Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D03
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 187 6e-49
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 77 2e-15
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 64 9e-12
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 64 1e-11
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 63 2e-11
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 57 1e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 4e-08
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 51 9e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 49 3e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 7e-07
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 47 1e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 45 6e-06
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 2e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 42 3e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 42 3e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 6e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 1e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 38 7e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 7e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 37 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.002
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 37 0.002
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 35 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.009
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.012
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.015
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.020
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.035
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.047
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 31 0.062
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.082
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.19
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 29 0.25
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.25
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 0.58
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 0.76
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 27 1.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 1.0
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 27 1.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 1.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 1.8
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 27 1.8
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.3
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 2.3
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 2.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 3.1
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 4.1
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 5.4
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 5.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 5.4
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.4
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 7.1
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.1
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 24 9.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 24 9.4
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 9.4
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 187 bits (456), Expect = 6e-49
Identities = 86/138 (62%), Positives = 106/138 (76%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R MWSQRDPSLRK G GNVFIKNLD IDNKA++DTFSAFG ILSCKVA DE G +KGYG
Sbjct: 152 RIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYG 211
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FVHF++ E+AN +IE VNGMLLN KKVYVG + R+ER+ ++ FTNVY+KN +
Sbjct: 212 FVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTE 271
Query: 390 FSDEMLKDMFEKYGRITS 443
+++ D+F ++G ITS
Sbjct: 272 ITEQEFSDLFGQFGEITS 289
Score = 95.1 bits (226), Expect = 4e-21
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 10/138 (7%)
Frame = +3
Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245
K+ NV+IKNLD I + D F FG I S + +D+ +G+GFV++ E A K
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKL-------FTNVYVKNFGEDFS 395
+++++N GKK+YVGR + ERE+EL E+ KL N+++KN ++
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 396 DEMLKDMFEKYGRITSHK 449
DE LK F +G ITS K
Sbjct: 377 DERLKAEFSAFGTITSAK 394
Score = 78.2 bits (184), Expect = 5e-16
Identities = 37/85 (43%), Positives = 54/85 (63%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+FIKNL +D++ + FSAFG I S K+ DE G SKG+GFV + T E ANK++ ++
