BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_D03 (451 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 180 4e-46 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 173 6e-44 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 170 4e-43 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 157 2e-39 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 139 9e-34 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 135 1e-32 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 118 2e-27 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 100 9e-22 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 70 6e-13 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 66 1e-11 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 64 6e-11 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 64 6e-11 At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 62 2e-10 At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 62 2e-10 At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 60 5e-10 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 60 5e-10 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 60 7e-10 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 60 9e-10 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 60 9e-10 At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 59 1e-09 At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 59 1e-09 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 59 1e-09 At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 58 4e-09 At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 57 5e-09 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 57 5e-09 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 57 5e-09 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 8e-09 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 56 1e-08 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 56 1e-08 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 56 1e-08 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 56 1e-08 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08 At5g51300.2 68418.m06360 splicing factor-related contains simila... 55 2e-08 At5g51300.1 68418.m06359 splicing factor-related contains simila... 55 2e-08 At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 55 2e-08 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 55 2e-08 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 55 2e-08 At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 55 3e-08 At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 55 3e-08 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 3e-08 At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 54 3e-08 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 54 4e-08 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 54 4e-08 At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 54 6e-08 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 54 6e-08 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 54 6e-08 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 53 8e-08 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 53 1e-07 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 1e-07 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 52 1e-07 At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 52 2e-07 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 52 2e-07 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 52 2e-07 At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 51 3e-07 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 51 3e-07 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 51 4e-07 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 50 7e-07 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 7e-07 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 50 7e-07 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 50 7e-07 At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 50 7e-07 At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 50 1e-06 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 49 2e-06 At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 49 2e-06 At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06 At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 49 2e-06 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 3e-06 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 48 3e-06 At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 48 3e-06 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 48 3e-06 At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 48 3e-06 At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 3e-06 At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 48 4e-06 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 47 5e-06 At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 47 5e-06 At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 47 5e-06 At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 47 7e-06 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 47 7e-06 At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 9e-06 At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 46 2e-05 At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 46 2e-05 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 2e-05 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 2e-05 At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 46 2e-05 At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 45 3e-05 At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 45 3e-05 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 4e-05 At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 44 5e-05 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 44 6e-05 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 44 6e-05 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 44 6e-05 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 8e-05 At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 43 8e-05 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 8e-05 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 43 8e-05 At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 1e-04 At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 42 2e-04 At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 42 2e-04 At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 42 2e-04 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 2e-04 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 2e-04 At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 42 2e-04 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 2e-04 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 2e-04 At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 2e-04 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 3e-04 At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 41 3e-04 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 41 3e-04 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 41 3e-04 At2g47310.1 68415.m05906 flowering time control protein-related ... 41 3e-04 At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 41 3e-04 At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 41 3e-04 At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 41 4e-04 At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 41 4e-04 At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 6e-04 At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04 At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04 At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 40 8e-04 At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 40 8e-04 At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 8e-04 At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 8e-04 At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 8e-04 At4g10610.1 68417.m01735 RNA-binding protein, putative 40 0.001 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.002 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 39 0.002 At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.002 At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 38 0.002 At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 38 0.002 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 38 0.002 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 38 0.002 At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.003 At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 38 0.003 At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 38 0.004 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 37 0.005 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 37 0.005 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 37 0.005 At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.005 At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.005 At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 37 0.007 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 37 0.007 At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.007 At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.007 At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.013 At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.013 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.017 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.017 At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 36 0.017 At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 36 0.017 At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.017 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.022 At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 35 0.022 At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 35 0.022 At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 35 0.029 At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.029 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.039 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.039 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.039 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 34 0.039 At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.039 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.051 At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 34 0.051 At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 33 0.067 At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 33 0.067 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.067 At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 33 0.089 At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 33 0.089 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.089 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.089 At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 33 0.12 At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12 At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12 At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.16 At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.16 At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.36 At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 31 0.36 At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 30 0.63 At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 30 0.63 At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 30 0.83 At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 30 0.83 At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 1.1 At2g15500.1 68415.m01774 hypothetical protein 29 1.1 At3g12930.1 68416.m01611 expressed protein contains Pfam domain ... 29 1.5 At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 1.5 At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.9 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 1.9 At3g32050.1 68416.m04075 hypothetical protein 29 1.9 At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 2.5 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 4.4 At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 27 4.4 At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) ide... 27 5.9 At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p... 27 5.9 At1g61460.1 68414.m06925 S-locus protein kinase, putative contai... 27 5.9 At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 27 5.9 At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 7.7 At4g16295.1 68417.m02472 self-incompatibility protein-related si... 27 7.7 At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein sim... 27 7.7 At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 27 7.7 At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 27 7.7 At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 27 7.7 At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 27 7.7 At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 27 7.7 At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 27 7.7 At1g72580.1 68414.m08393 hypothetical protein 27 7.7 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 180 bits (438), Expect = 4e-46 Identities = 88/138 (63%), Positives = 110/138 (79%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209 R M+S RDPSLRKSGVGN+FIKNLDK+ID+KA+++TFSAFG ILSCKVA D +G SKGYG Sbjct: 117 RVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYG 176 Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 FV ++T+EAA +I+K+NGMLLN K+VYVG F+ + +R+ GEK K FTNVYVKN E Sbjct: 177 FVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS-GEKVK-FTNVYVKNLSES 234 Query: 390 FSDEMLKDMFEKYGRITS 443 SDE L +F ++G TS Sbjct: 235 LSDEELNKVFGEFGVTTS 252 Score = 99 bits (238), Expect = 7e-22 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 10/145 (6%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 QRDPS K NV++KNL +++ ++ + F FG SC + +D G SKG+GFV+FE Sbjct: 213 QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF----------TNVYVK 374 + A ++++ +NG + K+ +VG+ + ERE EL +K + +N+YVK Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332 Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449 N E +D+ L++ F +G ITS K Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCK 357 Score = 75.4 bits (177), Expect = 2e-14 Identities = 36/88 (40%), Positives = 56/88 (63%) Frame = +3 Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245 KS N+++KNLD+++ + + + F+ FG I SCKV +D +G S+G GFV F T E A + Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382 Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREK 329 +I ++NG ++ K +YV RKE K Sbjct: 383 AITEMNGKMIVTKPLYVA-LAQRKEDRK 409 Score = 65.7 bits (153), Expect = 1e-11 Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +3 Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242 + G ++++ +LD T+ + +++ F+ G ++S +V +D T S GYG+V++ T + A+ Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100 Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422 +++ ++N M LNG+ + V + R+ L + N+++KN + + L + F Sbjct: 101 RALNELNFMALNGRAIRVMYSV----RDPSLRKSG--VGNIFIKNLDKSIDHKALHETFS 154 Query: 423 KYGRITSHK 449 +G I S K Sbjct: 155 AFGPILSCK 163 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 173 bits (420), Expect = 6e-44 Identities = 83/138 (60%), Positives = 101/138 (73%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209 R M S RDPS R SG GNVFIKNLD +IDNKA+Y+TFS+FG ILSCKVA D G SKGYG Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 