Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D03
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   0.88 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   4.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   4.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   6.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.2  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 300 RFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF 419
           R +  K R+K +GE      +V    +GE   DE LK  F
Sbjct: 33  REMTSKYRKKCIGETKTTIEDVEATEYGEFPEDEKLKCYF 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 30   RGMWSQRDPSLRKSGVGNVFIKNLDKT 110
            RG   Q    LR+   G++FIK +D+T
Sbjct: 1313 RGAVLQSSDRLRQLPEGSLFIKEVDRT 1339


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 345 PFHPIPFHAPCEE 307
           P  P+P H  CE+
Sbjct: 440 PLPPLPLHTECED 452


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 345 PFHPIPFHAPCEE 307
           P  P+P H  CE+
Sbjct: 440 PLPPLPLHTECED 452


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 297 GRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 407
           GR   R ERE+    K     N   KN+  +++ + L
Sbjct: 287 GRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 297 GRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 407
           GR   R ERE+    K     N   KN+  +++ + L
Sbjct: 298 GRSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKL 334


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK 344
           +GY F    TE    +  EKV+  L   +    G F P     KE  +K
Sbjct: 115 EGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQK 163


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK 344
           +GY F    TE    +  EKV+  L   +    G F P     KE  +K
Sbjct: 131 EGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQK 179


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 55  GSRWDHMPRAEFLQPGGS 2
           G + +   + EFL PGGS
Sbjct: 59  GIKCEIYAKCEFLNPGGS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,810
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)