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 261 NGMLLNGKKVYVGRFIPRKEREKEL 335
N +L GK +YV ++ R +L
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 56.4 bits (130), Expect = 2e-09
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
++++ LD ++ +++ F++ G + S +V +D T S GY +V+F E K++++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
+N L+ G+ + + R +++G NV++KN ++ L D F +G+I
Sbjct: 141 LNYTLIKGRPCRI-MWSQRDPSLRKMGTG-----NVFIKNLDPAIDNKALHDTFSAFGKI 194
Query: 438 TSHK 449
S K
Sbjct: 195 LSCK 198
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 76.6 bits (180), Expect = 2e-15
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSC-KVAQDETGASKGYGFVHFETEEAANKSIEK 257
N+F+ NLD +D + +YDTFSA G ++ +VA+DE G SKGYGFV +++ E A+ +IE
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350
+N L K + V R+ + + G+ A+
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGERHGDIAE 190
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 64.1 bits (149), Expect = 9e-12
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
G +FI L+ + ++ D F FG +L C V +D TG S+G+GF+ F+ + N+ +
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS 222
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434
K + L+GK + R IPR+E+EK AK+F V D ++E ++ F ++GR
Sbjct: 223 KEHH--LDGKIIDPKRAIPREEQEK----TAKMF----VGGVPGDCTEEEFRNFFNQFGR 272
Query: 435 I 437
+
Sbjct: 273 V 273
Score = 39.9 bits (89), Expect = 2e-04
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETE 230
P + +F+ + + + F+ FG +L + D +TG +G+GFV +E E
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Query: 231 EAANKSIEKVNGMLLNGKKVYVGRFIPR 314
A ++ + + ++GK V V R P+
Sbjct: 299 SAVEATMSQPY-ITIHGKPVEVKRATPK 325
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 63.7 bits (148), Expect = 1e-11
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Frame = +3
Query: 45 QRDPSLRKSGV--GNVFIKNLDKTIDN--KAMYDTFSAFGNILSCKVA-QDETGASKGYG 209
+ PS+ S + N+++KNLD T+ + D FS FG+ILS +A +G SKGYG
Sbjct: 369 ESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYG 428
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYV 296
FV F EAA ++ + +NGM++ K+++V
Sbjct: 429 FVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 357 TNVYVKNFGEDFSDEMLKDMFEKYGRITS 443
+ +YV N SDE + F KYG++ S
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 63.3 bits (147), Expect = 2e-11
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 81 NVFIKNLDKTI--DNKAMYDTFSAFGNILSCKVAQ-DETGASKGYGFVHFETEEAANKSI 251
N+F+KNLD I + + + + FS FG I SC +A T SKGYGFV F A ++I
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 252 EKVNGMLLNGKKVYVGRFIPRKEREKEL 335
+NG+L K+++V R++R+K L
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRL 507
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 57.2 bits (132), Expect = 1e-09
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+++ NL ++ + D F+ G+++ ++A + TG SKG+G V FE E A SIEK+N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 264 GMLLNGK 284
G G+
Sbjct: 342 GYRYGGR 348
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
V++ NL + + + GN+L+C++ G SKG + + T E A +I+ ++
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 264 GMLLNGKKVYV 296
G+ VY+
Sbjct: 128 NQKFMGRLVYI 138
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETE 230
PS + VF+ L +D++ + F +G I+ +V D ++G SKGYG+V FET
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 231 EAANKSIEKVNGMLLNGKKVYVGRFIPR 314
EAA ++ ++G+ V + PR
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Score = 38.7 bits (86), Expect = 4e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
VF+ NL + F G+I S ++ D ++G KG+G+V F ++A K +E +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 261 NGMLLNGKKVYVGRFIPR 314
NG + G+ + PR
Sbjct: 427 NGHFIAGRPCRLDFSTPR 444
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 50.8 bits (116), Expect = 9e-08
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L+ ++ + FS FG I+SC+V +D ETG S Y F+ F+ +E+ K+ K+
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 261 NGMLLNGKKVYV 296
+L++ +++V
Sbjct: 306 QNVLIDDSRIHV 317
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 49.2 bits (112), Expect = 3e-07
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTF-SAFGNILSCKVAQD-ETGASKGYGFVHF 221
R+ S+ K+ ++F+ +L ++ +Y F S + + S K+ D +T S+GYGFV F
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Query: 222 ETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKE 320
E ++ ++ G + + + VG P+ +
Sbjct: 236 TDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
Score = 35.1 bits (77), Expect = 0.005
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +3
Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
+Q P + VF+ L K + + + F FG I+ K+ KG GFV F
