Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D04
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 180 5e-46
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 9e-30
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 113 5e-26
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41) 101 4e-22
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 96 1e-20
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 4e-19
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 87 7e-18
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 87 9e-18
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 84 6e-17
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33) 79 2e-15
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 48 3e-06
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 48 5e-06
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 44 5e-05
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058) 42 3e-04
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19) 41 6e-04
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 39 0.002
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 34 0.068
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 31 0.64
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 30 1.1
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 30 1.1
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1) 29 1.9
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2) 27 7.8
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 180 bits (438), Expect = 5e-46
Identities = 84/143 (58%), Positives = 104/143 (72%)
Frame = +1
Query: 34 YNNCRRDLIMSVSLKSLFLLGLVYLCSAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWC 213
YNN ++ + + S F+L +++ S DVLDL DS+F S + D LV F+APWC
Sbjct: 510 YNNAIQNNGWTFTQVSAFVL--LFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWC 567
Query: 214 GHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSS 393
GHCKRL PEY AA LKK+DPPV LAKVDCTE GK TC K+ VSGYPTLKIFR GE+S
Sbjct: 568 GHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSK 627
Query: 394 DYNGPRESNGIVKYMRAQVGPSS 462
DY+GPR+S+GI++YM+ Q GPSS
Sbjct: 628 DYDGPRDSSGIIRYMKKQAGPSS 650
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 298 VDCTEGGKSTCD-KFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPSSR 465
+DC G++TC +F + +PTLK+FR G+ DY GP+++ + Y+ Q+G +
Sbjct: 434 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLGDGKK 490
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +1
Query: 163 VLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFS 342
V D L+ FYAPWCGHCK L+P+Y G +D + +AK+D T FS
Sbjct: 876 VNDPTKDVLIEFYAPWCGHCKSLEPKYN-ELGEKLQDVKDIVIAKMDAT--ANDAPPNFS 932
Query: 343 VSGYPTLKI 369
V G + I
Sbjct: 933 VQGIIIISI 941
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 126 bits (304), Expect = 9e-30
Identities = 60/113 (53%), Positives = 76/113 (67%)
Frame = +1
Query: 121 EEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKV 300
E+DV L +F V+++++ LV FYAPWCGHCK L PEYA AA +K +DPPV AK+
Sbjct: 60 EDDVSVLNSKNFDRVIEENNIILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKM 119
Query: 301 DCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPS 459
D T +F VSGYPTLKIFRKG +Y GPRE +GIV+YM+ Q P+
Sbjct: 120 DATV-ASDIAQRFDVSGYPTLKIFRKG-TPYEYEGPREESGIVEYMKKQSDPN 170
Score = 125 bits (301), Expect = 2e-29
Identities = 59/111 (53%), Positives = 77/111 (69%)
Frame = +1
Query: 133 LDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTE 312
L LT +F+ V+++ LV F+APWCGHCK+L PEY AA L+K DPP+ LA VD T
Sbjct: 179 LTLTKENFTEVVNRESLMLVEFFAPWCGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATI 238
Query: 313 GGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPSSR 465
+ K+ V GYPTLK+FRKG+ +++Y G R+ GI YMR+QVGPSSR
Sbjct: 239 ESE-LAQKYEVQGYPTLKVFRKGK-ATEYKGQRDQYGIASYMRSQVGPSSR 287
Score = 42.7 bits (96), Expect = 1e-04
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +1
