbjct: 487 KLSELLGHAFHSQVLSMS-DYDISNIEHEALLLVITSTFGNGDPPENGEAFAQN 539


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 115 GQ*CRRASQSRIPEIRY 65
           G+ C+R   SRIP++ Y
Sbjct: 53  GEPCQRVHSSRIPDLSY 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 49  VLVVPDIVSLVFWIGMRGDITGRFDYLRSDGCKE 150
           V+V   +V+LV ++  R    GRF    +DG +E
Sbjct: 572 VMVSVHVVALVLYLLDRFSPFGRFKLANTDGTEE 605


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 332 VCVAGACPCRRLRSVDVH*SCVYVLLPCEQGLVTISSIASV 210
           VC     PC   R+++V    VY   P +  ++ IS I  V
Sbjct: 541 VCGVKGIPCSWGRAINVANRYVYASQPDKDRVLVISEIQMV 581


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 129 EVIKPASNVAAHPNPEYQRYDIRNNQN 49
           ++I   SN   H N  Y   +  NN N
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYN 339


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 146 LHPSLRR*SNRPVMSPRIPIQN 81
           + P + +   R  +SPR PI+N
Sbjct: 14  ISPQILKNDKRIYLSPRTPIKN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,334
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)