Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D03
         (451 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   9.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   9.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 319 SLRGMNLPTYTFFPFSNIPLTFSIDLLAASSVS 221
           +L+G  + T  +  F N+P    +D LA +S+S
Sbjct: 146 NLKGNKIATIAYETFQNLPELEDLD-LAYNSIS 177


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 26  GTRHVVPTRSFSAQVWSW 79
           G+R+ + T S+   +W W
Sbjct: 118 GSRNPIHTSSYMTGIWVW 135


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 26  GTRHVVPTRSFSAQVWSW 79
           G+R+ + T S+   +W W
Sbjct: 351 GSRNPIHTSSYMTGIWVW 368


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 26  GTRHVVPTRSFSAQVWSW 79
           G+R+ + T S+   +W W
Sbjct: 351 GSRNPIHTSSYMTGIWVW 368


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 430 PYFSNISFNISSEKSSPKF 374
           PY+SN+ +  SS  S  +F
Sbjct: 257 PYYSNMDYLSSSTMSHSQF 275


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 291 YVGRFIPRKEREKELGE 341
           Y  + +  KEREKEL +
Sbjct: 209 YPIKLVVEKEREKELSD 225


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 41 VPTRSFSAQVWSWEC 85
          V +R   + +W W+C
Sbjct: 20 VSSRKSDSGIWYWQC 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,769
Number of Sequences: 336
Number of extensions: 2191
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)