Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D03
(451 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 180 4e-46
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 173 6e-44
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 170 4e-43
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 157 2e-39
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 139 9e-34
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 135 1e-32
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 118 2e-27
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 100 9e-22
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 70 6e-13
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 66 1e-11
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 64 6e-11
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 64 6e-11
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 62 2e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 62 2e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 60 5e-10
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 60 5e-10
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 60 7e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 60 9e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 60 9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 59 1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 59 1e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 59 1e-09
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 58 4e-09
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 57 5e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 57 5e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 57 5e-09
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 8e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 56 1e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 56 1e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 56 1e-08
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 56 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At5g51300.2 68418.m06360 splicing factor-related contains simila... 55 2e-08
At5g51300.1 68418.m06359 splicing factor-related contains simila... 55 2e-08
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 55 2e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 55 2e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 55 2e-08
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 55 3e-08
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 55 3e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 3e-08
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 54 3e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 54 4e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 54 4e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 54 6e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 54 6e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 54 6e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 53 8e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 1e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 52 1e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 52 2e-07
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 52 2e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 52 2e-07
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 51 3e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 51 3e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 51 4e-07
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 50 7e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 7e-07
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 50 7e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 50 7e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 50 7e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 49 2e-06
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 49 2e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 3e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 48 3e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 48 3e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 48 3e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 48 3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 3e-06
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 48 4e-06
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 47 5e-06
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 47 5e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 47 5e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 47 7e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 47 7e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 9e-06
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 2e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 2e-05
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 46 2e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 45 3e-05
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 45 3e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 4e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 44 6e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 44 6e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 44 6e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 8e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 43 8e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 8e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 43 8e-05
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 2e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 2e-04