175 Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 FV FE EE A +I+K+NGMLLN K+V+VG F+ R++R + FTNVYVKN ++ Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKE 235 Query: 390 FSDEMLKDMFEKYGRITS 443 +D+ LK F KYG I+S Sbjct: 236 ITDDELKKTFGKYGDISS 253 Score = 100 bits (239), Expect = 5e-22 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 10/133 (7%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 NV++KNL K I + + TF +G+I S V +D++G S+ +GFV+F + EAA ++EK+ Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK---------AKL-FTNVYVKNFGEDFSDEMLK 410 NG+ L +YVGR + +RE+EL K KL +N+Y+KN + +DE LK Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345 Query: 411 DMFEKYGRITSHK 449 +MF +YG +TS K Sbjct: 346 EMFSEYGNVTSCK 358 Score = 72.5 bits (170), Expect = 1e-13 Identities = 32/95 (33%), Positives = 60/95 (63%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 N+++KNLD +++++ + + FS +GN+ SCKV + G S+G+GFV + E A +++++ Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365 NG ++ K +YV ++ER+ L LFT + Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHL---QSLFTQI 420 Score = 52.8 bits (121), Expect = 1e-07 Identities = 28/123 (22%), Positives = 62/123 (50%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 ++++ +LD +++ + D F+ + + +V +D T S GY +V+F E A++++E + Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440 N + + + + + ++ L K NV++KN ++ L + F +G I Sbjct: 106 NYAPIRDRPIRI--MLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSSFGTIL 159 Query: 441 SHK 449 S K Sbjct: 160 SCK 162 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 170 bits (413), Expect = 4e-43 Identities = 80/138 (57%), Positives = 103/138 (74%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209 R M S RDPS R SG GN+FIKNLD +IDNKA+++TFS+FG ILSCKVA D TG SKGYG Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179 Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 FV FE EE+A +I+K+NGML+N K+V+VG FI R+ER ++ FTNVYVKN ++ Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKE 239 Query: 390 FSDEMLKDMFEKYGRITS 443 ++ L+ F K+G I+S Sbjct: 240 IGEDELRKTFGKFGVISS 257 Score = 103 bits (246), Expect = 7e-23 Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 10/144 (6%) Frame = +3 Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227 RD + NV++KNL K I + TF FG I S V +D++G S+ +GFV+FE Sbjct: 219 RDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFEC 278 Query: 228 EEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL-----GEKAKLF-----TNVYVKN 377 EAA ++EK+NG+ L +YVGR + ERE+EL E+ F N+Y+KN Sbjct: 279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKN 338 Query: 378 FGEDFSDEMLKDMFEKYGRITSHK 449 + DE LK+MF +YG +TS K Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSK 362 Score = 69.7 bits (163), Expect = 8e-13 Identities = 30/97 (30%), Positives = 58/97 (59%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 +R KS N+++KNLD ++D++ + + FS +GN+ S KV + G S+G+GFV + Sbjct: 321 ERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 335 E A +++ ++NG ++ K +Y+ +++R L Sbjct: 381 NPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417 Score = 51.2 bits (117), Expect = 3e-07 Identities = 27/123 (21%), Positives = 59/123 (47%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +++ +LD + ++D F N++S +V +D+ S GY +++F A +++E + Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440 N L + + + + ++ L K N+++KN ++ L + F +G I Sbjct: 110 NYTPLFDRPIRI--MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTIL 163 Query: 441 SHK 449 S K Sbjct: 164 SCK 166 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 157 bits (382), Expect = 2e-39 Identities = 73/135 (54%), Positives = 100/135 (74%) Frame = +3 Query: 39 WSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVH 218 +S RD S R+SGVGN+F+KNLDK++DNK +++ FS G I+SCKVA D G S+GYGFV Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180 Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSD 398 F+TE++A +IEK+NG +LN K+++VG F+ RKE + +K K FTNVYVKN E +D Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFL-RKEERESAADKMK-FTNVYVKNLSEATTD 238 Query: 399 EMLKDMFEKYGRITS 443 + LK F +YG I+S Sbjct: 239 DELKTTFGQYGSISS 253 Score = 89.8 bits (213), Expect = 7e-19 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 10/145 (6%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 +R+ + K NV++KNL + + + TF +G+I S V +D G S+ +GFV+FE Sbjct: 214 ERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFE 273 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT----------NVYVK 374 E A +++E +NG + K+ YVG+ + ERE EL + + + N+YVK Sbjct: 274 NPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVK 333 Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449 N + +DE L+++F ++G ITS K Sbjct: 334 NLDDTVTDEKLRELFAEFGTITSCK 358 Score = 77.4 bits (182), Expect = 4e-15 Identities = 34/101 (33%), Positives = 59/101 (58%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 N+++KNLD T+ ++ + + F+ FG I SCKV +D +G SKG GFV F A++ + ++ Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383 NG ++ GK +YV ++ER +L + ++ G Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429 Score = 60.1 bits (139), Expect = 7e-10 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 ++++ +LD + + +YD F+ ++S +V +D T S GYG+V++ + A K+++K Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106 Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 +N LNGK + + + R + G N++VKN + ++ L + F G I Sbjct: 107 LNYSYLNGKMIRI-TYSSRDSSARRSG-----VGNLFVKNLDKSVDNKTLHEAFSGCGTI 160 Query: 438 TSHK 449 S K Sbjct: 161 VSCK 164 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 139 bits (336), Expect = 9e-34 Identities = 64/138 (46%), Positives = 97/138 (70%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209 R MWS R P R++GVGNVF+KNL +++ N + D F FGNI+SCKVA E G S+GYG Sbjct: 96 RVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYG 155 Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 FV FE E+AA+ +I+ +N ++ K++YVG+F+ + +R K EK +TN+Y+KN D Sbjct: 156 FVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP-EEK---YTNLYMKNLDAD 211 Query: 390 FSDEMLKDMFEKYGRITS 443 S+++L++ F ++G+I S Sbjct: 212 VSEDLLREKFAEFGKIVS 229 Score = 87.4 bits (207), Expect = 4e-18 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 10/133 (7%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 N+++KNLD + + + F+ FG I+S +A+DE +GY FV+F+ E A ++ E V Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261 Query: 261 NGMLLNGKKVYVGRFIPRKERE-------KELGEKAKLF---TNVYVKNFGEDFSDEMLK 410 NG K +YVGR + ERE KE E+ K+ +N+YVKN ++E L+ Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321 Query: 411 DMFEKYGRITSHK 449 F + G ITS K Sbjct: 322 KHFSQCGTITSTK 334 Score = 71.3 bits (167), Expect = 3e-13 Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 2/125 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257 ++++ +L ++ +YD F+ F ++ S ++ +D +G S YG+ +F + + AN +IEK Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84 Query: 258 VNGMLLNGKKVYVGRFIPRKE-REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434 N LLNGK + V + + R +G NV+VKN E ++ +L+DMF+K+G Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG-------NVFVKNLPESVTNAVLQDMFKKFGN 137 Query: 435 ITSHK 449 I S K Sbjct: 138 IVSCK 142 Score = 65.3 bits (152), Expect = 2e-11 Identities = 30/87 (34%), Positives = 52/87 (59%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254 V N+++KN++ + + + FS G I S K+ DE G SKG+GFV F T E A +++ Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362 Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKEL 335 +G + +GK +YV +++R+ +L Sbjct: 363 TFHGQMFHGKPLYVAIAQKKEDRKMQL 389 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 135 bits (327), Expect = 1e-32 Identities = 68/138 (49%), Positives = 95/138 (68%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209 R M+S+RDPS R SG GNVF+KNLD++IDNK + D FSAFG +LSCKVA+D +G SKGYG Sbjct: 15 RIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYG 74 Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 FV F ++ + + NG L+ + ++V F+ R + +K+++FTNVYVKN E Sbjct: 75 FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ-----WDKSRVFTNVYVKNLVET 129 Query: 390 FSDEMLKDMFEKYGRITS 443 +D LK +F ++G ITS Sbjct: 130 ATDADLKRLFGEFGEITS 147 Score = 84.2 bits (199), Expect = 4e-17 Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 11/134 (8%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 NV++KNL +T + + F FG I S V +D G S+ +GFV+FE EAA +IEK+ Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKL-----------FTNVYVKNFGEDFSDEML 407 NG++++ K+++VGR + R ++L K +L N+YVKN + + L Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239 Query: 408 KDMFEKYGRITSHK 449 +++F ++G ITS K Sbjct: 240 EELFSEFGTITSCK 253 Score = 80.6 bits (190), Expect = 4e-16 Identities = 39/83 (46%), Positives = 54/83 (65%) Frame = +3 Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227 RD RK G+ N+++KNLD ++DN + + FS FG I SCKV G SKG GFV F T Sbjct: 215 RDMKTRK-GM-NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272 Query: 228 EEAANKSIEKVNGMLLNGKKVYV 296 E A+K++ K+NG ++ K +YV Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYV 295 Score = 32.3 bits (70), Expect = 0.16 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449 NV+VKN E ++ L DMF +G++ S K Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCK 61 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 118 bits (284), Expect = 2e-27 Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 3/141 (2%) Frame = +3 Query: 30 RGMWSQRDPSLRK---SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200 R MWSQRD + R+ +G N+++KNLD +I + + F FG+ILSCKV + E G SK Sbjct: 93 RIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSK 151 Query: 201 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380 G+GFV F+TE++A + ++G ++ GKK++V +FI + ER G + TNVYVKN Sbjct: 152 GFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS--TNVYVKNL 209 Query: 381 GEDFSDEMLKDMFEKYGRITS 443 E +D+ L +F +YG ++S Sbjct: 210 IETVTDDCLHTLFSQYGTVSS 230 Score = 91.5 bits (217), Expect = 2e-19 Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 9/132 (6%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 NV++KNL +T+ + ++ FS +G + S V +D G S+G+GFV+F E A K++E + Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK------AK---LFTNVYVKNFGEDFSDEMLKD 413 G+ L KK++VG+ + + ER + L +K AK ++N+YVKN E ++ L++ Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322 Query: 414 MFEKYGRITSHK 449 +F YG+I S K Sbjct: 323 IFGCYGQIVSAK 334 Score = 62.9 bits (146), Expect = 1e-10 Identities = 33/89 (37%), Positives = 54/89 (60%) Frame = +3 Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233 P++R S N+++KNL ++++ + + F +G I+S KV E G SKG+GFV F E Sbjct: 299 PNMRWS---NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355 Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKE 320 + ++ +NG L++GK + V R RKE Sbjct: 356 ESKQAKRYLNGFLVDGKPIVV-RVAERKE 383 Score = 50.0 bits (114), Expect = 7e-07 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Frame = +3 Query: 69 SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANK 245 S G++++ +L + K + D FS ++S + ++ TG S Y +++F++ +A+ Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77 Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL-FTNVYVKNFGEDFSDEMLKDMFE 422 ++ ++N L GK + I +R+ + + F N+YVKN + L+ MF Sbjct: 78 AMTRLNHSDLKGKAMR----IMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133 Query: 423 KYGRITSHK 449 +G I S K Sbjct: 134 PFGSILSCK 142 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 99.5 bits (237), Expect = 9e-22 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 10/145 (6%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 +RD + K+ NV++KNL ++ + + + F +G I S V +D G SKG+GFV+FE Sbjct: 18 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE--------LGEKAKLF--TNVYVK 374 + A +++E +NG + K+ YVGR + ERE E L E A F +N+YVK Sbjct: 78 NADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 137 Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449 N SDE LK++F +G +TS K Sbjct: 138 NLDPSISDEKLKEIFSPFGTVTSSK 162 Score = 69.7 bits (163), Expect = 8e-13 Identities = 32/80 (40%), Positives = 51/80 (63%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 N+++KNLD +I ++ + + FS FG + S KV +D G SKG GFV F T E A +++ ++ Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 192 Query: 261 NGMLLNGKKVYVGRFIPRKE 320 +G ++ K +YV RKE Sbjct: 193 SGKMIESKPLYVA-IAQRKE 211 Score = 63.7 bits (148), Expect = 6e-11 Identities = 33/59 (55%), Positives = 42/59 (71%) Frame = +3 Query: 267 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS 443 MLLN K+VYVG F+ R+ER+ K K FTNVYVKN E +D+ LK+ F +YG+ITS Sbjct: 1 MLLNDKQVYVGPFLRRQERDST-ANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITS 57 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 70.1 bits (164), Expect = 6e-13 Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 2/92 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILS-CKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 N+FI NLD +D K +YDTFSAFG I S K+ +D +TG S+G+GF+ +++ EA++ +IE Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350 + G L+ +++ V + + + G A+ Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTKGERHGTPAE 204 Score = 55.6 bits (128), Expect = 1e-08 Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Frame = +3 Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEE 233 S ++ V++ LD + + +++ F G +++ V +D T + YGF+ + +EE Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77 Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413 A+ +I+ +N + L+GK + V + + ++ ++G N+++ N D +++L D Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK-ASQDKKSLDVG------ANLFIGNLDPDVDEKLLYD 130 Query: 414 MFEKYGRITSH 446 F +G I S+ Sbjct: 131 TFSAFGVIASN 141 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 66.1 bits (154), Expect = 1e-11 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNI-LSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +F+ NL +D++A+ F G + +S + +T S+G+GFV T E A K++EK Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 N +NG+++ V R PR R + +YV N D L+ +F ++G++ Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233 Score = 53.2 bits (122), Expect = 8e-08 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGA 194 R + RG +R P + + +++ NL +D+ + FS G ++ +V D ETG Sbjct: 188 RAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGR 246 Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 S+G+GFV E N +I ++G L G+ + V Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 63.7 bits (148), Expect = 6e-11 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+FI N+ + +++ + TF FG +LS KV D+ TG SK +GF+ ++++ AA +I Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399 Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365 +NG L+GKK+ V +++++ K LF + Sbjct: 400 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 435 Score = 37.1 bits (82), Expect = 0.005 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ L K + + FS +G I ++ + SKG F+ +E++E A ++E +N Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170 Query: 264 GM-LLNGKKV 290 G ++ G V Sbjct: 171 GRHIMEGANV 180 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 63.7 bits (148), Expect = 6e-11 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+FI N+ + +++ + TF FG +LS KV D+ TG SK +GF+ ++++ AA +I Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390 Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365 +NG L+GKK+ V +++++ K LF + Sbjct: 391 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 426 Score = 37.1 bits (82), Expect = 0.005 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ L K + + FS +G I ++ + SKG F+ +E++E A ++E +N Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 161 Query: 264 GM-LLNGKKV 290 G ++ G V Sbjct: 162 GRHIMEGANV 171 >At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 358 Score = 62.1 bits (144), Expect = 2e-10 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 G +FI L K N F +G I + +D TG +G+GF+ F +K IE Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78 Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431 + ++NGK+V + R IP+ + + K K ++V +++ LKD F KYG Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133 Query: 432 RITSHK 449 + H+ Sbjct: 134 NVVEHQ 139 Score = 50.4 bits (115), Expect = 5e-07 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ + T+ + D F+ +GN++ +V +D ET S+G+GFV F++EE ++ + K Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170 Query: 261 NGMLLNGKKVYVGRFIPRK 317 N + + +V + + P+K Sbjct: 171 NMIDMADTQVEIKKAEPKK 189 >At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 231 Score = 62.1 bits (144), Expect = 2e-10 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 G +FI L K N F +G I + +D TG +G+GF+ F +K IE Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78 Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431 + ++NGK+V + R IP+ + + K K ++V +++ LKD F KYG Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133 Query: 432 RITSHK 449 + H+ Sbjct: 134 NVVEHQ 139 Score = 47.6 bits (108), Expect = 4e-06 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ + T+ + D F+ +GN++ +V +D ET S+G+GFV F++EE ++ + K Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170 Query: 261 N 263 N Sbjct: 171 N 171 >At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 60.5 bits (140), Expect = 5e-10 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 1/138 (0%) Frame = +3 Query: 27 ARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKG 203 + G S+R S +F+ NL ++++A+ F G + +V + ET S+G Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192 Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383 +GFV + + A ++EK N LNG+ + V + PR R + + VYV N Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252 Query: 384 EDFSDEMLKDMFEKYGRI 437 D + L+ +F ++G++ Sbjct: 253 WDVDNGRLEQLFSEHGKV 270 Score = 52.0 bits (119), Expect = 2e-07 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Frame = +3 Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGY 206 RG +R P + + V++ NL +DN + FS G ++ +V D ETG S+G+ Sbjct: 229 RGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287 Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 GFV + N++I ++G L G+ + V Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRV 317 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 60.5 bits (140), Expect = 5e-10 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 ++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++ Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257 Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398 ++NG+ + + + +G PRK +++ G E + T ++V +D Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317 Query: 399 EMLKDMFEKYGRITSHK 449 E LK F ++G I S K Sbjct: 318 EDLKQPFNEFGEIVSVK 334 Score = 47.2 bits (107), Expect = 5e-06 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254 +++ +L +D + +F++ I+S KV +++ G S+GYGFV FE+ + A+K + Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162 Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428 + NG + N + + + EK L E +++V + D SD +L + F EKY Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221 Query: 429 GRITSHK 449 + + K Sbjct: 222 PSVKAAK 228 Score = 43.6 bits (98), Expect = 6e-05 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ LD ++ ++ + F+ FG I+S K+ KG GFV F A +++EK+N Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 360 Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344 G ++ + V + GR K+ + G + Sbjct: 361 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 60.1 bits (139), Expect = 7e-10 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 ++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++ Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259 Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398 ++NG+ + + + +G PRK +++ G E + T ++V +D Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319 Query: 399 EMLKDMFEKYGRITSHK 449 E LK F ++G I S K Sbjct: 320 EDLKQPFSEFGEIVSVK 336 Score = 48.0 bits (109), Expect = 3e-06 Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 5/127 (3%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 +++ +L +D + F++ I+S KV +++ G+S+GYGFV FE+ + A+K ++ Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164 Query: 255 KVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428 + NG + N + + + EK L E +++V + D SD +L + F EKY Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223 Query: 429 GRITSHK 449 + + K Sbjct: 224 PSVKAAK 230 Score = 44.8 bits (101), Expect = 3e-05 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ LD ++ ++ + FS FG I+S K+ KG GFV F A +++EK+N Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 362 Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344 G ++ + V + GR K+ + G + Sbjct: 363 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 391 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 59.7 bits (138), Expect = 9e-10 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Frame = +3 Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188 G S+ G + SLR +F+ L D+ ++ F++FG + V D ET Sbjct: 14 GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72 Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 G S+G+GFV F E++AN +I++++G LNG+++ V Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 59.7 bits (138), Expect = 9e-10 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Frame = +3 Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188 G S+ G + SLR +F+ L D+ ++ F++FG + V D ET Sbjct: 14 GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72 Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 G S+G+GFV F E++AN +I++++G LNG+++ V Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108 >At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 153 Score = 59.3 bits (137), Expect = 1e-09 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +FI L D+ ++ D F+ FG+++ KV D ETG S+G+GFV+F E AA +I ++ Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 261 NGMLLNGKKVYV 296 +G LNG+ + V Sbjct: 97 DGKELNGRHIRV 108 >At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 158 Score = 59.3 bits (137), Expect = 1e-09 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +FI L D+ ++ D F+ FG+++ KV D ETG S+G+GFV+F E AA +I ++ Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 261 NGMLLNGKKVYV 296 +G LNG+ + V Sbjct: 97 DGKELNGRHIRV 108 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 59.3 bits (137), Expect = 1e-09 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+FI N+ + ++ + F +FG +LS KV D+ TG SK +GFV ++++ AA +I+ Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409 Query: 258 VNGMLLNGKKVYV 296 +NG L GKK+ V Sbjct: 410 MNGRHLGGKKLKV 422 Score = 41.1 bits (92), Expect = 3e-04 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ L K + + FS +G I ++ + SKG F+ +ET+E A ++E +N Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167 Query: 264 G 266 G Sbjct: 168 G 168 >At2g37510.1 68415.m04600 RNA-binding protein, putative similar to SP|P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein {Zea mays}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 142 Score = 57.6 bits (133), Expect = 4e-09 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + N+ + D F++FG ++ +V D ++G SKG+GFV + T E A K+ ++ Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95 Query: 261 NGMLLNGKKVYVGRFIPRKER 323 N L+G ++V PR+ R Sbjct: 96 NAKFLDGWVIFVDPARPREPR 116 >At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial (RPS19) Length = 212 Score = 57.2 bits (132), Expect = 5e-09 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 ++I L D ++ D FS+F + +V ++ TG S+GYGFV+F +E++AN +I + Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92 Query: 261 NGMLLNGKKVYV 296 NG LNG + V Sbjct: 93 NGQELNGFNISV 104 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 57.2 bits (132), Expect = 5e-09 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L D++A+ F+ +G+++ K+ D ETG S+G+GFV F+ E+A +IE +N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 264 GMLLNGKKVYV 296 G L+G+ + V Sbjct: 71 GQDLDGRSITV 81 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 57.2 bits (132), Expect = 5e-09 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L D++A+ F+ +G+++ K+ D ETG S+G+GFV F+ E+A +IE +N Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 264 GMLLNGKKVYV 296 G L+G+ + V Sbjct: 71 GQDLDGRSITV 81 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 56.4 bits (130), Expect = 8e-09 Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+F+ +L + + A++D+FSAF + +V D+ TG S+G+GFV F ++ A +I + Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208 Query: 258 VNGMLLNGKKV 290 +NG ++ +++ Sbjct: 209 MNGKWVSSRQI 219 Score = 41.1 bits (92), Expect = 3e-04 Identities = 28/116 (24%), Positives = 56/116 (48%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +V+ N+ + + + F++ G I SCK+ + + + YGFVH+ A+ +I + Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428 NG + G+ + V +RE + + F N++V + + +D L D F + Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAF 171 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 56.0 bits (129), Expect = 1e-08 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Frame = +3 Query: 51 DPSLRKSGVGNVFIKNLD-KTIDN--KAMYDTFSAFGNILSCKVAQ---DETGASKGYGF 212 DP + +S V NV KNL KT D K + G ILS + + +E S GYGF Sbjct: 562 DPDVTESNVLNV--KNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 619 Query: 213 VHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK--ELGEKAKLFTNVYVKNFGE 386 V F++ E A + G +L+G + + RF K +K + K K T ++VKN Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALIL-RFCENKRSDKVGKDSNKDKPCTKLHVKNIAF 678 Query: 387 DFSDEMLKDMFEKYGRITS 443 + + L+ +F +G+I S Sbjct: 679 EATKRELRQLFSPFGQIKS 697 Score = 44.4 bits (100), Expect = 4e-05 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 G +F++NL T + + + FS FG I + D ET S+G ++ + E A +++E Sbjct: 261 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 320 Query: 255 KVNGMLLNGKKVYVGRFIPRKERE 326 +++ G+ +++ +P K RE Sbjct: 321 ELDNSSFQGRLLHI---LPAKHRE 341 Score = 34.3 bits (75), Expect = 0.039 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAA 239 +KN+ + + FS FG I S ++ + G GY FV F T++ A Sbjct: 673 VKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEA 722 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 56.0 bits (129), Expect = 1e-08 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Frame = +3 Query: 12 GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185 G S R + S SG GN +++ NL +D+ A+ + F+ G ++ +V D + Sbjct: 226 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 285 Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323 +G SKG+GFV + + K+I +NG L+G+++ V R R Sbjct: 286 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331 Score = 46.4 bits (105), Expect = 9e-06 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV T + ++ Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329 NG G+ + V P +RE+ Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 56.0 bits (129), Expect = 1e-08 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Frame = +3 Query: 12 GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185 G S R + S SG GN +++ NL +D+ A+ + F+ G ++ +V D + Sbjct: 234 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 293 Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323 +G SKG+GFV + + K+I +NG L+G+++ V R R Sbjct: 294 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339 Score = 46.4 bits (105), Expect = 9e-06 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV T + ++ Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329 NG G+ + V P +RE+ Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 55.6 bits (128), Expect = 1e-08 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = +3 Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224 R+ S S + ++F+K ++ + FS FG + + K+ A + T S GYG+V F Sbjct: 67 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126 Query: 225 TEEAANKSIEKVNGMLLNGKKVYV 296 ++E A ++E +NG +G+ + V Sbjct: 127 SKEDAQSAVEAMNGKFFDGRFILV 150 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 55.6 bits (128), Expect = 1e-08 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 264 GMLLNGKKVYV 296 G L+G+ + V Sbjct: 69 GKELDGRVITV 79 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 55.6 bits (128), Expect = 1e-08 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 264 GMLLNGKKVYV 296 G L+G+ + V Sbjct: 69 GKELDGRVITV 79 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 55.6 bits (128), Expect = 1e-08 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 264 GMLLNGKKVYV 296 G L+G+ + V Sbjct: 69 GKELDGRVITV 79 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 55.2 bits (127), Expect = 2e-08 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N++I L +++ + + FS+FG I+ KV +D TG SKGYGFV + + AN +++ Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540 Query: 258 VNGMLLNGKKVYV 296 +NG G+ + V Sbjct: 541 MNGYRFEGRTLAV 553 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 55.2 bits (127), Expect = 2e-08 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N++I L +++ + + FS+FG I+ KV +D TG SKGYGFV + + AN +++ Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540 Query: 258 VNGMLLNGKKVYV 296 +NG G+ + V Sbjct: 541 MNGYRFEGRTLAV 553 >At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non-consensus TA donor splice site at exon 6 Length = 379 Score = 55.2 bits (127), Expect = 2e-08 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Frame = +3 Query: 111 IDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKK 287 ID+ + D S FG++ C V +D TG S+G+G+V F + E A +++ G G + Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK---GEHFLGNR 70 Query: 288 VYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440 + + KE E+ + AK T ++V S+ + FE+YG IT Sbjct: 71 ILEVKVATPKE---EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 55.2 bits (127), Expect = 2e-08 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 8/141 (5%) Frame = +3 Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFET 227 DPS V+I N+ +T+ N+ + G + +V D+ +G S+ +GF ++ Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126 Query: 228 EEAANKSIEKVNGMLLNGKKVYVG---RFIPRKEREKELGEKAKLFTN----VYVKNFGE 386 E AN +EK+NG + G+++ V + I L + F + VYV N + Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186 Query: 387 DFSDEMLKDMFEKYGRITSHK 449 + EML+++F + G++ S K Sbjct: 187 TVTKEMLENLFSEKGKVVSAK 207 Score = 54.0 bits (124), Expect = 4e-08 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ-DETGASKGYGFVHFETEEAANKSIEKV 260 V++ NL KT+ + + + FS G ++S KV++ T S G+GFV F +EE +I + Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238 Query: 261 NGMLLNGKKVYVGR 302 N LL G+K+ V + Sbjct: 239 NNSLLEGQKIRVNK 252 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 55.2 bits (127), Expect = 2e-08 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVN 263 FI L T ++ + D F +G+++ KV D+ +G S+G+GF+ F+ ++A +++I +N Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69 Query: 264 GMLLNGKKVYVGRFIPRK 317 GM L+G+ + V + P + Sbjct: 70 GMDLDGRTITVDKAQPHQ 87 >At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing protein Mei2-like protein - Arabidopsis thaliana, EMBL:D86122 Length = 907 Score = 54.8 bits (126), Expect = 3e-08 Identities = 35/118 (29%), Positives = 60/118 (50%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F++N+D +I++ + F FG++ + A G ++G+ V + AA K+ ++ Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSYYDIRAAQKAARALH 268 Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 G LL G+K+ + IP KE KE + L+ N N S+E L +F YG I Sbjct: 269 GRLLRGRKLDIRYSIP-KENPKENSSEGALWVN----NLDSSISNEELHGIFSSYGEI 321 >At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 310 Score = 54.8 bits (126), Expect = 3e-08 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 ++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++ Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257 Query: 255 KVNGMLLNGKKVYVGRFIPRK 317 ++NG+ + + + +G PRK Sbjct: 258 EMNGVKCSSRAMRIGPATPRK 278 Score = 47.2 bits (107), Expect = 5e-06 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254 +++ +L +D + +F++ I+S KV +++ G S+GYGFV FE+ + A+K + Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162 Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428 + NG + N + + + EK L E +++V + D SD +L + F EKY Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221 Query: 429 GRITSHK 449 + + K Sbjct: 222 PSVKAAK 228 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 54.4 bits (125), Expect = 3e-08 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Frame = +3 Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEE 233 ++R +FI + ++D ++ + F+ +G ++ +V D ETG S+G+GFV F + E Sbjct: 33 AIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSE 92 Query: 234 AANKSIEKVNGMLLNGKKVYV 296 AA+ +I+ ++G L+G+ V V Sbjct: 93 AASSAIQALDGRDLHGRVVKV 113 >At2g21690.1 68415.m02580 RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 117 Score = 54.4 bits (125), Expect = 3e-08 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F++ LD+ D K + D FS FGN++ K+ D +TG S+ +GFV FE E++ +I ++ Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69 Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAK 350 K V VG R++ A+ Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSAE 98 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 54.0 bits (124), Expect = 4e-08 Identities = 23/85 (27%), Positives = 53/85 (62%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +++I NLD + + ++ FS FG ++ +A+D G S+G+ F+ FE+ ++A +++ + Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77 Query: 261 NGMLLNGKKVYVGRFIPRKEREKEL 335 +G L+ G+K+ + P+ E +++ Sbjct: 78 DGRLI-GQKILCVQRTPKVEDGRDI 101 Score = 29.1 bits (62), Expect = 1.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 354 FTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 FT++Y+ N S+EML MF +G++ Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKV 43 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 54.0 bits (124), Expect = 4e-08 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = +3 Query: 69 SGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242 +G GN V++ NL +D+ A+ FS G ++ +V D ++G SKG+GFV +++ + Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259 Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREK 329 +I+ ++G L+G+++ V R R + Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEARPPRRQ 288 Score = 46.0 bits (104), Expect = 1e-05 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV + + ++ Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 261 NGMLLNGKKVYVGRFIPRKERE 326 NG L+G+ + V P +RE Sbjct: 153 NGYELDGRPLRVNAGPPPPKRE 174 >At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI:1009363; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 156 Score = 53.6 bits (123), Expect = 6e-08 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+F+ L K ++ + F+ FG + KV D +G SKG+GFV + T E + K I Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116 Query: 258 VNGMLLNGKKVYVGRFIPRKERE 326 ++G L+G ++ PR++ + Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQ 139 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 53.6 bits (123), Expect = 6e-08 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 15/162 (9%) Frame = +3 Query: 9 PGCRNSARGMWSQRDPSLRKSGVG---NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVA 176 P + R W+Q R+ G VF+ +L + + + +TF A + ++ KV Sbjct: 147 PSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV 206 Query: 177 QDET-GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK----------ER 323 D T G SKGYGFV F E +++ ++NG + + + G +K Sbjct: 207 NDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT 266 Query: 324 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449 + GE T ++V + +++ LK +F ++G + K Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVK 308 Score = 41.5 bits (93), Expect = 3e-04 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251 + +++I +L +D + + F G + KV ++ + G S+GYGF+ F A +++ Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138 Query: 252 EKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422 + NG + + ++ + + E+ E + V+V + D +D ML + F+ Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE--HTVFVGDLAPDVTDHMLTETFK 194 Score = 33.9 bits (74), Expect = 0.051 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ +D+++ + F FG ++ K+ A K GFV + A +++ +N Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIP-----AGKRCGFVQYANRACAEQALSVLN 334 Query: 264 GMLLNGKKV 290 G L G+ + Sbjct: 335 GTQLGGQSI 343 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 53.6 bits (123), Expect = 6e-08 Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+F+ +L + + +Y +FS F + +V D+ TG S+G+GFV F ++ A +I + Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204 Query: 258 VNGMLLNGKKV 290 +NG L+ +++ Sbjct: 205 MNGKWLSSRQI 215 Score = 38.3 bits (85), Expect = 0.002 Identities = 28/125 (22%), Positives = 57/125 (45%) Frame = +3 Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233 P S +V++ N+ + + + F++ G + S K+ + + + YGFVH+ Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS---YGFVHYFDRR 107 Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413 +A +I +NG L G+ + V +RE + + F N++V + + +D L Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDATLYQ 162 Query: 414 MFEKY 428 F + Sbjct: 163 SFSVF 167 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 53.2 bits (122), Expect = 8e-08 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +3 Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVH 218 S PS +++ L + DTF FGN++ + D+ KG+ F+ Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124 Query: 219 FETEEAANKSIEKVNGMLLNGKKVYV 296 +ETEE A K+I+ ++G L+G+ ++V Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFV 150 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 52.8 bits (121), Expect = 1e-07 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + ++ + FS FG+IL C++ + +TG S+G+GF+ F A ++SI ++ Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68 Query: 261 NGMLLNGKKVYVGRFIPRKERE 326 +G + + V R P+ R+ Sbjct: 69 HGRDFGDRVISVNRAEPKLGRD 90 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 52.4 bits (120), Expect = 1e-07 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260 +FI L K + F FG ++ K+ D+ SKGY F+ + TEEAA +++++ Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343 Query: 261 NGMLLNGKKVYV 296 NG ++NG + V Sbjct: 344 NGKIINGWMIVV 355 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 52.4 bits (120), Expect = 1e-07 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFS-AFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 +VF+ +L + + +++TFS + ++ S KV D TG SKGYGFV F E ++++ Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262 Query: 255 KVNGMLLNGKKVYVGRFIPRK 317 ++NG + +++ VG P++ Sbjct: 263 EMNGAYCSNRQMRVGIATPKR 283 Score = 44.8 bits (101), Expect = 3e-05 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251 V +++ +L +D ++ FS G + S KV +++ T S+GYGFV F + AA + + Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166 Query: 252 EKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EK 425 + +G ++ N + + + EK E +V+V + D +D +L + F ++ Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP-DLSVFVGDLSPDVTDVLLHETFSDR 225 Query: 426 YGRITSHK 449 Y + S K Sbjct: 226 YPSVKSAK 233 Score = 44.0 bits (99), Expect = 5e-05 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Frame = +3 Query: 21 NSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200 N + G SQ D +S +F+ +D + ++ + FS FG ++S K+ K Sbjct: 305 NGSMGYGSQSDG---ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGK 356 Query: 201 GYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344 G GFV F ++A +IE +NG ++ N ++ GR P K+ + G++ Sbjct: 357 GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR-SPNKQWRGDSGQQ 405 >At3g46020.1 68416.m04979 RNA-binding protein, putative similar to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis}; SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 102 Score = 52.0 bits (119), Expect = 2e-07 Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++++ FS FG I ++ +D ET KG+GF+ F++E+ A K+++ + Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68 Query: 261 NGMLLNGKKVYV 296 +G +++G+ ++V Sbjct: 69 DGKIVDGRLIFV 80 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 51.6 bits (118), Expect = 2e-07 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 6/128 (4%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGA 194 R RG S D +K +F+ + ++D+ + F FG + ++ +D TG Sbjct: 115 RTIPRGSMSSNDFKTKK-----IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGR 169 Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER-----EKELGEKAKLFT 359 S+G+GFV +E+E+ + + K N + L+G +V + + P+K K G+ F Sbjct: 170 SRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFG 229 Query: 360 NVYVKNFG 383 Y +G Sbjct: 230 GGYGDGYG 237 Score = 49.2 bits (112), Expect = 1e-06 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 G +F+ L + + F +G I + +D +TG +G+GFV + +K I+ Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101 Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434 + ++ GK+V + R IPR + K+F V D+ K+ F ++G Sbjct: 102 --DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF----VGGIPSSVDDDEFKEFFMQFGE 155 Query: 435 ITSHK 449 + H+ Sbjct: 156 LKEHQ 160 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 51.6 bits (118), Expect = 2e-07 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 V++ NL T + + + FS +GN++ V +D T S+G+GFV + + A ++ + Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64 Query: 261 NGMLLNGKKVYVGRF 305 +G LNG++V V F Sbjct: 65 DGKELNGRRVSVKLF 79 Score = 28.7 bits (61), Expect = 1.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 357 TNVYVKNFGEDFSDEMLKDMFEKYGRI 437 T VYV N +D+ML++ F YG + Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNV 29 >At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 126 Score = 51.2 bits (117), Expect = 3e-07 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +3 Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224 R+ S S + ++F+K ++ + FS FG + + K+ A + T S GYG+V F Sbjct: 48 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107 Query: 225 TEEAANKSIEKVNG 266 ++E A ++E +NG Sbjct: 108 SKEDAQSAVEAMNG 121 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 51.2 bits (117), Expect = 3e-07 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILS----CKVAQDE-TGASKGYGFVHFETEEAANK 245 N+F+ +L + + A++D+FSAF + S +V D+ TG S+G+GFV F ++ A Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208 Query: 246 SIEKVNGMLLNGKKV 290 +I ++NG ++ +++ Sbjct: 209 AINEMNGKWVSSRQI 223 Score = 43.2 bits (97), Expect = 8e-05 Identities = 29/122 (23%), Positives = 59/122 (48%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +V+ N+ + + + F++ G I SCK+ + + + YGFVH+ A+ +I + Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440 NG + G+ + V +RE + + F N++V + + +D L D F + + Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAFNSCS 175 Query: 441 SH 446 S+ Sbjct: 176 SY 177 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 50.8 bits (116), Expect = 4e-07 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 264 G 266 G Sbjct: 69 G 69 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 50.0 bits (114), Expect = 7e-07 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 13/131 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTF-SAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEK 257 +F+ +L + + + DTF + +G++ KV D T G SKGYGFV F E +++ + Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215 Query: 258 VNGMLLNGKKVYVG-----RFIP------RKEREKELGEKAKLFTNVYVKNFGEDFSDEM 404 +NG + + + +G +P + + G+ T ++V + +D+ Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275 Query: 405 LKDMFEKYGRI 437 LK +F ++G + Sbjct: 276 LKSIFGQFGEL 286 Score = 49.2 bits (112), Expect = 1e-06 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Frame = +3 Query: 33 GMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYG 209 G+ SQ S S V +++I +L + +D + F+ G S KV +++ TG S+GYG Sbjct: 47 GIGSQNPGSA--SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104 Query: 210 FVHFETEEAANKSIEKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 386 F+ F + A + ++ NG + + ++ + + EK + T ++V + Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT-IFVGDLAP 163 Query: 387 DFSDEMLKDMFEK-YGRITSHK 449 + +D ML D F+ YG + K Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAK 185 Score = 34.3 bits (75), Expect = 0.039 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ LD + + + F FG +L K+ K GFV + + +A ++ +N Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLN 316 Query: 264 GMLLNGKKV 290 G L G+ + Sbjct: 317 GTQLGGQSI 325 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 50.0 bits (114), Expect = 7e-07 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +3 Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAA 239 R+ +FI L + + + FS G ++ ++ D SKG+GFV F + + A Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88 Query: 240 NKSIEKVNGMLLNGKKVYV 296 K++ + NG LNG+ ++V Sbjct: 89 QKALMEFNGQQLNGRTIFV 107 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 50.0 bits (114), Expect = 7e-07 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F+ L D +++ F+ FG + K+ D ETG SKG+ FV F+ E++ +I+++N Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106 Query: 264 GMLLNGKKV 290 G L+G+ + Sbjct: 107 GQELDGRNI 115 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 50.0 bits (114), Expect = 7e-07 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 +F+ +L + + + +TF A + ++ KV D TG +KGYGFV F E +++ + Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216 Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404 +NG+ + + + +G +K +R+ A + T+ V+V +D+ Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276 Query: 405 LKDMFEKYGRITSHK 449 LK++F +YG I K Sbjct: 277 LKNVFSQYGEIVHVK 291 Score = 44.8 bits (101), Expect = 3e-05 Identities = 35/138 (25%), Positives = 64/138 (46%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197 ++SA G+ + DP+ VF+ LD ++ + + + FS +G I+ K+ A Sbjct: 246 QSSAAGVTTDNDPNNT-----TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP-----AG 295 Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 377 K GFV F + A +++ +NG+ L G V + R K+ G+ ++ + Y + Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLS--WGRSPSNKQSGDPSQFYYGGYGQG 353 