Sbjct: 291 AQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-----PGKGCGFVQF 345
Query: 222 ETEEAANKSIEKVNGMLLNGKKV 290
++A +I ++ G L ++
Sbjct: 346 VNRQSAEIAINQLQGYPLGNSRI 368
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 7e-07
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
VF+ L + ++ +YD F G + ++ +D+ +G SKG +V F E++ +I +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300
Query: 261 NGMLLNGKKVYVGRFIPRKERE-KELGEKAKL------FTNVYVKNFGEDFSDEMLKDMF 419
+G L G V V K R+ +E E A+ F + V N + +DE +K +F
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360
Query: 420 EKYGRI 437
E +G I
Sbjct: 361 EPFGDI 366
Score = 42.3 bits (95), Expect = 3e-05
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGM 269
+ N+ + ++ + F FG+I + +D+ SKG+G++ + +A ++EK+NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403
Query: 270 LLNGKKVYV 296
L G+ + V
Sbjct: 404 DLAGRNMRV 412
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 78 GNV-FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
GNV F+ N+ + + M + F+ G + + K+ D ETG+ KGYGF F E ++
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 252 EKVNGMLLNGKKVYV 296
K+N L +K+ V
Sbjct: 66 RKLNNSELGPRKIRV 80
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 44.8 bits (101), Expect = 6e-06
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
+K GV +++ L K M FS FG +L +++++ +TG+SK Y F+ FE+ + A
Sbjct: 102 KKKGV--LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVA 159
Query: 240 NKSIEKVNGMLLNGK 284
N E ++ LL GK
Sbjct: 160 NVVAETMHNYLLYGK 174
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 43.6 bits (98), Expect = 1e-05
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
V + NL ++ +Y+ F FG I+S + + E + Y FV F+ E A +++E +N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 264 GMLL 275
+L
Sbjct: 68 YSIL 71
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 2e-05
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
++I NLD ++ + FS FG + + +D ETG SKG+ F+ +E + + +++ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 261 NGMLLNGKKVYVGRF----IPRKERE 326
+ L + V V +P+KE+E
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKE 118
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 42.3 bits (95), Expect = 3e-05
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = +3
Query: 54 PSLRKSGVGNV-FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230
PS V ++ FIKNL I + MYD F +G + ++ T ++G FV +E
Sbjct: 3 PSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLG--NTVQTRGTAFVVYENV 60
Query: 231 EAANKSIEKVNGMLLNGKKVYVGRFIPRKER--EKELGEKAKLFTNVYVKNFGEDFSDEM 404
+ A ++ EK++G + + V + P + + ++L + L N +N +
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDLAARFPLSINSVEENIQQKNESAH 120
Query: 405 LKDMF 419
+K F
Sbjct: 121 IKQSF 125
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 75 VGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
+GN +F+ + + + FS FG + ++ ++ T AS+G+GF+ F T E A +
Sbjct: 99 LGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
Query: 249 IEKVNGMLLNGKKVYV 296
I+ +N G+ + V
Sbjct: 159 IDNLNSQEFYGRVLNV 174
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.5 bits (93), Expect = 6e-05
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F++NL + + FS G I V + ETG ++GYGFV F E A ++ +++
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 261 NGMLLNGKKVYVGRFIPRKERE 326
L+G+ + + PRK E
Sbjct: 67 KNKKLHGRILRLDFATPRKRSE 88
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDT-FSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
++R+ + I+NL +I + FS FG + K+ G G+ FV + +
Sbjct: 100 TIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRK 159
Query: 234 AANKSIEKVNGMLLNGKKVYV 296
AA +++ +NG ++G+ + V
Sbjct: 160 AAEEAMNSLNGTEIDGRPIAV 180
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
VF++NL + +Y+ F FG + K+ +D T S G GF+ F E+ +E
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 261 NGMLLNGKKVYVGRFIP 311
+ + RF+P
Sbjct: 339 SQLPTQEPTEAEKRFLP 355
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 150 GNILSCKVAQDETGA--SKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
G + KV ++ GA SKG+GF+ F + + A ++ +NG + KK+
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 1e-04
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGN----VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE 185
R R M DP + +G+ +F+ L + F+ +G I +V +++
Sbjct: 76 RERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNK 135
Query: 186 -TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
TG S GY FV FE E + + G++LNG+++ V
Sbjct: 136 VTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.9 bits (84), Expect = 7e-04
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257
NV+I+ L ++ + + FG + S K D ET KGYGF FE E++A +