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 42 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 2e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 3e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 41 3e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 41 3e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 41 3e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 41 3e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 41 3e-04
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 41 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 41 4e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 41 4e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 6e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 6e-04
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 40 8e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 40 8e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 8e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 40 0.001
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.002
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 39 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 38 0.002
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 38 0.002
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 38 0.002
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 38 0.002
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 38 0.002
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.003
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 38 0.003
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 38 0.004
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 37 0.005
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 37 0.005
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 37 0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.005
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 37 0.007
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 37 0.007
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 37 0.007
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 37 0.007
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.013
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.013
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.017
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.017
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 36 0.017
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 36 0.017
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.017
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.022
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 35 0.022
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 35 0.022
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 35 0.029
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.029
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.039
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.039
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.039
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 34 0.039
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.039
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.051
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 34 0.051
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 33 0.067
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 33 0.067
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.067
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 33 0.089
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 33 0.089
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.089
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.089
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 33 0.12
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.16
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.16
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.36
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 31 0.36
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 30 0.63
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 30 0.63
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 30 0.83
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 30 0.83
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 1.1
At2g15500.1 68415.m01774 hypothetical protein 29 1.1
At3g12930.1 68416.m01611 expressed protein contains Pfam domain ... 29 1.5
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 1.5
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.9
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 1.9
At3g32050.1 68416.m04075 hypothetical protein 29 1.9
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 2.5
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 4.4
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 27 4.4
At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) ide... 27 5.9
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p... 27 5.9
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai... 27 5.9
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 27 5.9
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 7.7
At4g16295.1 68417.m02472 self-incompatibility protein-related si... 27 7.7
At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein sim... 27 7.7
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 27 7.7
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 27 7.7
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 27 7.7
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 27 7.7
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 27 7.7
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 27 7.7
At1g72580.1 68414.m08393 hypothetical protein 27 7.7
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 180 bits (438), Expect = 4e-46