Query: 121 EEDVLDLTDSDFSSVL-DQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAK 297
+E V + F ++ D L+ FYAPWCG L+P + G ++D + +AK
Sbjct: 524 KEPVTVVVGKTFDEIVNDPKKDVLIEFYAPWCGIA--LEPTFK-KLGKHFRNDKNIVIAK 580
Query: 298 VDCTEGGKSTCDKFSVSGYPTLKIFRKGELSS--DYNGPRESNGIVKYM 438
+D T ++V G+PT+ + + ++G RE ++K++
Sbjct: 581 IDAT--ANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGRELKDLIKFV 627
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 113 bits (273), Expect = 5e-26
Identities = 62/138 (44%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Frame = +1
Query: 67 VSLKSLFLLGLVYLCSAAE----EDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLK 234
+ L + LL LV L + E EDVL LT+ +F + + LV FYAPWCGHCK L
Sbjct: 1 MKLLPVLLLALVSLAYSEEIKEEEDVLVLTEKNFDEAVAANKHVLVEFYAPWCGHCKALA 60
Query: 235 PEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRE 414
PEYA AAG LK + + LAKVD T K +KF V GYPT+K F+ G+ S+Y G R
Sbjct: 61 PEYAKAAGQLKSEKSEIKLAKVDATAETK-LGEKFQVQGYPTIKFFKDGK-PSEYAGGRT 118
Query: 415 SNGIVKYMRAQVGPSSRD 468
+ IV ++ + GP ++D
Sbjct: 119 APEIVSWLNKKTGPPAKD 136
Score = 64.1 bits (149), Expect = 6e-11
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +1
Query: 139 LTDSDFSSVLDQHD-TALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEG 315
L +F V D V FYAPWCGHCK+L P + G KD + +AK+D T
Sbjct: 389 LCGKNFDEVARNKDKNVFVEFYAPWCGHCKQLAPIWD-QLGEKYKDHADIVVAKMDST-- 445
Query: 316 GKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRA 444
+ + V +PT+K F K + DYNG R + VK++ +
Sbjct: 446 -ANEVEGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLES 487
>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
Length = 271
Score = 101 bits (241), Expect = 4e-22
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Frame = +1
Query: 112 SAAEED---VLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPP 282
++AEED V L SDF L+ + LVMFYAPWCGHCK KP+Y AA KD P
Sbjct: 140 ASAEEDSSLVKQLDGSDFWGYLNNTEHVLVMFYAPWCGHCKNAKPKYEKAAETF-KDQPN 198
Query: 283 VSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPSS 462
AK+DCT+ G CDK V+GYPTL+ + G+ +Y+G R + ++ +M P S
Sbjct: 199 RVFAKLDCTKFG-DVCDKEEVNGYPTLRYYLYGKFVVEYDGDRVTEDLISFMEEPPLPLS 257
Score = 86.6 bits (205), Expect = 9e-18
Identities = 40/109 (36%), Positives = 62/109 (56%)
Frame = +1
Query: 112 SAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSL 291
S + V+ LTD + H+ LVM++APWCGHC +KP Y AA +L +D +L
Sbjct: 46 SKDDSKVVFLTDESHDEFIKSHENVLVMYFAPWCGHCNEMKPNYYKAAQVLHDEDANCNL 105
Query: 292 AKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYM 438
A VDCT+ K K +++GYPT+K++ K ++ E + +VK +
Sbjct: 106 AAVDCTK-HKDVAKKVALAGYPTVKLY-KASNTAKAASAEEDSSLVKQL 152
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +1
Query: 229 LKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFSVSGYPT 360
+KP + AA L KD +LA VDCTE K+TC++ + GYPT
Sbjct: 1 MKPVFEKAAKQLGKDVKG-ALAAVDCTES-KNTCNQRDIKGYPT 42
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 95.9 bits (228), Expect = 1e-20
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 82 LFLLGLVY-LCSAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAG 258
LF L L++ + S + V+DLT +F V++ ALV FYAPWCGHCK+L P Y G
Sbjct: 7 LFKLFLLFSISSLTQGKVIDLTKDNFDEVVNGEKFALVEFYAPWCGHCKQLAPTYE-QLG 65
Query: 259 ILKKDDPPVSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELS-SDYNGPRESNGIVKY 435
V +AKVD +G + +F V G+PT+K F KG + +YNG R+ N +K+
Sbjct: 66 EAYTQSSDVIIAKVD-ADGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNGGRDINDFIKF 124
Query: 436 MRAQVGPSSR 465
+ + G R
Sbjct: 125 IEEKTGVRGR 134
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 91.1 bits (216), Expect = 4e-19
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Frame = +1
Query: 112 SAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSL 291
S + V DL +F ++ + D LV FYAPWC HC+ L P+ AA L
Sbjct: 16 SGSANFVYDLNAQNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANALAAKG-LFQF 74
