Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D04
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.6  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 122 SAAEHKYTNPSKNKD 78
           SAAE+KYTN   N D
Sbjct: 17  SAAENKYTNKYDNVD 31


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 391  SDYNGPRESNGIVKYMRAQVGPSSRD 468
            + +  P E NGIV+Y      P S D
Sbjct: 1219 ASWKPPVEPNGIVEYYTVYYKPVSTD 1244


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 301 LLLLMILEDRLSLVYRQLQRIQVSNAYNDRTMVRKT 194
           LLL+    D +S    +  R    N YND  + R T
Sbjct: 10  LLLMFSYTDNVSSTRTKYLRTNFPNFYNDFEVQRYT 45


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIKSRRQLL 36
           D   ES     +++AAE  +TNPS     ++    + R +L+
Sbjct: 530 DSSVESRVWPRAAAAAERLWTNPSDYVKQTERRFYRHRERLV 571


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 157 SSVLDQHDTALVMFYAPWCGHCKRLKPEYA 246
           S+VLD  +     F+  W G   +  P YA
Sbjct: 190 SNVLDVINVMTYDFHGSWAGVTAQNSPLYA 219


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 280 EDRLSLVYRQLQRIQVSNAY 221
           +D+  +VY  LQRI++   +
Sbjct: 156 KDKYRVVYTDLQRIELEKEF 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,325
Number of Sequences: 336
Number of extensions: 2105
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)