Identities = 88/138 (63%), Positives = 110/138 (79%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R M+S RDPSLRKSGVGN+FIKNLDK+ID+KA+++TFSAFG ILSCKVA D +G SKGYG
Sbjct: 117 RVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYG 176
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FV ++T+EAA +I+K+NGMLLN K+VYVG F+ + +R+ GEK K FTNVYVKN E
Sbjct: 177 FVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS-GEKVK-FTNVYVKNLSES 234
Query: 390 FSDEMLKDMFEKYGRITS 443
SDE L +F ++G TS
Sbjct: 235 LSDEELNKVFGEFGVTTS 252
Score = 99 bits (238), Expect = 7e-22
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 10/145 (6%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
QRDPS K NV++KNL +++ ++ + F FG SC + +D G SKG+GFV+FE
Sbjct: 213 QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF----------TNVYVK 374
+ A ++++ +NG + K+ +VG+ + ERE EL +K + +N+YVK
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332
Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
N E +D+ L++ F +G ITS K
Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCK 357
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/88 (40%), Positives = 56/88 (63%)
Frame = +3
Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245
KS N+++KNLD+++ + + + F+ FG I SCKV +D +G S+G GFV F T E A +
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382
Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREK 329
+I ++NG ++ K +YV RKE K
Sbjct: 383 AITEMNGKMIVTKPLYVA-LAQRKEDRK 409
Score = 65.7 bits (153), Expect = 1e-11
Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242
+ G ++++ +LD T+ + +++ F+ G ++S +V +D T S GYG+V++ T + A+
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
+++ ++N M LNG+ + V + R+ L + N+++KN + + L + F
Sbjct: 101 RALNELNFMALNGRAIRVMYSV----RDPSLRKSG--VGNIFIKNLDKSIDHKALHETFS 154
Query: 423 KYGRITSHK 449
+G I S K
Sbjct: 155 AFGPILSCK 163
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 173 bits (420), Expect = 6e-44
Identities = 83/138 (60%), Positives = 101/138 (73%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R M S RDPS R SG GNVFIKNLD +IDNKA+Y+TFS+FG ILSCKVA D G SKGYG
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 175
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FV FE EE A +I+K+NGMLLN K+V+VG F+ R++R + FTNVYVKN ++
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKE 235
Query: 390 FSDEMLKDMFEKYGRITS 443
+D+ LK F KYG I+S
Sbjct: 236 ITDDELKKTFGKYGDISS 253
Score = 100 bits (239), Expect = 5e-22
Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 10/133 (7%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
NV++KNL K I + + TF +G+I S V +D++G S+ +GFV+F + EAA ++EK+
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK---------AKL-FTNVYVKNFGEDFSDEMLK 410
NG+ L +YVGR + +RE+EL K KL +N+Y+KN + +DE LK
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345
Query: 411 DMFEKYGRITSHK 449
+MF +YG +TS K
Sbjct: 346 EMFSEYGNVTSCK 358
Score = 72.5 bits (170), Expect = 1e-13
Identities = 32/95 (33%), Positives = 60/95 (63%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+++KNLD +++++ + + FS +GN+ SCKV + G S+G+GFV + E A +++++
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
NG ++ K +YV ++ER+ L LFT +
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHL---QSLFTQI 420
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/123 (22%), Positives = 62/123 (50%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
++++ +LD +++ + D F+ + + +V +D T S GY +V+F E A++++E +
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
N + + + + + ++ L K NV++KN ++ L + F +G I
Sbjct: 106 NYAPIRDRPIRI--MLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSSFGTIL 159
Query: 441 SHK 449
S K
Sbjct: 160 SCK 162
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 170 bits (413), Expect = 4e-43
Identities = 80/138 (57%), Positives = 103/138 (74%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R M S RDPS R SG GN+FIKNLD +IDNKA+++TFS+FG ILSCKVA D TG SKGYG
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FV FE EE+A +I+K+NGML+N K+V+VG FI R+ER ++ FTNVYVKN ++
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKE 239
Query: 390 FSDEMLKDMFEKYGRITS 443
++ L+ F K+G I+S
Sbjct: 240 IGEDELRKTFGKFGVISS 257
Score = 103 bits (246), Expect = 7e-23
Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227
RD + NV++KNL K I + TF FG I S V +D++G S+ +GFV+FE
Sbjct: 219 RDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFEC 278
Query: 228 EEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL-----GEKAKLF-----TNVYVKN 377
EAA ++EK+NG+ L +YVGR + ERE+EL E+ F N+Y+KN
Sbjct: 279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKN 338
Query: 378 FGEDFSDEMLKDMFEKYGRITSHK 449
+ DE LK+MF +YG +TS K
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSK 362
Score = 69.7 bits (163), Expect = 8e-13
Identities = 30/97 (30%), Positives = 58/97 (59%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
+R KS N+++KNLD ++D++ + + FS +GN+ S KV + G S+G+GFV +
Sbjct: 321 ERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 335
E A +++ ++NG ++ K +Y+ +++R L
Sbjct: 381 NPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/123 (21%), Positives = 59/123 (47%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+++ +LD + ++D F N++S +V +D+ S GY +++F A +++E +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
N L + + + + ++ L K N+++KN ++ L + F +G I
Sbjct: 110 NYTPLFDRPIRI--MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTIL 163
Query: 441 SHK 449
S K
Sbjct: 164 SCK 166
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 157 bits (382), Expect = 2e-39
Identities = 73/135 (54%), Positives = 100/135 (74%)
Frame = +3
Query: 39 WSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVH 218
+S RD S R+SGVGN+F+KNLDK++DNK +++ FS G I+SCKVA D G S+GYGFV
Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180
Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSD 398
F+TE++A +IEK+NG +LN K+++VG F+ RKE + +K K FTNVYVKN E +D
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFL-RKEERESAADKMK-FTNVYVKNLSEATTD 238
Query: 399 EMLKDMFEKYGRITS 443
+ LK F +YG I+S
Sbjct: 239 DELKTTFGQYGSISS 253
Score = 89.8 bits (213), Expect = 7e-19
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
+R+ + K NV++KNL + + + TF +G+I S V +D G S+ +GFV+FE
Sbjct: 214 ERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFE 273
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT----------NVYVK 374
E A +++E +NG + K+ YVG+ + ERE EL + + + N+YVK
Sbjct: 274 NPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVK 333
Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
N + +DE L+++F ++G ITS K
Sbjct: 334 NLDDTVTDEKLRELFAEFGTITSCK 358
Score = 77.4 bits (182), Expect = 4e-15
Identities = 34/101 (33%), Positives = 59/101 (58%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+++KNLD T+ ++ + + F+ FG I SCKV +D +G SKG GFV F A++ + ++
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383
NG ++ GK +YV ++ER +L + ++ G
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429
Score = 60.1 bits (139), Expect = 7e-10
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
++++ +LD + + +YD F+ ++S +V +D T S GYG+V++ + A K+++K
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
+N LNGK + + + R + G N++VKN + ++ L + F G I
Sbjct: 107 LNYSYLNGKMIRI-TYSSRDSSARRSG-----VGNLFVKNLDKSVDNKTLHEAFSGCGTI 160
Query: 438 TSHK 449
S K
Sbjct: 161 VSCK 164
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 139 bits (336), Expect = 9e-34
Identities = 64/138 (46%), Positives = 97/138 (70%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R MWS R P R++GVGNVF+KNL +++ N + D F FGNI+SCKVA E G S+GYG
Sbjct: 96 RVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYG 155
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FV FE E+AA+ +I+ +N ++ K++YVG+F+ + +R K EK +TN+Y+KN D
Sbjct: 156 FVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP-EEK---YTNLYMKNLDAD 211
Query: 390 FSDEMLKDMFEKYGRITS 443
S+++L++ F ++G+I S
Sbjct: 212 VSEDLLREKFAEFGKIVS 229
Score = 87.4 bits (207), Expect = 4e-18
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+++KNLD + + + F+ FG I+S +A+DE +GY FV+F+ E A ++ E V
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 261 NGMLLNGKKVYVGRFIPRKERE-------KELGEKAKLF---TNVYVKNFGEDFSDEMLK 410
NG K +YVGR + ERE KE E+ K+ +N+YVKN ++E L+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 411 DMFEKYGRITSHK 449
F + G ITS K
Sbjct: 322 KHFSQCGTITSTK 334
Score = 71.3 bits (167), Expect = 3e-13
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257
++++ +L ++ +YD F+ F ++ S ++ +D +G S YG+ +F + + AN +IEK
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 258 VNGMLLNGKKVYVGRFIPRKE-REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434
N LLNGK + V + + R +G NV+VKN E ++ +L+DMF+K+G
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG-------NVFVKNLPESVTNAVLQDMFKKFGN 137
Query: 435 ITSHK 449
I S K
Sbjct: 138 IVSCK 142
Score = 65.3 bits (152), Expect = 2e-11
Identities = 30/87 (34%), Positives = 52/87 (59%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
V N+++KN++ + + + FS G I S K+ DE G SKG+GFV F T E A +++
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKEL 335
+G + +GK +YV +++R+ +L
Sbjct: 363 TFHGQMFHGKPLYVAIAQKKEDRKMQL 389
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 135 bits (327), Expect = 1e-32
Identities = 68/138 (49%), Positives = 95/138 (68%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
R M+S+RDPS R SG GNVF+KNLD++IDNK + D FSAFG +LSCKVA+D +G SKGYG
Sbjct: 15 RIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYG 74
Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
FV F ++ + + NG L+ + ++V F+ R + +K+++FTNVYVKN E
Sbjct: 75 FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ-----WDKSRVFTNVYVKNLVET 129
Query: 390 FSDEMLKDMFEKYGRITS 443
+D LK +F ++G ITS
Sbjct: 130 ATDADLKRLFGEFGEITS 147
Score = 84.2 bits (199), Expect = 4e-17
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 11/134 (8%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
NV++KNL +T + + F FG I S V +D G S+ +GFV+FE EAA +IEK+
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKL-----------FTNVYVKNFGEDFSDEML 407
NG++++ K+++VGR + R ++L K +L N+YVKN + + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 408 KDMFEKYGRITSHK 449
+++F ++G ITS K
Sbjct: 240 EELFSEFGTITSCK 253
Score = 80.6 bits (190), Expect = 4e-16
Identities = 39/83 (46%), Positives = 54/83 (65%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227
RD RK G+ N+++KNLD ++DN + + FS FG I SCKV G SKG GFV F T
Sbjct: 215 RDMKTRK-GM-NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272
Query: 228 EEAANKSIEKVNGMLLNGKKVYV 296
E A+K++ K+NG ++ K +YV
Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYV 295
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
NV+VKN E ++ L DMF +G++ S K
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCK 61
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 118 bits (284), Expect = 2e-27
Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 3/141 (2%)
Frame = +3
Query: 30 RGMWSQRDPSLRK---SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200
R MWSQRD + R+ +G N+++KNLD +I + + F FG+ILSCKV + E G SK
Sbjct: 93 RIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSK 151
Query: 201 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
G+GFV F+TE++A + ++G ++ GKK++V +FI + ER G + TNVYVKN
Sbjct: 152 GFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS--TNVYVKNL 209
Query: 381 GEDFSDEMLKDMFEKYGRITS 443
E +D+ L +F +YG ++S
Sbjct: 210 IETVTDDCLHTLFSQYGTVSS 230
Score = 91.5 bits (217), Expect = 2e-19
Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 9/132 (6%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
NV++KNL +T+ + ++ FS +G + S V +D G S+G+GFV+F E A K++E +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK------AK---LFTNVYVKNFGEDFSDEMLKD 413
G+ L KK++VG+ + + ER + L +K AK ++N+YVKN E ++ L++
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 414 MFEKYGRITSHK 449
+F YG+I S K
Sbjct: 323 IFGCYGQIVSAK 334
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
P++R S N+++KNL ++++ + + F +G I+S KV E G SKG+GFV F E
Sbjct: 299 PNMRWS---NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355
Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKE 320
+ ++ +NG L++GK + V R RKE
Sbjct: 356 ESKQAKRYLNGFLVDGKPIVV-RVAERKE 383
Score = 50.0 bits (114), Expect = 7e-07
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = +3
Query: 69 SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANK 245
S G++++ +L + K + D FS ++S + ++ TG S Y +++F++ +A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL-FTNVYVKNFGEDFSDEMLKDMFE 422
++ ++N L GK + I +R+ + + F N+YVKN + L+ MF
Sbjct: 78 AMTRLNHSDLKGKAMR----IMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 423 KYGRITSHK 449
+G I S K
Sbjct: 134 PFGSILSCK 142
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 99.5 bits (237), Expect = 9e-22
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 10/145 (6%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
+RD + K+ NV++KNL ++ + + + F +G I S V +D G SKG+GFV+FE
Sbjct: 18 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE--------LGEKAKLF--TNVYVK 374
+ A +++E +NG + K+ YVGR + ERE E L E A F +N+YVK
Sbjct: 78 NADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 137
Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
N SDE LK++F +G +TS K
Sbjct: 138 NLDPSISDEKLKEIFSPFGTVTSSK 162
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
N+++KNLD +I ++ + + FS FG + S KV +D G SKG GFV F T E A +++ ++
Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 192
Query: 261 NGMLLNGKKVYVGRFIPRKE 320
+G ++ K +YV RKE
Sbjct: 193 SGKMIESKPLYVA-IAQRKE 211
Score = 63.7 bits (148), Expect = 6e-11
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +3
Query: 267 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS 443
MLLN K+VYVG F+ R+ER+ K K FTNVYVKN E +D+ LK+ F +YG+ITS
Sbjct: 1 MLLNDKQVYVGPFLRRQERDST-ANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITS 57
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 70.1 bits (164), Expect = 6e-13
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILS-CKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
N+FI NLD +D K +YDTFSAFG I S K+ +D +TG S+G+GF+ +++ EA++ +IE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350
+ G L+ +++ V + + + G A+
Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTKGERHGTPAE 204
Score = 55.6 bits (128), Expect = 1e-08
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +3
Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEE 233
S ++ V++ LD + + +++ F G +++ V +D T + YGF+ + +EE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
A+ +I+ +N + L+GK + V + + ++ ++G N+++ N D +++L D
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK-ASQDKKSLDVG------ANLFIGNLDPDVDEKLLYD 130
Query: 414 MFEKYGRITSH 446
F +G I S+
Sbjct: 131 TFSAFGVIASN 141
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 66.1 bits (154), Expect = 1e-11
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNI-LSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+F+ NL +D++A+ F G + +S + +T S+G+GFV T E A K++EK
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
N +NG+++ V R PR R + +YV N D L+ +F ++G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Score = 53.2 bits (122), Expect = 8e-08
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGA 194
R + RG +R P + + +++ NL +D+ + FS G ++ +V D ETG
Sbjct: 188 RAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGR 246
Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
S+G+GFV E N +I ++G L G+ + V
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 63.7 bits (148), Expect = 6e-11
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+FI N+ + +++ + TF FG +LS KV D+ TG SK +GF+ ++++ AA +I
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
+NG L+GKK+ V +++++ K LF +
Sbjct: 400 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 435
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ L K + + FS +G I ++ + SKG F+ +E++E A ++E +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 264 GM-LLNGKKV 290
G ++ G V
Sbjct: 171 GRHIMEGANV 180
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 63.7 bits (148), Expect = 6e-11
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+FI N+ + +++ + TF FG +LS KV D+ TG SK +GF+ ++++ AA +I
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
+NG L+GKK+ V +++++ K LF +
Sbjct: 391 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 426
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ L K + + FS +G I ++ + SKG F+ +E++E A ++E +N
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 161
Query: 264 GM-LLNGKKV 290
G ++ G V
Sbjct: 162 GRHIMEGANV 171
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 62.1 bits (144), Expect = 2e-10
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
G +FI L K N F +G I + +D TG +G+GF+ F +K IE
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431
+ ++NGK+V + R IP+ + + K K ++V +++ LKD F KYG
Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133
Query: 432 RITSHK 449
+ H+
Sbjct: 134 NVVEHQ 139
Score = 50.4 bits (115), Expect = 5e-07
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ + T+ + D F+ +GN++ +V +D ET S+G+GFV F++EE ++ + K
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 261 NGMLLNGKKVYVGRFIPRK 317
N + + +V + + P+K