Query: 378 FGEDFSDEMLKDMFEKYG 431 E + M +D YG Sbjct: 354 -QEQYGYTMPQDPNAYYG 370 Score = 41.1 bits (92), Expect = 3e-04 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251 + ++I +L +D +Y F+ G ++S KV ++ +TG +GYGF+ F + AA + + Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120 Query: 252 EKVN 263 + N Sbjct: 121 QTFN 124 >At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 306 Score = 50.0 bits (114), Expect = 7e-07 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 +F+ +L + + + +TF A + ++ KV D TG +KGYGFV F E +++ + Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216 Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404 +NG+ + + + +G +K +R+ A + T+ V+V +D+ Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276 Query: 405 LKDMFEKYGRITSHK 449 LK++F +YG I K Sbjct: 277 LKNVFSQYGEIVHVK 291 Score = 41.1 bits (92), Expect = 3e-04 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251 + ++I +L +D +Y F+ G ++S KV ++ +TG +GYGF+ F + AA + + Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120 Query: 252 EKVN 263 + N Sbjct: 121 QTFN 124 >At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing protein low similarity to heterogeneous nuclear ribonucleoprotein G [Mus musculus] GI:5579009; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 152 Score = 49.6 bits (113), Expect = 1e-06 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKV 260 + ++NL + + FSAFG I K+ +DE SKGY F+ F +++ A +IE + Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101 Query: 261 NGMLLNGKKVYVGRFIPRK 317 + + NG+ +Y+ P K Sbjct: 102 DRRMYNGRMIYIDIAKPGK 120 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 48.8 bits (111), Expect = 2e-06 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254 ++F+ +L + + + +TF + ++ KV D TG SKGYGFV F E N+++ Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176 Query: 255 KVNGMLLNGKKVYVGRFIPRK 317 ++NG+ + + + + P+K Sbjct: 177 EMNGLYCSTRPMRISAATPKK 197 Score = 45.2 bits (102), Expect = 2e-05 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251 V ++I +L +D + FS G ++S KV +++ TG +GYGF+ F + AA +++ Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82 Query: 252 EKVNGMLLNGKKV 290 + NG + G ++ Sbjct: 83 QTYNGTQMPGTEL 95 Score = 44.4 bits (100), Expect = 4e-05 Identities = 18/71 (25%), Positives = 41/71 (57%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 + + NLD+ + + + FS G ++ K+ A+KGYG+V F+T +A ++++++ Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQ 293 Query: 264 GMLLNGKKVYV 296 G ++ + V + Sbjct: 294 GQVIGQQAVRI 304 >At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 173 Score = 48.8 bits (111), Expect = 2e-06 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Frame = +3 Query: 69 SGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239 SG N V+I N+D+ + ++ +YD G ++ + +D ET KG+ F +ETEE A Sbjct: 2 SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIA 61 Query: 240 NKSIEKVNGML 272 + +++ +G++ Sbjct: 62 DYAVKLFSGLV 72 >At3g08000.1 68416.m00977 RNA-binding protein, putative similar to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 143 Score = 48.8 bits (111), Expect = 2e-06 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +FI L ++D +++ D FS+FG + ++A D+ +G S+G+GFV F E A + + + Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102 Query: 261 NGMLLNGKKVYVGRFIPR 314 +G L G+ + + + R Sbjct: 103 DGKGLLGRPLRISFALER 120 >At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris] Length = 289 Score = 48.8 bits (111), Expect = 2e-06 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Frame = +3 Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHF-ETE 230 S+R +F+ + + D + + FS +G ++ K+ D ETG S+G+ FV F TE Sbjct: 27 SIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTE 86 Query: 231 EAANKSIEKVNGMLLNGKKVYV 296 EA+N +++G L+G+++ V Sbjct: 87 EASNAM--QLDGQDLHGRRIRV 106 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 48.8 bits (111), Expect = 2e-06 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 ++F+ +L + + + +TF+ + ++ KV D TG SKGYGFV F E ++++ Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273 Query: 255 KVNGMLLNGKKVYVGRFIPRK 317 ++NG + +++ VG P++ Sbjct: 274 EMNGAFCSSRQMRVGIATPKR 294 Score = 44.4 bits (100), Expect = 4e-05 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%) Frame = +3 Query: 42 SQRDPSLRKSG--VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGF 212 SQ+ P G V +++ +L +D ++ FS + S KV ++ +T S+GYGF Sbjct: 105 SQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGF 164 Query: 213 VHFETEEAANKSIEKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 V F + AA ++++ +G+ + N ++ + + EK E +++V + D Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGP-DLSIFVGDLAPD 223 Query: 390 FSDEMLKDMFEKYGRITSHK 449 SD +L + F GR S K Sbjct: 224 VSDAVLLETFA--GRYPSVK 241 Score = 42.3 bits (95), Expect = 1e-04 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Frame = +3 Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245 +S +F+ LD + + + FS FG ++S K+ KG GFV F ++A + Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCGFVQFANRQSAEE 377 Query: 246 SIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344 +I +NG ++ N ++ GR P K+ + G + Sbjct: 378 AIGNLNGTVIGKNTVRLSWGR-SPNKQWRSDSGNQ 411 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 48.0 bits (109), Expect = 3e-06 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = +3 Query: 6 PPGCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE 185 PP R A D R +V + NL + + + F FG + C VA D+ Sbjct: 151 PPSMREGADRKAGGSDMRSRHDE-NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQ 209 Query: 186 -TGASKGYGFVHFETEEAANKSIEKVNG 266 T S+G+GFV F + E A ++I K+NG Sbjct: 210 KTSMSRGFGFVSFVSREDAQRAINKLNG 237 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 48.0 bits (109), Expect = 3e-06 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 VFI L + + + + D G I ++ +D ++G SKGY FV F+T++ A K+IE++ Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177 Query: 261 NGMLLNGKKV 290 + GK + Sbjct: 178 HSKEFKGKTI 187 Score = 38.7 bits (86), Expect = 0.002 Identities = 21/97 (21%), Positives = 45/97 (46%) Frame = +3 Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221 S + S + V +++KN+ + + + + F G + V G + +GFVH+ Sbjct: 280 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHY 338 Query: 222 ETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332 +A K+++ +NG+ + V P+ ER+ + Sbjct: 339 AERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHD 375 >At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 48.0 bits (109), Expect = 3e-06 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 VF+ L +AMYD F +G+IL + D+ T SKGYGFV F+ +AA ++ E Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED- 77 Query: 261 NGMLLNGKK 287 + ++NG++ Sbjct: 78 STPIINGRR 86 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 48.0 bits (109), Expect = 3e-06 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAA 239 R++ +V + NL + + + F FG + VA D+ TG S+G+GFV+F + E A Sbjct: 208 RRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDA 267 Query: 240 NKSIEKVNG 266 ++I K+NG Sbjct: 268 QRAINKLNG 276 >At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. Length = 258 Score = 48.0 bits (109), Expect = 3e-06 Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ NL T+ ++++ F G+++ +V D +TG S+GYGFV + ++ ++E + Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238 Query: 261 NGMLLNGKKVYV 296 +G L G+ + V Sbjct: 239 DGFELEGRAIRV 250 Score = 32.3 bits (70), Expect = 0.16 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 ++ NL +D+ + F N +V + +TG S+G+ FV E N I+ + Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 +G G+ + V K ++ L + + ++V N + E L F + G + Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETE--HKLFVGNLSWTVTSESLAGAFRECGDV 203 >At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein from {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum sativum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 155 Score = 48.0 bits (109), Expect = 3e-06 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + D + + + F +FG I+ V D E+G S+G+GFV +++ E AN +++ + Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97 Query: 261 NGMLLNGKKVYV 296 L+G+ + V Sbjct: 98 QNKELDGRIIGV 109 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 47.6 bits (108), Expect = 4e-06 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +++ NLD ++ N ++ FS FG + V +D T S+G FV + + E A K+ + Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118 Query: 261 NGMLLNGKKVYV 296 + +LNG+K+ V Sbjct: 119 DAKILNGRKLTV 130 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 47.2 bits (107), Expect = 5e-06 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Frame = +3 Query: 51 DPSLRKSGVGN----VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFV 215 DPS VG+ +F+ L + + S +G I + ++ + TGAS+GYGFV Sbjct: 51 DPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 110 Query: 216 HFETEEAANKSIEKVNGMLLNGKKVYV 296 +ETE+ ++ E + L++G+++ V Sbjct: 111 EYETEKEMLRAYEDAHHSLIDGREIIV 137 >At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 382 Score = 47.2 bits (107), Expect = 5e-06 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +3 Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239 R S N+F++ L ++ + F +G I C V D +TG +KG+GFV F+T + A Sbjct: 158 RDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217 Query: 240 NKSIEKVNGMLLN 278 +++ + N Sbjct: 218 RAALKNPEKRMYN 230 Score = 30.3 bits (65), Expect = 0.63 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRIT 440 N++V+ G D + E LK FE YG IT Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEIT 190 >At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, putative Length = 506 Score = 47.2 bits (107), Expect = 5e-06 Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L+ +++ ++ FS FG ++S V +D +TG S Y F+ FE +E+ ++ K+ Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304 Query: 261 NGMLLNGKKVYV 296 + L++ ++++V Sbjct: 305 DNALIDDRRIHV 316 >At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type Length = 613 Score = 46.8 bits (106), Expect = 7e-06 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257 N+F++ + + F ++G I C V D +TG KGYGFV F+T + A +++++ Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468 Query: 258 VNGMLLN 278 + N Sbjct: 469 PEKRMYN 475 Score = 32.3 bits (70), Expect = 0.16 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437 N++V+ FG D + E LK FE YG I Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEI 434 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 46.8 bits (106), Expect = 7e-06 Identities = 32/125 (25%), Positives = 58/125 (46%) Frame = +3 Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233 P S +V++ N+ + + + F+ G + SCK+ + E + YGFVH+ Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS---YGFVHYFDRR 102 Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413 +A +I +NG L G+ + V +RE + + F N++V + + +D ML Sbjct: 103 SAGLAILSLNGRHLFGQPIKVNWAYASGQRE----DTSSHF-NIFVGDLSPEVTDAMLFT 157 Query: 414 MFEKY 428 F Y Sbjct: 158 CFSVY 162 Score = 46.8 bits (106), Expect = 7e-06 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 N+F+ +L + + ++ FS + +V D+ TG S+G+GFV F ++ A +I++ Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199 Query: 258 VNGMLLNGKKV 290 + G L +++ Sbjct: 200 ITGKWLGSRQI 210 >At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris] Length = 293 Score = 46.4 bits (105), Expect = 9e-06 Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 11/145 (7%) Frame = +3 Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVH 218 S+ +P ++K +++ N+ ++ D + D F FG ++S +V+++ +TG S+G G+V Sbjct: 97 SKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155 Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFI---PRKEREKEL----GEKAKLFTN---VY 368 + +A +I ++G + G+++ V + P R E+ +K ++ + VY Sbjct: 156 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215 Query: 369 VKNFGEDFSDEMLKDMFEKYGRITS 443 V N + L++ F K+G I S Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVS 240 >At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 45.6 bits (103), Expect = 2e-05 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Frame = +3 Query: 84 VFIKNL-DKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 + +KNL K + + + D FS G I K+ + G S+ + ++ F TE+ A +I V Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVK 374 N ++ ++ V P E + E + F+N Y K Sbjct: 64 NKCFIDTYRISVEVADPPPREEGK--ENTEHFSNAYAK 99 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 45.6 bits (103), Expect = 2e-05 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSA--FGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257 +++ NL + + + F+A F + + V D G S GYGFV F T E A +I K Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255 Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350 +NG + G+ + + +F R E E G+ + Sbjct: 256 LNGKEIMGRPITL-KFSLRSASESEDGDSVE 285 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 45.6 bits (103), Expect = 2e-05 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +3 Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSI 251 G +++ NL + + F +FG++ +V +DETG KG+GFV F E A ++ Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342 Query: 252 EKVNGML-LNGKKVYVGRFIPRKE 320 +NG L + G+ + V + E Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTE 365 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + + + TF +G I C++ +TG +G+GF+ F A+ +I+ + Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73 Query: 261 NGMLLNGKKVYVGRFIPR 314 +G L K + V + P+ Sbjct: 74 HGRELGNKVISVNKAEPK 91 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 45.6 bits (103), Expect = 2e-05 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + + + TF +G I C++ +TG +G+GF+ F A+ +I+ + Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73 Query: 261 NGMLLNGKKVYVGRFIPR 314 +G L K + V + P+ Sbjct: 74 HGRELGNKVISVNKAEPK 91 >At1g45100.1 68414.m05170 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis sativus] GI:7528270; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 497 Score = 45.6 bits (103), Expect = 2e-05 Identities = 26/118 (22%), Positives = 51/118 (43%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 V + NL + F+ ++S ++ + G GYGFV F + ANK++E+ N Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219 Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 G L+ K+ + + E+A + ++V N + + + F+ G + Sbjct: 220 GEYLHNHKI----LLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEV 273 >At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing protein Length = 809 Score = 44.8 bits (101), Expect = 3e-05 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = +3 Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239 RK +F+ +LDK + + F G + ++ ++ +T SKG F+ F T E A Sbjct: 209 RKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQA 268 Query: 240 NKSIEKVNGMLLNGKK 287 ++++++ ++NGKK Sbjct: 269 KRAVKELKSPMINGKK 284 Score = 31.5 bits (68), Expect = 0.27 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSI 251 V +FI L + + + + D +G + ++A++ A K +GFV F+T EAA Sbjct: 390 VKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCA 449 Query: 252 EKVN 263 + +N Sbjct: 450 KFIN 453 >At1g53650.1 68414.m06105 RNA-binding protein, putative similar to RNA-binding protein GB:AAA86641 GI:1174153 from [Arabidopsis thaliana] Length = 314 Score = 44.8 bits (101), Expect = 3e-05 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197 R R +QR+ S+R++ V++ ++D+++ + + FS+ G ++ C++ D Sbjct: 112 RLPGRASKAQREDSIRRT----VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVL 167 Query: 198 KGYGFVHFETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKA 347 + + FV F ++ A ++ M+ L K + F+PR E E+E+ + Sbjct: 168 R-FAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT 226 Query: 348 KLFTNVYVKNFGED 389 TNV KN ED Sbjct: 227 IYCTNV-DKNATED 239 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 44.4 bits (100), Expect = 4e-05 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254 G +++ NL TI + + F G ++ ++ D+ T S+G+GFV + E A ++++ Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175 Query: 255 KVNGMLLNGKKVYVG-RFIPR-KERE---KELGEKAKLFTN----VYVKNFGEDFSDEML 407 N + G+ V V +PR E E ++ + + + + VY N G + + + L Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235 Query: 408 KDMF 419 KD F Sbjct: 236 KDAF 239 Score = 44.4 bits (100), Expect = 4e-05 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 V+ NL + ++ + D F +L KV + TG S+G+GF+ FE+ E ++ + Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280 Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329 NG+ + G+ + R EREK Sbjct: 281 NGVEVEGRAL---RLNLASEREK 300 >At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing protein similar to GB:L02953 from [Xenopus laevis] (Nucleic Acids Res. 21, 999-1006 (1993)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 369 Score = 44.0 bits (99), Expect = 5e-05 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ + + F +G+I+ ++ D TG S+G+GFV F+TE++ ++ Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218 Query: 261 NGMLLNGKKVYVGRFIPRK 317 L K+V + R P++ Sbjct: 219 KVHELGDKQVEIKRAEPKR 237 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 43.6 bits (98), Expect = 6e-05 Identities = 15/42 (35%), Positives = 30/42 (71%) Frame = +3 Query: 171 VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 + +T KG+GF+ FE+E+ A K+++ +NG ++NG+ ++V Sbjct: 98 IKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 43.6 bits (98), Expect = 6e-05 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + + F +G I C V D+ TG +KG+GFV F+T + A +++++ Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165 Query: 261 NGMLLN 278 +LN Sbjct: 166 KKRILN 171 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 43.6 bits (98), Expect = 6e-05 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + + F +G I C V D+ TG +KG+GFV F+T + A +++++ Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165 Query: 261 NGMLLN 278 +LN Sbjct: 166 KKRILN 171 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 43.2 bits (97), Expect = 8e-05 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 V++ + + + FS +G I+ + +D+ TG SKG+ F+ +E + + +++ + Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97 Query: 261 NGMLLNGKKVYVGRFIPRKEREKE 332 NG L+ G+ + V K+ E+E Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEE 121 >At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI:1546894; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 43.2 bits (97), Expect = 8e-05 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-T 188 R +A W DP+L + + +F +L +++ + F+ F KV +D+ T Sbjct: 117 RKAAGQSWE--DPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 174 Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362 G +KGYGFV F +++++NG + + + + + ++ ++E E+ K +N Sbjct: 175 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSN 232 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 43.2 bits (97), Expect = 8e-05 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L M F FG I+ V D+ TG SKGYGFV F+ EAA ++ + + Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83 Query: 261 NGML 272 N ++ Sbjct: 84 NPVI 87 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 43.2 bits (97), Expect = 8e-05 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251 +F+ L ++ D F +G I CK D+ +G SKGYGF+ F++ A ++ Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189 Query: 252 -EKVNGMLLNGKKVYVG--RFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422 +K+ + + +G + P + + + +YV N D + L + F Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPE-NVQRKIYVSNVSADIDPQKLLEFFS 248 Query: 423 KYGRI 437 ++G I Sbjct: 249 RFGEI 253 >At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 169 Score = 42.7 bits (96), Expect = 1e-04 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +++ L T + + + F FG I+ V D ET S+GYGFV F+ E+A ++ + Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74 Query: 261 N----GMLLNGKKVYVG 299 N G + N K +VG Sbjct: 75 NPTIEGRITNCKLAFVG 91 >At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 358 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94 Query: 261 NGMLLNGKKVYVGRFIPR 314 LNGK V V +P+ Sbjct: 95 FHE-LNGKMVEVKLAVPK 111 >At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167 Query: 261 NGMLLNGKKVYVGRFIPR 314 LNGK V V +P+ Sbjct: 168 FHE-LNGKMVEVKLAVPK 184 >At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167 Query: 261 NGMLLNGKKVYVGRFIPR 314 LNGK V V +P+ Sbjct: 168 FHE-LNGKMVEVKLAVPK 184 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 41.9 bits (94), Expect = 2e-04 Identities = 19/61 (31%), Positives = 36/61 (59%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ +L+K K + + F FG++ + +DE S+G GFV + ++E A +I+ +N Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Query: 264 G 266 G Sbjct: 273 G 273 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 41.9 bits (94), Expect = 2e-04 Identities = 19/61 (31%), Positives = 36/61 (59%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ +L+K K + + F FG++ + +DE S+G GFV + ++E A +I+ +N Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Query: 264 G 266 G Sbjct: 273 G 273 >At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam profiles PF01743: polyA polymerase family protein, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 881 Score = 41.9 bits (94), Expect = 2e-04 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = +3 Query: 132 DTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299 D F+ G ++S ++ GYGFV F + AN ++EK NG L+ K+++G Sbjct: 700 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLG 755 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++ Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78 Query: 261 NGMLLNGKK 287 N +++G+K Sbjct: 79 N-PVIDGRK 86 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++ Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78 Query: 261 NGMLLNGKK 287 N +++G+K Sbjct: 79 N-PVIDGRK 86 >At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 41.9 bits (94), Expect = 2e-04 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++ Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78 Query: 261 NGMLLNGKK 287 N +++G+K Sbjct: 79 N-PVIDGRK 86 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 41.1 bits (92), Expect = 3e-04 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ L K + + FS +G I ++ + SKG F+ +ET+E A ++E +N Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167 Query: 264 G 266 G Sbjct: 168 G 168 Score = 36.3 bits (80), Expect = 0.010 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFE 224 N+FI N+ + ++ + F +FG +LS KV D+ TG SK +G + F+ Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397 >At3g14450.1 68416.m01831 RNA-binding protein, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies) Length = 327 Score = 41.1 bits (92), Expect = 3e-04 Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Frame = +3 Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221 +QR+ S+R++ V++ ++D+++ + + FS G ++ C++ D + + FV F Sbjct: 133 AQREDSIRRT----VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEF 187 Query: 222 ETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKAKLFTNVYV 371 ++ A++++ ML L K + F+PR E E+E+ + +Y Sbjct: 188 ADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTR-----TIYC 242 Query: 372 KNFGEDFSDEMLKDMFEK-YGRIT 440 N + S +++ FE G +T Sbjct: 243 TNIDKKVSQADVRNFFESACGEVT 266 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 41.1 bits (92), Expect = 3e-04 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ F FG V D T +G+GF+ +++EEA K + K Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169 Query: 261 NGMLLNGKKVYVGRFIPRK 317 LNGK V V R +P++ Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 41.1 bits (92), Expect = 3e-04 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L ++ F FG V D T +G+GF+ +++EEA K + K Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169 Query: 261 NGMLLNGKKVYVGRFIPRK 317 LNGK V V R +P++ Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 41.1 bits (92), Expect = 3e-04 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++++ L+K + + FS +G I +A D+ +GY FV F +E A +I+ +N Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268 Query: 264 GM--LLNGKKVYVGRFI-PRKEREKELGEKAKLF 356 G+ + + + RF P+K R LGE+ F Sbjct: 269 GLFTIRGSDQPLIVRFADPKKPR---LGEQRSTF 299 >At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 285 Score = 41.1 bits (92), Expect = 3e-04 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248 VF+ L ++ + F +G IL V D+ TG SKGYGFV F EAA ++ Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81 >At1g32790.1 68414.m04042 RNA-binding protein, putative similar to RNA-binding protein GB:CAB40027 GI:4539439 from [Arabidopsis thaliana] Length = 358 Score = 41.1 bits (92), Expect = 3e-04 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197 R +AR +QR+ +R++ V++ +LD+ + + + F + G ++ C++ D Sbjct: 157 RMNARTSMAQREDVIRRT----VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVL 212 Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344 + + F+ F EE A ++ ++G +L V V F+PR E E+E+ + Sbjct: 213 R-FAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCAR 270 Query: 345 AKLFTNV 365 TN+ Sbjct: 271 TIYCTNI 277 >At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch domain-containing protein / RNA recognition motif (RRM)-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF01585: G-patch domain, weak hit to PF00641: Zn-finger in Ran binding protein and others Length = 1105 Score = 40.7 bits (91), Expect = 4e-04 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Frame = +3 Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNG 266 ++ LD+ D + + FS I ++ +D+ T S+G+ FVHF + E A K++E N Sbjct: 462 VRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNR 521 Query: 267 MLL--NGK 284 L NGK Sbjct: 522 TALERNGK 529 >At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386 Length = 274 Score = 40.7 bits (91), Expect = 4e-04 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248 VF+ L ++ + F +G+IL V D+ TG SKGYGFV F EAA ++ Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81 >At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 100 Score = 40.3 bits (90), Expect = 6e-04 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK- 257 +++ L + + F FG I+ KV D T SKG+GFV F E+A ++ E Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70 Query: 258 ---VNGMLLNGKKVYVG 299 ++G +N K Y+G Sbjct: 71 NHTIDGRTVNCKLAYLG 87 >At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 40.3 bits (90), Expect = 6e-04 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251 +F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++ Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201 Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407 +K+ L + V+ G I T +YV N G + + L Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261 Query: 408 KDMFEKYGRI 437 F K+G I Sbjct: 262 LMFFSKFGEI 271 >At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 40.3 bits (90), Expect = 6e-04 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251 +F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++ Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201 Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407 +K+ L + V+ G I T +YV N G + + L Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261 Query: 408 KDMFEKYGRI 437 F K+G I Sbjct: 262 LMFFSKFGEI 271 >At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 40.3 bits (90), Expect = 6e-04 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251 +F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++ Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201 Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407 +K+ L + V+ G I T +YV N G + + L Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261 Query: 408 KDMFEKYGRI 437 F K+G I Sbjct: 262 LMFFSKFGEI 271 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 39.9 bits (89), Expect = 8e-04 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++I NLD + N+ + + FS G++ + D +G SKG V F A ++++ N Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYN 169 Query: 264 GMLLNGK 284 + L+GK Sbjct: 170 NVQLDGK 176 >At1g71800.1 68414.m08298 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB:AAD47839 GI:5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 461 Score = 39.9 bits (89), Expect = 8e-04 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 VF+ N+ + + + G ++S ++ D ETG KGYGF ++ EE A + + Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70 Query: 261 NGMLLNGKKVYV 296 +NG+++ V Sbjct: 71 QSYEINGRQLRV 82 >At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 347 Score = 39.9 bits (89), Expect = 8e-04 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248 VF+ L + M F FG IL V D+ +G SKGYGFV F EAA + Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70 >At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 242 Score = 39.9 bits (89), Expect = 8e-04 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248 VF+ L + M F FG IL V D+ +G SKGYGFV F EAA + Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70 >At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 249 Score = 39.9 bits (89), Expect = 8e-04 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248 VF+ L + M F FG IL V D+ +G SKGYGFV F EAA + Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70 >At4g10610.1 68417.m01735 RNA-binding protein, putative Length = 336 Score = 39.5 bits (88), Expect = 0.001 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197 R + R +QR+ +R++ V++ ++D+ + + + F FG ++ C++ D Sbjct: 134 RMNPRTSLAQREEIIRRT----VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVL 189 Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344 + + F+ F T+E ++ ++G +L V V F+PR E E+E+ + Sbjct: 190 R-FAFIEF-TDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCAR 247 Query: 345 AKLFTNV 365 TN+ Sbjct: 248 TIYCTNI 254 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 38.7 bits (86), Expect = 0.002 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCK-VAQDETGASKGYGFVHFETEEAANKSIEKV 260 +FI+NL + + + F+ FG + S V T +G FV F+T +A+ +I Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622 Query: 261 N-----GMLLNGKKVYVGRFIPRKERE----KELGEKAKLFTNVYVKNFGEDFSD 398 + G+LL G+++ V R + +K + K+ EK N+Y+ G+ D Sbjct: 623 DTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNLYLAKEGQILDD 677 Score = 37.5 bits (83), Expect = 0.004 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 + I+NL + FSA G + + ++ ETG KG+ FV F ++ A +I+K Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392 Query: 261 NGMLLNGKKVYVGRFIPR 314 NG + + + V +P+ Sbjct: 393 NGHMFGKRPIAVDWAVPK 410 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 38.7 bits (86), Expect = 0.002 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKV 260 +++ L ++ ++ F FG+I K D+ + +GFV F E A+ +++ + Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338 +G