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA---LIC 353
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
++ M L G Y F + + TN+Y+ N +++ + +F K +I
Sbjct: 354 ISAMTLCG---YQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLF-KPSKI 409
Query: 438 TSHK 449
S++
Sbjct: 410 ISNR 413
Score = 35.5 bits (78), Expect = 0.004
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 27 ARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY 206
A+ +S R SL+ + N++I NL N++ T I+S +V +D S+G
Sbjct: 367 AKESFSARLQSLQDTESTNLYISNLPLHW-NESDISTLFKPSKIISNRVLRDSKEQSRGV 425
Query: 207 GFVHFETEEAANKSIEKVNGMLLN 278
GF + + A I K N +L+
Sbjct: 426 GFARMQDRKTAEDIINKFNNFVLD 449
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 318 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
+ +K E NVY++ + SDE L ++G+++S K
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSK 326
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 7e-04
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVNG 266
+ NL + + D F FG I +A+D ETG +KG+ FV + + A K+ ++++G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+ +KN+ +++ + D F G + G +G F +F E A ++ +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 261 NGMLLNGKKVYV--GRFIPRKEREKELGEKAK 350
NG +NG+++ V R +P EREK EKAK
Sbjct: 264 NGYEINGRRLRVEWKRQLPAAEREKV--EKAK 293
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
VF+ L + K + F FG IL+ K+ KG GFV + + AA K+I +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP-----FGKGCGFVQYSEKSAAEKAINTMQ 353
Query: 264 GMLL 275
G L+
Sbjct: 354 GALV 357
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.7 bits (81), Expect = 0.002
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+++ N T D + FSA+GN++ + ++ + +V + A+ +++ +
Sbjct: 667 NLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQ-L 725
Query: 261 NGMLLNGK---KVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431
+ LL K +V++ + R R + E +L YV N +++ ++ F YG
Sbjct: 726 HKKLLEEKYPIQVFISDPLRRTPRSGAVYEGREL----YVTNIDFKVNEKDVETFFRDYG 781
Query: 432 RITS 443
++ S
Sbjct: 782 QVES 785
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 321 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
R E+ + + TN+YV NF + + + +F YG +
Sbjct: 654 RGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNV 692
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 36.7 bits (81), Expect = 0.002
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 69 SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKS 248
+G NV I+NL + + T FG IL+C+V D G K V F T +A +
Sbjct: 97 AGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQV-NDSQG--KVRASVRFSTLASAQQV 153
Query: 249 IEKVNGMLLNGKKV--YVGRFIPRKEREKE 332
++K++G+ +G K+ Y+ + ++ +K+
Sbjct: 154 VQKLDGVTADGFKLSCYIKKNSKKRRTQKK 183
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 34.7 bits (76), Expect = 0.007
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+FI N+ K +D+ M G + S + D + +GF FE+ E ++++E +N
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 264 GMLL 275
++
Sbjct: 201 DFVV 204
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.009
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGA-----SKGYGFVHFETEEAANK 245
+++KNL+ + + F LS + A+ + S G+GFV F+ + +A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 246 SIEKVNGMLLNGKKVYV----GRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
++ +NG +L+G K+ + E K+ K K T + +KN + + + ++
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK-GTKILIKNLPFEATKKDVQS 739
Query: 414 MFEKYGRITS 443
+ YG++ S
Sbjct: 740 LLGAYGQLRS 749
Score = 31.5 bits (68), Expect = 0.062
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET-EEAAN 242
+ IKNL K + A+G + S +V + +++G+ F F T EAAN
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAAN 776
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 33.9 bits (74), Expect = 0.012
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA--------------QDETGASKGYGFVH 218
++++ L T+ N+ + + F A+ N ++A + E +G+GFV
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAY-NPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264
Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK 344
F E +++IE++NG + + V + R++++ + EK
Sbjct: 265 FANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEK 306
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.015
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ-DETGASKGYGFVHFETEE 233
S +K +F+ NLD + + + F G I ++ ++TG KG+GFV F +
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Query: 234 AANKSIE 254
K++E
Sbjct: 281 TCMKAME 287
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +3
Query: 171 VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
+++++ +KG+ +V F TE+A +++ + LNG+ + +
