Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D05
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 31 0.61
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 29 2.5
At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1 pr... 29 2.5
At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi... 28 4.3
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi... 28 4.3
At2g15080.2 68415.m01719 disease resistance family protein conta... 27 5.7
At2g15080.1 68415.m01718 disease resistance family protein conta... 27 5.7
At1g48210.1 68414.m05382 serine/threonine protein kinase, putati... 27 5.7
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 1025
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 142 TRRYGGNQTGQ*CRRASQSRIPEIRYPEQPEHGAVAASCRIPAA 11
T Y GN C A++ RI EI E+ E A A R+P A
Sbjct: 924 TNGYSGNDLKNLCVTAARRRIIEIVEKEKSERDAAVAEGRVPPA 967
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Frame = +1
Query: 70 VSLVFWIGMRGDITGRFDYLRSD-----------GCKEPRDCTHRSNI 180
V+ VF + M GD+T D +RS GC E R+CTH++++
Sbjct: 197 VNNVFVLKMMGDLTLFLDIIRSTKLNSSQEDAILGCLETRNCTHKNSV 244
>At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1
protein (CUC1) identical to CUP-SHAPED COTYLEDON1 (CUC1)
(GI:12060422) [Arabidopsis thaliana]
Length = 310
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 252 MRTGTRNNFFNCIGNQSSKVITGGDIRSMGTVAGFLTPVATEVIKP-ASNVAAHPNPEYQ 76
+++G + N I + SS +TG + +A + ATE + ++N AAH + +
Sbjct: 171 LKSGVVSRETNLISSSSSSAVTGEFSSAGSAIAPIINTFATEHVSCFSNNSAAHTDASFH 230
Query: 75 RYDIRNNQNTVPSRPR 28
+ + P +PR
Sbjct: 231 TFLPAPPPSLPPRQPR 246
>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 577
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +1
Query: 73 SLVFWIGMRGDITGR---FDYLRSDGCKEPRDCTHRSNITTCYHFARL--VTDAIEEIVT 237
SL+ W+ GD+ G ++ +R +GC EP ++ + + + R+ T+ +E++
Sbjct: 162 SLIHWVSSSGDVDGAMRLWEEMRDNGC-EPTVVSYTAYMKMLFADGRVEEATEVYKEMLR 220
Query: 238 SPCSHGSRT*TQL 276
S S T T L
Sbjct: 221 SRVSPNCHTYTVL 233
>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 52 LVVPDIV--SLVFWIGMRGDITGRFDYLRSDGCK 147
LVV ++ S+V+W+ M GDI G LR K
Sbjct: 357 LVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSK 390
>At2g15080.2 68415.m01719 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 320 RRRRLSEMAGGVFYSDILSLNIGHDNFALDSEKSLTKNHENGKLEINENSFTQS 481
R RLS + + ++SL++GH+ +SL+ G L + N + +
Sbjct: 637 RHNRLSGLLPENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDT 690
>At2g15080.1 68415.m01718 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 320 RRRRLSEMAGGVFYSDILSLNIGHDNFALDSEKSLTKNHENGKLEINENSFTQS 481
R RLS + + ++SL++GH+ +SL+ G L + N + +
Sbjct: 637 RHNRLSGLLPENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDT 690
>At1g48210.1 68414.m05382 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 [Lycopersicon
esculentum] gi|3668069|gb|AAC61805; contains protein
kinase domain, Pfam:PF00069
Length = 363
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 120 KPASNVAAHPNPEYQRYDIRNNQNTVPSRP 31
+PA N A + YQR D NQ +P +P
Sbjct: 21 RPAHNPAGYNGGHYQRADPPMNQPVIPMQP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,813,910
Number of Sequences: 28952
Number of extensions: 233429
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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