L G+ + V +P K + E G Sbjct: 75 DGAELYGRVLTVNYALPEKIKGGEQG 100 >At2g24590.1 68415.m02936 splicing factor, putative similar to to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352 Length = 196 Score = 38.3 bits (85), Expect = 0.002 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254 + V++ NLD + + + D F +FG I S VA+ GY F+ FE A +I Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVAR----RPPGYAFLDFEDSRDARDAIR 56 Query: 255 KVNGMLLNGKKV 290 +V+G NG +V Sbjct: 57 EVDGK--NGWRV 66 >At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 244 Score = 38.3 bits (85), Expect = 0.002 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248 VF+ L ++ + F FG+I+ V D++ G SKGYGFV F EAA K+ Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64 >At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 38.3 bits (85), Expect = 0.002 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248 VF+ L ++ + F FG+I+ V D++ G SKGYGFV F EAA K+ Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 38.3 bits (85), Expect = 0.002 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +3 Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266 + +L + ++ + + F FG ++ ++A D +G+G+V F+ A K+ ++G Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161 Query: 267 MLLNGKKVYVGRFIPRKER 323 ++GK V +P +++ Sbjct: 162 AQIDGKVVKATFTLPPRQK 180 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 38.3 bits (85), Expect = 0.002 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +3 Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266 + +L + ++ + + F FG ++ ++A D +G+G+V F+ A K+ ++G Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161 Query: 267 MLLNGKKVYVGRFIPRKER 323 ++GK V +P +++ Sbjct: 162 AQIDGKVVKATFTLPPRQK 180 >At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196 Length = 353 Score = 37.9 bits (84), Expect = 0.003 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%) Frame = +3 Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197 R + R +Q+D +R++ V++ ++D+ + + + F G ++ C+V D Sbjct: 153 RMNKRTSLAQKDDVIRRT----VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVL 208 Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLN--GKKVYVGR---------FIPRKEREKELGEK 344 + + F+ F EE A ++ ++G +L KV + F+PR E E+E+ + Sbjct: 209 R-FAFIEFTNEEGARAALS-MSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVR 266 Query: 345 AKLFTNV 365 TN+ Sbjct: 267 TVYCTNI 273 >At1g60200.1 68414.m06781 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF01480: PWI domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 899 Score = 37.9 bits (84), Expect = 0.003 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +3 Query: 108 TIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKVNGMLLNGK 284 T++N M G++ SC A+D T KG+GF FE+ E ++I + ++G+ Sbjct: 213 TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQ 272 Query: 285 KVYV 296 ++ V Sbjct: 273 ELLV 276 >At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing protein similar to SP|P52298 20 kDa nuclear cap binding protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 124 Score = 37.5 bits (83), Expect = 0.004 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++++NL I ++ MYD F +G I ++ D+ A+KG FV +E A +++ ++ Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK--ATKGTAFVVYEDIYDAKNAVDHLS 78 Query: 264 G 266 G Sbjct: 79 G 79 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 37.1 bits (82), Expect = 0.005 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 147 Query: 264 GMLLNGKKVYV 296 + L+GK + + Sbjct: 148 DVQLDGKPMKI 158 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 37.1 bits (82), Expect = 0.005 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 83 Query: 264 GMLLNGKKVYV 296 + L+GK + + Sbjct: 84 DVQLDGKPMKI 94 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 37.1 bits (82), Expect = 0.005 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 ++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 149 Query: 264 GMLLNGKKVYV 296 + L+GK + + Sbjct: 150 DVQLDGKPMKI 160 >At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 222 Score = 37.1 bits (82), Expect = 0.005 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +3 Query: 138 FSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLL 275 FS FG + +VA+++ TG SK +GF+ FE E A + +N LL Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLL 126 >At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 129 Score = 37.1 bits (82), Expect = 0.005 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 ++++ L + + + D F+ G + + D T S+G+GF+ ++ AN+ I Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105 Query: 258 VNGMLLNGKKVYVGRFI 308 ++ +L G+ + V +F+ Sbjct: 106 LDHSVLQGRVITVEKFL 122 >At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like SR protein (SRZ22) identical to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like SR protein [Arabidopsis thaliana] GI:3435094; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc knuckle; identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093 Length = 200 Score = 36.7 bits (81), Expect = 0.007 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = +3 Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254 + V++ NLD + + + D F AFG + S VA+ GY F+ FE A +I Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVAR----RPPGYAFLDFEDPRDARDAIR 56 Query: 255 KVNGMLLNGKKV 290 ++G NG +V Sbjct: 57 ALDGK--NGWRV 66 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 36.7 bits (81), Expect = 0.007 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIE 254 N+F+ NL K + + F A GN++S +V E S GYGFV F+T++ A ++ Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249 Query: 255 KVNGMLLNGKKVYVGR 302 + G G+ + + + Sbjct: 250 EFQGKDFLGRPIRLAK 265 >At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 36.7 bits (81), Expect = 0.007 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = +3 Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230 +PS + G + + NLD +I N ++ F A G I + ET + + FV F Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299 Query: 231 EAANKSIEKVNGMLLNGKKVYV 296 A +++ +N + GK++ V Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321 >At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 36.7 bits (81), Expect = 0.007 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = +3 Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230 +PS + G + + NLD +I N ++ F A G I + ET + + FV F Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299 Query: 231 EAANKSIEKVNGMLLNGKKVYV 296 A +++ +N + GK++ V Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321 >At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit GB:CAA77136 from [Nicotiana plumbaginifolia] Length = 589 Score = 35.9 bits (79), Expect = 0.013 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Frame = +3 Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248 G +F+ L + + +FG + + +D ETG SKGY F ++ + + Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432 Query: 249 IEKVNGMLLNGKKVYVGRFI-----PRKEREKEL 335 +NG+ + K + V R I P+ E+E+ L Sbjct: 433 CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVL 466 >At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 382 Score = 35.9 bits (79), Expect = 0.013 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257 ++++ L + + + D F+ G + + D T S+G+GF+ ++ AN+ I Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135 Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT 359 ++ +L G+ + V + R+ R G+ L T Sbjct: 136 LDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRT 169 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 35.5 bits (78), Expect = 0.017 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +VF+ N+D + + F G + + D+ G KG+ +V F EA ++++ + Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-L 151 Query: 261 NGMLLNGKKVYV 296 N L+G+++ V Sbjct: 152 NESELHGRQLKV 163 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 35.5 bits (78), Expect = 0.017 Identities = 16/71 (22%), Positives = 34/71 (47%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 +F+ NL + F ++ ++ + G G GFV F + A K+++K+N Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550 Query: 264 GMLLNGKKVYV 296 G L +++++ Sbjct: 551 GENLRSREIFL 561 >At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing protein Length = 830 Score = 35.5 bits (78), Expect = 0.017 Identities = 24/112 (21%), Positives = 48/112 (42%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 + +PS + G + I N+D T+ N + F A+G I + ET + + F+ + Sbjct: 259 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 314 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380 A +++ +N + GK + + P R + +++ V NF Sbjct: 315 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 366 >At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing protein Length = 843 Score = 35.5 bits (78), Expect = 0.017 Identities = 24/112 (21%), Positives = 48/112 (42%) Frame = +3 Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224 + +PS + G + I N+D T+ N + F A+G I + ET + + F+ + Sbjct: 272 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 327 Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380 A +++ +N + GK + + P R + +++ V NF Sbjct: 328 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 379 >At1g67770.1 68414.m07733 RNA-binding protein, putative similar to terminal ear1 gb|AAC39463.1 Length = 527 Score = 35.5 bits (78), Expect = 0.017 Identities = 18/73 (24%), Positives = 36/73 (49%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257 G++ I NL+ T+ + + F +G + + ET + FV F A K++ Sbjct: 183 GSLVIMNLEPTVSSSTLRHIFQVYGEVKQVR----ETPCKREQRFVEFFDVRDAAKALRV 238 Query: 258 VNGMLLNGKKVYV 296 +NG +++GK + + Sbjct: 239 MNGKVISGKPMVI 251 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 35.1 bits (77), Expect = 0.022 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260 +++ NL + + F AFG + ++ D ETG KG+GF+ F E + K Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHS-----KA 321 Query: 261 NGMLLNGKKVYVGRFI 308 + LNGK GR I Sbjct: 322 AQIALNGKLEIAGRTI 337 Score = 33.9 bits (74), Expect = 0.051 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 5/123 (4%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260 VF + + +Y+ FS G + ++ D SKG G++ F + +I + Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228 Query: 261 NGMLLNGKKVYVGRFIPRKEREKE----LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428 +G L G+ V V K + +G +YV N + S+ L+ +FE + Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAF 288 Query: 429 GRI 437 G + Sbjct: 289 GPV 291 >At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 35.1 bits (77), Expect = 0.022 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221 +FI+ L + + FS++G++ V D+ TG SKGYGFV F Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123 >At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 35.1 bits (77), Expect = 0.022 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221 +FI+ L + + FS++G++ V D+ TG SKGYGFV F Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123 >At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122 Length = 915 Score = 34.7 bits (76), Expect = 0.029 Identities = 23/104 (22%), Positives = 46/104 (44%) Frame = +3 Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG 191 G + R S+ +PS + + G + + NLD +I N+ + ++G + + T Sbjct: 280 GTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIR----RTM 335 Query: 192 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323 ++ F AA ++ +NG+ + GKK+ + P R Sbjct: 336 HDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTR 379 >At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat Length = 952 Score = 34.7 bits (76), Expect = 0.029 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +3 Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG---NILSCKVAQDETGASKGYGFVH 218 R+P G +F+ NL I + F FG N++ K E + G+GF+ Sbjct: 155 RNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIK-GHHEVEKNAGFGFII 213 Query: 219 FETEEAANKSIEKVNGMLLNGK 284 + E++A K++E +G+ +G+ Sbjct: 214 YAAEKSAMKAVE-FDGVEFHGR 234 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 34.3 bits (75), Expect = 0.039 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +3 Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248 G +F+ L + + +FG + + +D ETG SKGY F ++ + + Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416 Query: 249 IEKVNGMLLNGKKVYVGR 302 +NG+ + K + V R Sbjct: 417 CAALNGIKMGDKTLTVRR 434 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 34.3 bits (75), Expect = 0.039 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +3 Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248 G +F+ L + + +FG + + +D ETG SKGY F ++ + + Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416 Query: 249 IEKVNGMLLNGKKVYVGR 302 +NG+ + K + V R Sbjct: 417 CAALNGIKMGDKTLTVRR 434 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 34.3 bits (75), Expect = 0.039 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +3 Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248 G +F+ L + + +FG + + +D ETG SKGY F ++ + + Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416 Query: 249 IEKVNGMLLNGKKVYVGR 302 +NG+ + K + V R Sbjct: 417 CAALNGIKMGDKTLTVRR 434 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 34.3 bits (75), Expect = 0.039 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 VF+ N + + F +G + D GY FV+FE E A +I K++ Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKSGYAFVYFEDERDAEDAIRKLD 56 Query: 264 GMLLNGKKVYVGRFIPRKEREKELGE-KA----KLFTNVYVKNFGEDFSDEM-LKDMFEK 425 +K + + ER + G+ KA K ++V NF + E ++ FE Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEP 116 Query: 426 YGRITS 443 YG++T+ Sbjct: 117 YGKVTN 122 >At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing protein Length = 573 Score = 34.3 bits (75), Expect = 0.039 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 +F+ L + + S +G + K + +G SKGY V F AA E + Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263 Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338 NG + NGK V P E K++G Sbjct: 264 NGFIFNGKACVVAFASP--ETLKQMG 287 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 33.9 bits (74), Expect = 0.051 Identities = 17/72 (23%), Positives = 36/72 (50%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 ++++ N+D + + F + G + + D+ G KG+ +V F EA S+ + Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-IL 162 Query: 261 NGMLLNGKKVYV 296 N L+G+++ V Sbjct: 163 NESELHGRQIKV 174 >At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar to U2 small nuclear ribonucleoprotein auxiliary factor 35 kD subunit related protein 1 (sp|Q15695) Length = 757 Score = 33.9 bits (74), Expect = 0.051 Identities = 15/55 (27%), Positives = 32/55 (58%) Frame = +3 Query: 126 MYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290 ++ F +G +++ KV ++ + KG +VH+ + E+A + + +NG GK+V Sbjct: 311 VHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQV 365 >At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing protein heterogeneous nuclear ribonucleoprotein R, Homo sapiens, PIR:T02673; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 471 Score = 33.5 bits (73), Expect = 0.067 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 144 AFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290 + G + ++ ++ ++G KGY FV F +++ A ++I+ +N GK++ Sbjct: 114 SIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163 Score = 30.3 bits (65), Expect = 0.63 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Frame = +3 Query: 189 GASKGYGFVHFETEEAANKSIEKVNG--MLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362 G ++G+ F+ + A S +K++ L+ V R + A Sbjct: 212 GRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGD--SSASQVKA 269 Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437 +Y+KN D + E LK +FE +G+I Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKI 294 >At3g26120.1 68416.m03257 RNA-binding protein, putative similar to GB:AAC39463 from [Zea mays], PF00076 RNA recognition motif (2 copies) Length = 615 Score = 33.5 bits (73), Expect = 0.067 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +3 Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257 G + I NLD + + + F +G I + ET K FV F A ++ ++ Sbjct: 213 GTLVIFNLDPEVSSITLRQIFQVYGPIKELR----ETPYKKHQRFVEFYDVRDAARAFDR 268 Query: 258 VNGMLLNGKKVYV 296 +NG + GK+V + Sbjct: 269 MNGKEIGGKQVVI 281 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 33.5 bits (73), Expect = 0.067 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260 + + + + + + + F FG I + + D +G KGY + +E +E A +I + Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156 Query: 261 NGMLLNGKKVYV 296 NG L + V V Sbjct: 157 NGAELLTQNVSV 168 >At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 420 Score = 33.1 bits (72), Expect = 0.089 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%) Frame = +3 Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203 P +R + V ++NL + N+ + + F G+I S + + E G K Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244 Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353 + FV +ET EAA K+ +N NG +V + G+F R+ +E+ ++ Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304 Query: 354 FTNVYVKNFGE 386 V+ + GE Sbjct: 305 TGRVHDQTGGE 315 >At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 422 Score = 33.1 bits (72), Expect = 0.089 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%) Frame = +3 Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203 P +R + V ++NL + N+ + + F G+I S + + E G K Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244 Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353 + FV +ET EAA K+ +N NG +V + G+F R+ +E+ ++ Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304 Query: 354 FTNVYVKNFGE 386 V+ + GE Sbjct: 305 TGRVHDQTGGE 315 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 33.1 bits (72), Expect = 0.089 Identities = 17/72 (23%), Positives = 37/72 (51%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +V++ N+D + + F G + + D+ G KG+ +V F EA ++++ + Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148 Query: 261 NGMLLNGKKVYV 296 N L+G+++ V Sbjct: 149 NESELHGRQLKV 160 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 33.1 bits (72), Expect = 0.089 Identities = 17/72 (23%), Positives = 37/72 (51%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +V++ N+D + + F G + + D+ G KG+ +V F EA ++++ + Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148 Query: 261 NGMLLNGKKVYV 296 N L+G+++ V Sbjct: 149 NESELHGRQLKV 160 >At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 272 Score = 32.7 bits (71), Expect = 0.12 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Frame = +3 Query: 75 VGNVFIKNLD--KTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF----ETEE 233 V +F+ NL T D+ Y F FG ++ V + G SKGYGF+ F T Sbjct: 11 VTKIFVGNLTWRTTADDLRRY--FEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68 Query: 234 AANKSIEKVNGMLLNGKKVYVGRF 305 A S ++G N G F Sbjct: 69 ALQNSKPIIDGRTTNCNLASAGSF 92 >At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 32.7 bits (71), Expect = 0.12 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 V++ NLD + + + D F AFG + + VA+ GY F+ F+ E A +I ++ Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59 >At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643 Length = 187 Score = 32.7 bits (71), Expect = 0.12 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263 V++ NLD + + + D F AFG + + VA+ GY F+ F+ E A +I ++ Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59 >At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 391 Score = 32.3 bits (70), Expect = 0.16 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248 +V+++NL I + + F FG I + + +D G Y FV FE + + Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 315 Query: 249 IEKVNGMLLNGKKVYV 296 I K + + L G++VY+ Sbjct: 316 I-KASPIYLGGRQVYI 330 >At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 450 Score = 32.3 bits (70), Expect = 0.16 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248 +V+++NL I + + F FG I + + +D G Y FV FE + + Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 374 Query: 249 IEKVNGMLLNGKKVYV 296 I K + + L G++VY+ Sbjct: 375 I-KASPIYLGGRQVYI 389 >At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 501 Score = 31.1 bits (67), Expect = 0.36 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Frame = +3 Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN----ILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248 VF+ NL + ++ +Y F+ N I + +V +D KG +V F+T EAAN Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLV 344 Query: 249 IEKVNGMLLNGKKVYVGRFIP 311 ++K + L +++ + R P Sbjct: 345 LKK-GYLKLRERELRISRVKP 364 >At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 259 Score = 31.1 bits (67), Expect = 0.36 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3 Query: 123 AMYDTFSAFGNILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299 A+++ FS+ G + V TGAS GY F+ + E K + +NG L G+K+ V Sbjct: 136 ALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMKNE---TKGL-TLNGSHLGGRKIDVM 191 Query: 300 RFIPRKE 320 I R+E Sbjct: 192 FAIDREE 198 >At5g49530.1 68418.m06130 SIN-like family protein low similarity to Sex-lethal interactor [Drosophila melanogaster] GI:6049274; contains Pfam profile PF04801: Sin-like protein conserved region Length = 689 Score = 30.3 bits (65), Expect = 0.63 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +3 Query: 306 IPRKER-EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437 +P KER +K L E + L +K++ +FSDE ++YGR+ Sbjct: 338 LPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRL 382 >At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); similar to ras-GTPase-activating protein (GAP<120>) SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus] Length = 488 Score = 30.3 bits (65), Expect = 0.63 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY--GFVHFETEEAANKSIE 254 ++++K L + + F FG I + + + + KG+ GFV FE+ + +IE Sbjct: 313 SIYLKGLPLDATPALLENEFQKFGLIRTNGI---QVRSQKGFCFGFVEFESASSMQSAIE 369 Query: 255 KVNGMLLNGKKVYV 296 + ++LNG KV V Sbjct: 370 -ASPVMLNGHKVVV 382 >At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 180 Score = 29.9 bits (64), Expect = 0.83 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437 +Y+KN D + E LK +FE +G+I Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKI 60 >At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A) identical to SP|P52901 Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) {Arabidopsis thaliana} Length = 389 Score = 29.9 bits (64), Expect = 0.83 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +3 Query: 315 KEREKELGEKAKLFTNVYVKNFGED 389 K ++ + E ++LFTNVYVK FG + Sbjct: 351 KAKDCPMPEPSELFTNVYVKGFGTE 375 >At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile: PF00076 RNA recognition motif Length = 636 Score = 29.5 bits (63), Expect = 1.1 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263 F +L + K + FS G + V D ETGAS+G+ ++ + +++++ ++ Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI--DLTSGFDEALQ-LS 542 Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKA 347 G + G ++V PR E +A Sbjct: 543 GSEIGGGNIHVEESRPRDSDEGRSSNRA 570 >At2g15500.1 68415.m01774 hypothetical protein Length = 132 Score = 29.5 bits (63), Expect = 1.1 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = +3 Query: 249 IEKVNGMLLNGKKVYVGRFIPRKE 320 + K+ GMLLN K+VYVG F+ K+ Sbjct: 1 MSKLIGMLLNDKQVYVGPFLRGKK 24 >At3g12930.1 68416.m01611 expressed protein contains Pfam domain PF02410: Domain of unknown function DUF143 Length = 238 Score = 29.1 bits (62), Expect = 1.5 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +3 Query: 366 YVKNFGEDFSDEMLKDMFEKYGRI 437 ++ N ED +DEM D+F KYG++ Sbjct: 78 FLSNVSED-TDEMFDDLFNKYGKV 100 >At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Length = 422 Score = 29.1 bits (62), Expect = 1.5 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKG-YGFVHFETEEA 236 ++F+ NL + +Y+TF +FG I + K GFV FE EA Sbjct: 276 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328 >At4g16280.1 68417.m02469 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 505 Score = 28.7 bits (61), Expect = 1.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNG 266 +DE S+G GFV + ++E A +I+ +NG Sbjct: 2 RDEYRQSRGCGFVKYSSKETAMAAIDGLNG 31 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 28.7 bits (61), Expect = 1.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437 ++YV N D + ++D+F KYGRI Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRI 33 >At3g32050.1 68416.m04075 hypothetical protein Length = 175 Score = 28.7 bits (61), Expect = 1.9 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 162 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290 S VA AS Y ++ T+E KS + + GMLL K V Sbjct: 47 SIPVADPTVDASPNYEKMYLATQEKLQKSDQVIEGMLLKFKDV 89 >At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing protein similar to SP|P42731 Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) {Arabidopsis thaliana}; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 423 Score = 28.3 bits (60), Expect = 2.5 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 180 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 + TG G GFV F + + A ++EK G L ++++ Sbjct: 217 NHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFL 255 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 27.5 bits (58), Expect = 4.4 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +3 Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260 +V++ N D + + FS FG + GY FV+FE E A +I + Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRV-------KRVDMKSGYAFVYFEDERDAEDAIRRT 55 Query: 261 N 263 + Sbjct: 56 D 56 >At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 809 Score = 27.5 bits (58), Expect = 4.4 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +3 Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 314 GFV FE E +E ++G +N + + +PR Sbjct: 209 GFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPR 244 >At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) identical to 2-isopropylmalate synthase (IMS2) [Arabidopsis thaliana] GI:12330689 Length = 503 Score = 27.1 bits (57), Expect = 5.9 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 369 VKNFGEDFSDEMLKDMFEKYGRITSHK 449 +K G + SDE D+F +Y +T K Sbjct: 436 LKELGYEISDEKFNDIFSRYRELTKDK 462 >At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, putative similar to diphenol oxidase [Nicotiana tabacum][GI:1685087] Length = 553 Score = 27.1 bits (57), Expect = 5.9 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 334 NSFSRSLRGMNLPTYTFFPFSNIPLTFSIDLL 239 N+F SLR +N TY +N+P+T DLL Sbjct: 324 NTFVNSLRSLNSKTYP----ANVPITVDHDLL 351 >At1g61460.1 68414.m06925 S-locus protein kinase, putative contains similarity to KI domain interacting kinase 1 [Zea mays] gi|2735017|gb|AAB93834; contains S-locus glycoprotein family domain, Pfam:PF00954 Length = 598 Score = 27.1 bits (57), Expect = 5.9 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 87 FIKNLDKTIDNKAMYDT--FSAFGNILSCKVAQDETGASK 200 +I + I N+ DT FSA G ILS ++A+ E G +K Sbjct: 198 YIHGIGCLIWNQDFMDTVQFSAGGEILSIRLARSELGGNK 237 >At1g52560.1 68414.m05933 26.5 kDa class I small heat shock protein-like (HSP26.5-P) contains Pfam profile: PF00011 Hsp20/alpha crystallin family; identified in Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237. Length = 232 Score = 27.1 bits (57), Expect = 5.9 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +3 Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332 +DE +SK YG+ + + +E + L NG + IPR E+ K+ Sbjct: 176 EDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNG---VLNLVIPRTEKPKK 224 >At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing protein Length = 710 Score = 26.6 bits (56), Expect = 7.7 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 147 FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296 +G + K ++ +G SKGY V F AA+ + +NG NG+ V Sbjct: 257 YGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVV 307 >At4g16295.1 68417.m02472 self-incompatibility protein-related similar to self-incompatibility [Papaver nudicaule] GI:3097262 Length = 151 Score = 26.6 bits (56), Expect = 7.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 270 LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389 ++NG FI K +E +LGE F N + NFGE+ Sbjct: 45 VVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGEN 84 >At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein similar to cellulase GI:575404 from [Sambucus nigra]. Length = 486 Score = 26.6 bits (56), Expect = 7.7 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 110 SFVKVFNKNIPNSRLAQRRISLGP 39 SFVK +NKN+PN+ I GP Sbjct: 427 SFVKWYNKNVPNANELTGAILGGP 450 >At1g80960.3 68414.m09501 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 462 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 439 VMRPYFSNISFNISSEKS 386 V+ PY +IS+NIS EKS Sbjct: 312 VLGPYVPHISYNISEEKS 329 >At1g80960.2 68414.m09500 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 486 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 439 VMRPYFSNISFNISSEKS 386 V+ PY +IS+NIS EKS Sbjct: 312 VLGPYVPHISYNISEEKS 329 >At1g80960.1 68414.m09499 F-box protein-related contains weak hit to Pfam PF00646: F-box domain Length = 486 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 439 VMRPYFSNISFNISSEKS 386 V+ PY +IS+NIS EKS Sbjct: 312 VLGPYVPHISYNISEEKS 329 >At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 579 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293 YGF H ET N + E +G+L++ +K + Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347 >At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 580 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293 YGF H ET N + E +G+L++ +K + Sbjct: 319 YGFRHAETSVRINHNSENQSGLLIDWEKEF 348 >At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487 Length = 579 Score = 26.6 bits (56), Expect = 7.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293 YGF H ET N + E +G+L++ +K + Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347 >At1g72580.1 68414.m08393 hypothetical protein Length = 98 Score = 26.6 bits (56), Expect = 7.7 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = +3 Query: 237 ANKSIEKVNGM-----LLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365 +++ +EK N M LLN +G+ +P KE E+EL E F N+ Sbjct: 50 SDEEMEKFNQMMNCVKLLNNCLTKIGQSLPLKEGERELVEVEVDFKNI 97 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,761,996 Number of Sequences: 28952 Number of extensions: 189309 Number of successful extensions: 930 Number of sequences better than 10.0: 208 Number of HSP's better than 10.0 without gapping: 747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 865 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 732537840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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