Sbjct: 171 NMIDMADTQVEIKKAEPKK 189
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 62.1 bits (144), Expect = 2e-10
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
G +FI L K N F +G I + +D TG +G+GF+ F +K IE
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431
+ ++NGK+V + R IP+ + + K K ++V +++ LKD F KYG
Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133
Query: 432 RITSHK 449
+ H+
Sbjct: 134 NVVEHQ 139
Score = 47.6 bits (108), Expect = 4e-06
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ + T+ + D F+ +GN++ +V +D ET S+G+GFV F++EE ++ + K
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 261 N 263
N
Sbjct: 171 N 171
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 60.5 bits (140), Expect = 5e-10
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Frame = +3
Query: 27 ARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKG 203
+ G S+R S +F+ NL ++++A+ F G + +V + ET S+G
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192
Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383
+GFV + + A ++EK N LNG+ + V + PR R + + VYV N
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252
Query: 384 EDFSDEMLKDMFEKYGRI 437
D + L+ +F ++G++
Sbjct: 253 WDVDNGRLEQLFSEHGKV 270
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 30 RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGY 206
RG +R P + + V++ NL +DN + FS G ++ +V D ETG S+G+
Sbjct: 229 RGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287
Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
GFV + N++I ++G L G+ + V
Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 60.5 bits (140), Expect = 5e-10
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398
++NG+ + + + +G PRK +++ G E + T ++V +D
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 399 EMLKDMFEKYGRITSHK 449
E LK F ++G I S K
Sbjct: 318 EDLKQPFNEFGEIVSVK 334
Score = 47.2 bits (107), Expect = 5e-06
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254
+++ +L +D + +F++ I+S KV +++ G S+GYGFV FE+ + A+K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
+ NG + N + + + EK L E +++V + D SD +L + F EKY
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 429 GRITSHK 449
+ + K
Sbjct: 222 PSVKAAK 228
Score = 43.6 bits (98), Expect = 6e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ LD ++ ++ + F+ FG I+S K+ KG GFV F A +++EK+N
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 360
Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344
G ++ + V + GR K+ + G +
Sbjct: 361 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 60.1 bits (139), Expect = 7e-10
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398
++NG+ + + + +G PRK +++ G E + T ++V +D
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 399 EMLKDMFEKYGRITSHK 449
E LK F ++G I S K
Sbjct: 320 EDLKQPFSEFGEIVSVK 336
Score = 48.0 bits (109), Expect = 3e-06
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
+++ +L +D + F++ I+S KV +++ G+S+GYGFV FE+ + A+K ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 255 KVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
+ NG + N + + + EK L E +++V + D SD +L + F EKY
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 429 GRITSHK 449
+ + K
Sbjct: 224 PSVKAAK 230
Score = 44.8 bits (101), Expect = 3e-05
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ LD ++ ++ + FS FG I+S K+ KG GFV F A +++EK+N
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 362
Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344
G ++ + V + GR K+ + G +
Sbjct: 363 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 391
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.7 bits (138), Expect = 9e-10
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188
G S+ G + SLR +F+ L D+ ++ F++FG + V D ET
Sbjct: 14 GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72
Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
G S+G+GFV F E++AN +I++++G LNG+++ V
Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 59.7 bits (138), Expect = 9e-10
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188
G S+ G + SLR +F+ L D+ ++ F++FG + V D ET
Sbjct: 14 GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72
Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
G S+G+GFV F E++AN +I++++G LNG+++ V
Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+FI L D+ ++ D F+ FG+++ KV D ETG S+G+GFV+F E AA +I ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 261 NGMLLNGKKVYV 296
+G LNG+ + V
Sbjct: 97 DGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+FI L D+ ++ D F+ FG+++ KV D ETG S+G+GFV+F E AA +I ++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 261 NGMLLNGKKVYV 296
+G LNG+ + V
Sbjct: 97 DGKELNGRHIRV 108
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+FI N+ + ++ + F +FG +LS KV D+ TG SK +GFV ++++ AA +I+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 258 VNGMLLNGKKVYV 296
+NG L GKK+ V
Sbjct: 410 MNGRHLGGKKLKV 422
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ L K + + FS +G I ++ + SKG F+ +ET+E A ++E +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 264 G 266
G
Sbjct: 168 G 168
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + N+ + D F++FG ++ +V D ++G SKG+GFV + T E A K+ ++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 261 NGMLLNGKKVYVGRFIPRKER 323
N L+G ++V PR+ R
Sbjct: 96 NAKFLDGWVIFVDPARPREPR 116
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 57.2 bits (132), Expect = 5e-09
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
++I L D ++ D FS+F + +V ++ TG S+GYGFV+F +E++AN +I +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 261 NGMLLNGKKVYV 296
NG LNG + V
Sbjct: 93 NGQELNGFNISV 104
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 57.2 bits (132), Expect = 5e-09