Query: 292 AKVDCTE-GGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPSSR 465
AKVDCT+ K CD F + GYP++K+F+ G+ + DY G R +V YM + +S+
Sbjct: 75 AKVDCTDPRSKVLCDNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMESVTSTASQ 133
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 87.0 bits (206), Expect = 7e-18
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Frame = +1
Query: 121 EEDVLDLTDSDFSS-VLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAK 297
+EDV++LTD++F VL+ D LV F+APWCGHC+RL PE+A AA LK V +
Sbjct: 78 KEDVVELTDTNFEKEVLNSKDLWLVEFFAPWCGHCQRLAPEWAKAATELK---GKVKVGA 134
Query: 298 VDCTEGGKSTCDKFSVSGYPTLKIFRKGELSS----DYNGPRESNGIVKY 435
+D T T ++ V GYPT+K+F G +S DY G R ++ I++Y
Sbjct: 135 LDATV-HTVTASRYQVQGYPTIKVFAAGIKNSHSVEDYQGGRTASDIIQY 183
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 337 FSVSGYPTLKIFRKGELS-SDYNGPRESNGIV 429
+++ G+PT+KIF + S DYNG R + GIV
Sbjct: 11 YNIRGFPTIKIFGANKNSPQDYNGQRTAQGIV 42
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 86.6 bits (205), Expect = 9e-18
Identities = 40/67 (59%), Positives = 47/67 (70%)
Frame = +1
Query: 97 LVYLCSAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDD 276
L+++ S DVLDL DS+F S + D LV F+APWCGHCKRL PEY AA LKK+D
Sbjct: 4 LLFVGSTLSSDVLDLGDSNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKND 63
Query: 277 PPVSLAK 297
PPV LAK
Sbjct: 64 PPVPLAK 70
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 83.8 bits (198), Expect = 6e-17
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Frame = +1
Query: 121 EEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYA-VAAGILKKDDPPVSLAK 297
E +L+L DS+F + +H LV FYAPWC HCK++ P+Y VA +L V LAK
Sbjct: 133 EPTLLELDDSNFEPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDVAKELLILSHNSVRLAK 192
Query: 298 VDCTEGG---KSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVK 432
VDC+ K TC K++V PT+ +F G+ ++ G + +K
Sbjct: 193 VDCSANNMATKKTCKKYNVKFLPTIYLFHDGKFVEEFEGNNRNKKSIK 240
Score = 57.6 bits (133), Expect = 5e-09
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 118 AEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAK 297
A VL+L D +F+ + +++ LV FYAPWC C+RL P + AA L+ ++P + AK
Sbjct: 49 ASPAVLNLNDQNFNETIKKNEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAK 108
Query: 298 VDCT-EGGKSTCDKFSVS-GYP 357
V + + K CD S G P
Sbjct: 109 VIYSIDECKVLCDNLMASDGVP 130
>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
Length = 386
Score = 78.6 bits (185), Expect = 2e-15
Identities = 38/83 (45%), Positives = 50/83 (60%)
Frame = +1
Query: 112 SAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSL 291
S +V+ L D F + ++ + LVMFYAPWCGHCK +KPEY AA LK+ + P L
Sbjct: 78 SDTPSEVVHLRDDMFDDFVAKNPSVLVMFYAPWCGHCKAMKPEYVDAAQTLKEQEIPGVL 137
Query: 292 AKVDCTEGGKSTCDKFSVSGYPT 360
A VD T+ + +F V GYPT
Sbjct: 138 AAVDATKEA-ALGKRFKVEGYPT 159
Score = 60.5 bits (140), Expect = 7e-10
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Frame = +1
Query: 112 SAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILK-KDDPPVS 288
S +V L+D+ F S + + LVMFYAPWCGHCK+ KPE AA K K+ +S
Sbjct: 191 SEIPSEVYHLSDTTFKSFVKKKKHVLVMFYAPWCGHCKKAKPELMSAAKHHKDKNKRALS 250
Query: 289 L-------------------AKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPR 411
L A VDCT+ + C +F V GY F G+ Y R
Sbjct: 251 LRDFDFSNDTLCNRRRLIAYAAVDCTK-EMAVCQQFGVEGY-----FNYGKNDFKYTSGR 304
Query: 412 ESNGIVKYM 438
E+ +++M
Sbjct: 305 EAKDFIQFM 313
Score = 34.7 bits (76), Expect = 0.039
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 187 LVMFYAPWCGHCKRLKPEYAVAA 255
+++ Y CG+CKR KPE+A AA
Sbjct: 3 VIVLYIAGCGYCKRFKPEFAAAA 25
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 127 DVLDLTDSDFSSVLDQHDTALVMFYAP 207
+V LT F L D+ LVMFYAP
Sbjct: 335 NVQHLTQDTFDEALKTFDSILVMFYAP 361
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 60.5 bits (140), Expect = 7e-10
Identities = 31/87 (35%), Positives = 43/87 (49%)
Frame = +1