Sbjct: 156 MSKEKRFQNKGFAYVDFATEDALKLALQ-CSEKALNGRNILI 196
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.1 bits (72), Expect = 0.020
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
V++ N+ + + + D F G + S ++ D E+G KGYGF + A ++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 261 N 263
N
Sbjct: 67 N 67
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.035
Identities = 14/72 (19%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKV 260
+ ++NL + + + + + F +G I + ++ +KGY ++ + + A +++K+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 261 NGMLLNGKKVYV 296
N L+G++++V
Sbjct: 161 NNAELDGEELFV 172
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.047
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+++ NL + + TFSA+G + S ++ + A F++F++ E A +E+
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSA-----FLNFDSVETAKHVLEE-- 641
Query: 264 GMLLNGKKVYVG 299
LNGK+++ G
Sbjct: 642 ---LNGKRIFFG 650
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 31.5 bits (68), Expect = 0.062
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 63 RKSGVGNVFIKNLD----KTIDNKAMYDTFSAFGNILSCKVAQDE 185
+K+G G+V I +L+ +TI NK+ FS F N++ K ++E
Sbjct: 215 QKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGKYLKEE 259
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.082
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
R + R + + P R++G + ++NL + + + + D G ++ GA
Sbjct: 79 RENFRESAASKYPRPRRTGF-RLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGA- 136
Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
G V F TEE ++ +NG ++ G+ V
Sbjct: 137 ---GVVEFSTEEDMRNALTSLNGEVIKGQAV 164
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.9 bits (64), Expect = 0.19
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
NVFI NL + K + + F FG I K+ + K FVHF
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-----SKKNIAFVHF 341
Score = 26.6 bits (56), Expect = 1.8
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 210 FVHFETEEAANKSIEKV--NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKN 377
FV F T AAN + + +LL+G+++ VG + L + + NVY +
Sbjct: 447 FVTFITYSAANAFHDYLAEEEVLLHGRRIKVGWGKESGPLPRVLEDSILMGASRNVYFSH 506
Query: 378 FGEDFSDEMLKDMFEKYGRITSHK 449
+ + E L+ + +YG I S K
Sbjct: 507 ISDSLTTEELELILRQYGEIESIK 530
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 264 GMLLNGK--KVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
G + +G+ K+ R P E + NV++ N + ++ +++ F K+G+I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 29.5 bits (63), Expect = 0.25
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 150 GNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
G I + ++ +D+ KG FV F+ + ANK +EKV
Sbjct: 181 GPISAVRMRRDDDKKFKGSVFVEFKEPDVANKFLEKV 217
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.25
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 PPGCRNSARGMWSQRDP-SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD 182
P R G QRD + + NL + + D F + S ++ D
Sbjct: 69 PESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVID 126
Query: 183 E-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332
T S+G+G+V FET + + ++ ++G L G+ V + PR+ +E
Sbjct: 127 PLTERSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAEPRRSFARE 176
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 0.58
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE----AANKS 248
+VF+KN+ + ++ S FG + + + A+ KG +V F E A NK
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAIEFAR-----RKGTAYVDFVNHECVQLALNKK 370
Query: 249 IEKVNGMLLN---GKKVYVGRF 305
++N LN ++++ G+F
Sbjct: 371 TLQINNATLNIEERRRLFSGKF 392
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 0.76
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 160 NMFPNAENVSYIALLSIVLSRFLIKTFPTPD 68
N F + N Y++ ++V SRF TFP+ D
Sbjct: 262 NYFLDLNNAEYVSHFALVHSRFSTNTFPSWD 292
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 361 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 242
++ L FSP S R +N+ YT F IP S++L
Sbjct: 89 MLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNL 128
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.5 bits (58), Expect = 1.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 270 LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY-GRITS 443
+LNG +YV F+P K R L + L +V GE+ + K M Y G++ S
Sbjct: 313 ILNGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCPLYPGEENPFKRFKIMLTVYTGKVIS 371
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 309 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
P E EK++ +KAKL N + G+ ++ +D
Sbjct: 625 PSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD 659
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437