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L D++A+ F+ +G+++ K+ D ETG S+G+GFV F+ E+A +IE +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 264 GMLLNGKKVYV 296
G L+G+ + V
Sbjct: 71 GQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 57.2 bits (132), Expect = 5e-09
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L D++A+ F+ +G+++ K+ D ETG S+G+GFV F+ E+A +IE +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 264 GMLLNGKKVYV 296
G L+G+ + V
Sbjct: 71 GQDLDGRSITV 81
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 56.4 bits (130), Expect = 8e-09
Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+F+ +L + + A++D+FSAF + +V D+ TG S+G+GFV F ++ A +I +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 258 VNGMLLNGKKV 290
+NG ++ +++
Sbjct: 209 MNGKWVSSRQI 219
Score = 41.1 bits (92), Expect = 3e-04
Identities = 28/116 (24%), Positives = 56/116 (48%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+V+ N+ + + + F++ G I SCK+ + + + YGFVH+ A+ +I +
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428
NG + G+ + V +RE + + F N++V + + +D L D F +
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAF 171
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 56.0 bits (129), Expect = 1e-08
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Frame = +3
Query: 51 DPSLRKSGVGNVFIKNLD-KTIDN--KAMYDTFSAFGNILSCKVAQ---DETGASKGYGF 212
DP + +S V NV KNL KT D K + G ILS + + +E S GYGF
Sbjct: 562 DPDVTESNVLNV--KNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 619
Query: 213 VHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK--ELGEKAKLFTNVYVKNFGE 386
V F++ E A + G +L+G + + RF K +K + K K T ++VKN
Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALIL-RFCENKRSDKVGKDSNKDKPCTKLHVKNIAF 678
Query: 387 DFSDEMLKDMFEKYGRITS 443
+ + L+ +F +G+I S
Sbjct: 679 EATKRELRQLFSPFGQIKS 697
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
G +F++NL T + + + FS FG I + D ET S+G ++ + E A +++E
Sbjct: 261 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 320
Query: 255 KVNGMLLNGKKVYVGRFIPRKERE 326
+++ G+ +++ +P K RE
Sbjct: 321 ELDNSSFQGRLLHI---LPAKHRE 341
Score = 34.3 bits (75), Expect = 0.039
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAA 239
+KN+ + + FS FG I S ++ + G GY FV F T++ A
Sbjct: 673 VKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEA 722
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 56.0 bits (129), Expect = 1e-08
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +3
Query: 12 GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185
G S R + S SG GN +++ NL +D+ A+ + F+ G ++ +V D +
Sbjct: 226 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 285
Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
+G SKG+GFV + + K+I +NG L+G+++ V R R
Sbjct: 286 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
Score = 46.4 bits (105), Expect = 9e-06
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV T + ++
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
NG G+ + V P +RE+
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 56.0 bits (129), Expect = 1e-08
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +3
Query: 12 GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185
G S R + S SG GN +++ NL +D+ A+ + F+ G ++ +V D +
Sbjct: 234 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 293
Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
+G SKG+GFV + + K+I +NG L+G+++ V R R
Sbjct: 294 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
Score = 46.4 bits (105), Expect = 9e-06
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV T + ++
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
NG G+ + V P +RE+
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 55.6 bits (128), Expect = 1e-08
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224
R+ S S + ++F+K ++ + FS FG + + K+ A + T S GYG+V F
Sbjct: 67 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126
Query: 225 TEEAANKSIEKVNGMLLNGKKVYV 296
++E A ++E +NG +G+ + V
Sbjct: 127 SKEDAQSAVEAMNGKFFDGRFILV 150
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 264 GMLLNGKKVYV 296
G L+G+ + V
Sbjct: 69 GKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 264 GMLLNGKKVYV 296
G L+G+ + V
Sbjct: 69 GKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 55.6 bits (128), Expect = 1e-08
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 264 GMLLNGKKVYV 296
G L+G+ + V
Sbjct: 69 GKELDGRVITV 79
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N++I L +++ + + FS+FG I+ KV +D TG SKGYGFV + + AN +++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 258 VNGMLLNGKKVYV 296
+NG G+ + V
Sbjct: 541 MNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 55.2 bits (127), Expect = 2e-08
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N++I L +++ + + FS+FG I+ KV +D TG SKGYGFV + + AN +++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 258 VNGMLLNGKKVYV 296
+NG G+ + V
Sbjct: 541 MNGYRFEGRTLAV 553
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 55.2 bits (127), Expect = 2e-08
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +3
Query: 111 IDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKK 287
ID+ + D S FG++ C V +D TG S+G+G+V F + E A +++ G G +
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK---GEHFLGNR 70
Query: 288 VYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
+ + KE E+ + AK T ++V S+ + FE+YG IT
Sbjct: 71 ILEVKVATPKE---EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 55.2 bits (127), Expect = 2e-08
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Frame = +3
Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFET 227
DPS V+I N+ +T+ N+ + G + +V D+ +G S+ +GF ++
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 228 EEAANKSIEKVNGMLLNGKKVYVG---RFIPRKEREKELGEKAKLFTN----VYVKNFGE 386