Query: 121 EEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKV 300
E + +LTD DF + L + LV FYAPWC C L+P+Y AA L K+ V +
Sbjct: 21 ENPIFELTDQDFDNFLKDKEVMLVDFYAPWCSDCDNLRPKYEKAARDLAKEHKFVMAKAL 80
Query: 301 DCTEGGKSTCDKFSVSGYPTLKIFRKG 381
T ++TC V + TL + G
Sbjct: 81 MNTNSTQTTCLPMGVHYWRTLLAYTIG 107
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 58.8 bits (136), Expect = 2e-09
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Frame = +1
Query: 154 FSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCD 333
F+ VL D +V FYAPWCG C R P+Y A +LK V AKV+C E C
Sbjct: 444 FTDVLASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLK---GKVRAAKVNC-EQDYGLCS 499
Query: 334 KFSVSGYPTLKIF----RKGELSSDYNGPRESNGIV 429
+ ++ YPT++++ R+G ++ NG + N V
Sbjct: 500 EANIHSYPTVRLYLGSTRQG-MTQSINGDLQLNSQV 534
Score = 52.4 bits (120), Expect = 2e-07
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +1
Query: 115 AAEEDVLDLTDSDF-SSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSL 291
+ +V L DF SSV V F+APWC C RL PEY AA PV
Sbjct: 281 SVSSNVHALGPEDFPSSVTSPSRPFFVDFFAPWCPPCMRLLPEYRKAARSFV--GKPVGF 338
Query: 292 AKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQ 447
VDCT + C ++++ YPT ++ + + G + I++++ +
Sbjct: 339 GTVDCTVHSQ-LCHQYNIRSYPTTILYNNSQ-PHQFIGHHNALDIIEFVEVE 388
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 298 VDCTEGGKSTCD-KFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYMRAQVGPSSR 465
+DC G++TC +F + +PTLK+FR G+ DY GP+++ + Y+ Q+G +
Sbjct: 237 MDCFGAGRATCYYRFGIHQWPTLKLFRYGQPWGDYTGPQDTASLESYIHDQLGDGKK 293
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Frame = +1
Query: 109 CSAAEEDVLDLTDSDFSSVLDQHDT-ALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPV 285
CS V ++T F ++ +D L++FY PWCG C P A +D V
Sbjct: 512 CSREIVCVTEVTTDSFDDIVINNDQDVLLVFYTPWCGMCINFAPVLLAVARFF-QDISQV 570
Query: 286 SLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDY----NGPRESNGIVKYM 438
S+ ++D + +VS YP++ +F G S N PR + +++++
Sbjct: 571 SVTRIDADQNDLPW--NLTVSSYPSIILFPAGRKDSSIAFPSNTPRTATRLIEFI 623
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 47.6 bits (108), Expect = 5e-06
Identities = 31/109 (28%), Positives = 54/109 (49%)
Frame = +1
Query: 112 SAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSL 291
S +E V LT + F ++ V FYAPWC HC +L P + A KD+ +++
Sbjct: 86 STSEAGVHILTKNTFDKHIEL-GLHFVKFYAPWCIHCIKLAPIWERLAEDF-KDNADITI 143
Query: 292 AKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVKYM 438
+K ++GYPTL +F+ G +Y+G R+ + + +++
Sbjct: 144 SK---------------INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 229 LKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGP 408
+ P + K+ +++AKVDCT + C K ++ YPT+K++ G++ Y G
Sbjct: 1 MMPAWEALGEQYSKEKRDLTIAKVDCTSD-VNLCVKQNIRAYPTMKLYYDGDIKR-YTGR 58
Query: 409 RES 417
R +
Sbjct: 59 RNA 61
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +1
Query: 130 VLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEY-AVAAGILKKDDPPVSLAKVDC 306
+++ T+ + +D + FYAPW HC+R+ + VA +DD + + K +
Sbjct: 28 IVEFTNENVDEYVDGSKFVFIFFYAPWDDHCQRILQIFDQVADEFADRDD--IVVGKSNA 85
Query: 307 TEGGKSTCDKFSVSGYPTLKIFRKGELSSD-YNGPRESNGIVKYMRAQ 447
E K ++ + YP + F KG + + Y+G + + ++++ A+
Sbjct: 86 YEDVK-IATRYWIDRYPMFRYFIKGSTTEETYDGGFKPDDFIRFIAAR 132
>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
Length = 664
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 157 SSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDK 336
SS L V FYAPWCG +R E+ +AA +L V+ ++C G S +K
Sbjct: 446 SSFLHNSPLNFVFFYAPWCGQSRRAVEEFNIAASLLY---GKVTFIAINCWAG--SCREK 500
Query: 337 FSVSGYPTLKIF 372
+++ +P ++
Sbjct: 501 YTLDSFPKFFVY 512
>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
Length = 229
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 283 VSLAKVDCTEGGKSTCDKFSVSGYPTLKIFRKGELSSDYNGPRESNGIVK 432
V LA+V+C + C +++ YPT+K+FRKG Y GP +++ +VK
Sbjct: 10 VRLARVNCFDW-TDVCQDNNITVYPTIKLFRKGADELIYGGPLDADHLVK 58
