Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D04
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.94 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 YPTLKIFRKGELSSDYNGPRESNGIVKY 435
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKN 84
           D    S RS+TSS+  +++Y N + N
Sbjct: 96  DATGLSNRSSTSSNDPKNQYKNQNNN 121


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = +3

Query: 57  NYVGVTEIFIFTRISIFM 110
           NY G++++F+F  ++ ++
Sbjct: 112 NYTGISDLFVFDDLNDYI 129


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIKSR 48
           +EK+   R + S    +  Y N  + +++ +T   +SR
Sbjct: 31  EEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIKSR 48
           +EK+   R + S    +  Y N  + +++ +T   +SR
Sbjct: 31  EEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIKSR 48
           +EK+   R + S    +  Y N  + +++ +T   +SR
Sbjct: 31  EEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 161 DEKSESVRSNTSSSAAEHKYTNPSKNKDFSDTDIIKSR 48
           +EK+   R + S    +  Y N  + +++ +T   +SR
Sbjct: 31  EEKTSRKRYSRSREREQKSYKNEREYREYRETSRERSR 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,495
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)