N+Y+ N + + E LK+ FE++G I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N++I N D ++ + + + F FG I ++ K FV+F + +A +I+++
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFFRE-----KNCAFVNFTSLASAINAIDRI 469
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 36 MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGN-ILSCKVAQDETGA 194
+W+ + + SG V + I K DTF AFGN I K A+ TGA
Sbjct: 970 VWAVNNGHMTPSGHNWVSGQGSGPRIQEKEEGDTFDAFGNKIEKAKKAKKLTGA 1023
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLD-KTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+F+ +L+ K++ + ++ F +G + AQ A+ YGFV F T E +++
Sbjct: 365 LFLGHLNTKSLSKRNLWKVFKIYGPL-----AQIVLKAN--YGFVQFFTNEDCARALNAE 417
Query: 261 NGMLLNGKKVYV 296
G + G+K+++
Sbjct: 418 QGNFVRGQKLHL 429
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 304 NLPTYTFFPFSNIPLTFSIDLLAASSVSK*TNPYPFEAPVSSCATLQ 164
N PT TFFP S+ T + + + S + + P AP+ A+ +
Sbjct: 451 NSPTSTFFPQSSFGQTIAKNTMDKPSAVRTSVPSQLAAPIPQVASAE 497
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 291 YVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
YV F+PR KEL + Y+ NF
Sbjct: 187 YVAAFLPRNTDVKELAAYGSIHNKPYITNF 216
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 361 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 242
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 361 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 242
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 361 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 242
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 2.3
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +3
Query: 117 NKAMYDTFSAFGNILSCK----VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGK 284
N ++ D F F N + K + D K Y V EE K + K NG L N +
Sbjct: 54 NVSLEDIFQDFLNFIITKNQEMFSMDCNSICKSY--VLKVAEEKIEKLL-KENGTLKNEE 110
Query: 285 KVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEM 404
K + + ++E L +K ++ K+F ++ DE+
Sbjct: 111 KCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRKNMEDEL 150
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 237 ANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362
A +S + V ++NG PR ++ ELG K +F N
Sbjct: 518 AVESGDVVKATIVNGPAAPYAEDRPRHKKNPELGNKKSIFAN 559
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRK 68
RNSAR MW+Q S+RK
Sbjct: 144 RNSARQMWAQLMASVRK 160
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 108 TIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE--EAANKSIEKVNGMLLNG 281
++ + A+Y ++ LS K + + F+ + EAAN K+ + LN
Sbjct: 145 SVADLAVYARIHSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSMKLANIDLNA 204
Query: 282 KKVYVGRFIPRKEREKELGEKAK 350
K+ I + ++EK+ G+ ++
Sbjct: 205 PKIQRPSVIKKDKKEKKEGKPSQ 227
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 180 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT 359
D+T ++ E E + + E L+ GK ++VG+ ++ GE+A +
Sbjct: 224 DDTNVNEFEDVNEIENEHQLSVADEDQTSRLVKGKMIFVGK--------EDFGEEADISN 275
Query: 360 NVYVKNFG 383
+V+++ G
Sbjct: 276 SVFIEQNG 283
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 377
G V TE + +N LL+ KKV F P + + ++ K FTN VKN
Sbjct: 549 GAVADTTELKEHPFFADINWDLLSKKKVQPP-FKPNVQNDLDVSNFDKEFTNTNVKN 604
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 206 ISFRSTSFILCYFTAQYVPKC*ECVIHSFIVNSFVKVFN 90
+SF +++++ Y+ +YV K +I FI K FN
Sbjct: 147 VSFGLSAYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFN 185
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 439 VMRPYFSNISFNISSEKSSPKFFT*TLVNNLAFSPNSFSRSLRGMNL 299
V P+FS I + S S PK T + + P +R G+ L
Sbjct: 239 VSLPFFSKIELDEGSSFSGPKISARTSSGKIIYFPKKKNRHSDGLLL 285
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
++V N G D +DE L F +Y + K
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTK 60
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 15 CRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTI--DNKAMYDTFSAFGNILSCK 170
C +S + + + PS+ + N +++ + + + K +Y SAF N+L C+
Sbjct: 283 CIHSLKEIQPFKCPSIMVKDLENSLLQSNIRNVGYEKKNLYYISSAFSNLLHCR 336
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -1
Query: 187 VSSCAT----LQLNMFPNAENVSYIAL 119
+SSC T LQL + NAE+++YI +
Sbjct: 882 ISSCHTMLQLLQLRVAKNAEDIAYITI 908
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY 206
+++ NL + A++ FSA+GN+ + + A Y
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSY 42
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 432 DHIFQTYLSTFHLKNLLQNFLHKH 361
D+ + YL+ + LLQN LH++
Sbjct: 122 DYFSKEYLTAYRRSELLQNKLHEY 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,437
Number of Sequences: 5004
Number of extensions: 37863
Number of successful extensions: 204
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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