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 148 SDFSSVLDQHDTALVM--FYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTE 312
++F+SV++ LV+ FYA WCG C+++KP++ A KD V AK+D E
Sbjct: 19 AEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKD---VFFAKIDVDE 72
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 130 VLDLTDSDFSSVLDQHDTALVM--FYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVD 303
VL+L DS F++ L T LV+ F A WCG CK + P Y +G+ +K V L K+D
Sbjct: 11 VLEL-DSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVY---SGLSEKYKQAVFL-KID 65
Query: 304 CTEGGKSTCDKFSVSGYPTLKIFR 375
+ + K V+ PT + F+
Sbjct: 66 -VDVCQELAAKQGVTAMPTFQFFK 88
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 33.9 bits (74), Expect = 0.068
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 151 DFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVD 303
+F L ++ A + F A WCG C+ + P++ A K+ V AKVD
Sbjct: 3 EFDKFLKDNEVAAIDFTATWCGPCRMIGPKFEEMA----KEFKGVKCAKVD 49
>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 32.3 bits (70), Expect = 0.21
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 343 VSGYPTLKIFRKGELSSDYNGPRESNGIVKYM 438
++GYPTL +F+ G +Y+G R+ + + +++
Sbjct: 1 INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 30.7 bits (66), Expect = 0.64
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +1
Query: 145 DSDFSSVLDQHDTALVM--FYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGG 318
DS FS +++ + LV+ F A WCG CK + P + + +K D V KVD +
Sbjct: 16 DSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLS--MKFMD--VVFLKVD-VDQC 70
Query: 319 KSTCDKFSVSGYPTLKIFRKGELSSDYNG--PRESNGIVKYMRA 444
+ T + + PT + + G P +K +RA
Sbjct: 71 QLTAESCGIRAMPTFHFYHNKAKIDELRGADPGALENKIKELRA 114
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 167 NTDEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIK 54
NTD+ S +V ++S S ++ T + +K SDTD+ K
Sbjct: 89 NTDDNSNTVAKDSSISDMDYLRTKVTSSKTESDTDVNK 126
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 142 TDSDFSSVLDQHDT--ALVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAK 297
T +DF +L A+V F+APW HC ++ L K++P V+ K
Sbjct: 8 TVTDFDRILSSSSNVLAVVHFFAPWAPHCNQMND----VLEELAKENPHVNFIK 57
>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
Length = 213
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 187 LVMFYAPWCGHCKRLKPEYAVAAGILKKDDPPVSLAKVDCTEGGKSTCDKFSVSG 351
+++ WCG CK L+P++A + + + V E + D+F V G
Sbjct: 1 MILITKNWCGACKALRPKFAESKEVAQLSK---KFVMVHLQENEEPDGDEFRVDG 52
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 167 NTDEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDI-IKSRRQ 42
N K+ S R+ A EH +PS + F DT+ +K+R Q
Sbjct: 197 NLSGKALSHRAMFEKKAVEHAQVSPSMPRKFEDTEFSVKARSQ 239
>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
Length = 673
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 94 GLVYLCSAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGI 261
G V++ S+ +L +T+ D ++ +T + + GHC RL ++ V +G+
Sbjct: 155 GTVFVSSSKINTLLTMTEED---LITSDNTLTAISSSTDAGHCDRLDAQWNVPSGL 207
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 232 KPEYAVAAGILKKDDPPVSLAKVDCTEG 315
+P+YA+ L+ D P +AKV C G
Sbjct: 963 RPDYALRVSSLQDKDEPTKVAKVVCHVG 990
>SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +1
Query: 34 YNNCRRDLIMSVSLKSLF------LLGLVYLCSAAEEDVLDLTDSDFSSVLDQHDTAL 189
Y+ C L+ +S+ SL + L+Y C +L D+ +S+L +DT++
Sbjct: 177 YDTCTHSLLYDISMNSLLYDYDTSMDSLLYDCDTGMNSLLYDCDTSMNSLLYDYDTSM 234
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 94 GLVYLCSAAEEDVLDLTDSDFSSVLDQHDTALVMFYAPWCGHCKRLKPEYAVAAGI 261
G V++ S+ +L +T+ D ++ +T + + GHC RL ++ V +G+
Sbjct: 1087 GTVFVSSSKINTLLTMTEED---LITSDNTLTAISSSTDAGHCDRLDAQWNVPSGL 1139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,124
Number of Sequences: 59808
Number of extensions: 285551
Number of successful extensions: 906
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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