E AN +EK+NG + G+++ V + I L + F + VYV N +
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186
Query: 387 DFSDEMLKDMFEKYGRITSHK 449
+ EML+++F + G++ S K
Sbjct: 187 TVTKEMLENLFSEKGKVVSAK 207
Score = 54.0 bits (124), Expect = 4e-08
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ-DETGASKGYGFVHFETEEAANKSIEKV 260
V++ NL KT+ + + + FS G ++S KV++ T S G+GFV F +EE +I +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 261 NGMLLNGKKVYVGR 302
N LL G+K+ V +
Sbjct: 239 NNSLLEGQKIRVNK 252
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 55.2 bits (127), Expect = 2e-08
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVN 263
FI L T ++ + D F +G+++ KV D+ +G S+G+GF+ F+ ++A +++I +N
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 264 GMLLNGKKVYVGRFIPRK 317
GM L+G+ + V + P +
Sbjct: 70 GMDLDGRTITVDKAQPHQ 87
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 54.8 bits (126), Expect = 3e-08
Identities = 35/118 (29%), Positives = 60/118 (50%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F++N+D +I++ + F FG++ + A G ++G+ V + AA K+ ++
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSYYDIRAAQKAARALH 268
Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
G LL G+K+ + IP KE KE + L+ N N S+E L +F YG I
Sbjct: 269 GRLLRGRKLDIRYSIP-KENPKENSSEGALWVN----NLDSSISNEELHGIFSSYGEI 321
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 54.8 bits (126), Expect = 3e-08
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
++F+ +L + + +++TFS + ++ + KV D TG SKGYGFV F E K++
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
++NG+ + + + +G PRK
Sbjct: 258 EMNGVKCSSRAMRIGPATPRK 278
Score = 47.2 bits (107), Expect = 5e-06
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254
+++ +L +D + +F++ I+S KV +++ G S+GYGFV FE+ + A+K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
+ NG + N + + + EK L E +++V + D SD +L + F EKY
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 429 GRITSHK 449
+ + K
Sbjct: 222 PSVKAAK 228
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 3e-08
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEE 233
++R +FI + ++D ++ + F+ +G ++ +V D ETG S+G+GFV F + E
Sbjct: 33 AIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSE 92
Query: 234 AANKSIEKVNGMLLNGKKVYV 296
AA+ +I+ ++G L+G+ V V
Sbjct: 93 AASSAIQALDGRDLHGRVVKV 113
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 54.4 bits (125), Expect = 3e-08
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F++ LD+ D K + D FS FGN++ K+ D +TG S+ +GFV FE E++ +I ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAK 350
K V VG R++ A+
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSAE 98
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 54.0 bits (124), Expect = 4e-08
Identities = 23/85 (27%), Positives = 53/85 (62%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+++I NLD + + ++ FS FG ++ +A+D G S+G+ F+ FE+ ++A +++ +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 261 NGMLLNGKKVYVGRFIPRKEREKEL 335
+G L+ G+K+ + P+ E +++
Sbjct: 78 DGRLI-GQKILCVQRTPKVEDGRDI 101
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 354 FTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
FT++Y+ N S+EML MF +G++
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKV 43
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 54.0 bits (124), Expect = 4e-08
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +3
Query: 69 SGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242
+G GN V++ NL +D+ A+ FS G ++ +V D ++G SKG+GFV +++ +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREK 329
+I+ ++G L+G+++ V R R +
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEARPPRRQ 288
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ NL +D+ + F + GN+ +V D+ TG S+G+GFV + + ++
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 261 NGMLLNGKKVYVGRFIPRKERE 326
NG L+G+ + V P +RE
Sbjct: 153 NGYELDGRPLRVNAGPPPPKRE 174
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 53.6 bits (123), Expect = 6e-08
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+F+ L K ++ + F+ FG + KV D +G SKG+GFV + T E + K I
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 258 VNGMLLNGKKVYVGRFIPRKERE 326
++G L+G ++ PR++ +
Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQ 139
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 53.6 bits (123), Expect = 6e-08
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Frame = +3
Query: 9 PGCRNSARGMWSQRDPSLRKSGVG---NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVA 176
P + R W+Q R+ G VF+ +L + + + +TF A + ++ KV
Sbjct: 147 PSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV 206
Query: 177 QDET-GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK----------ER 323
D T G SKGYGFV F E +++ ++NG + + + G +K
Sbjct: 207 NDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT 266
Query: 324 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
+ GE T ++V + +++ LK +F ++G + K
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVK 308
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
+ +++I +L +D + + F G + KV ++ + G S+GYGF+ F A +++
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 252 EKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
+ NG + + ++ + + E+ E + V+V + D +D ML + F+
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE--HTVFVGDLAPDVTDHMLTETFK 194
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ +D+++ + F FG ++ K+ A K GFV + A +++ +N
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIP-----AGKRCGFVQYANRACAEQALSVLN 334
Query: 264 GMLLNGKKV 290
G L G+ +
Sbjct: 335 GTQLGGQSI 343
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 53.6 bits (123), Expect = 6e-08
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+F+ +L + + +Y +FS F + +V D+ TG S+G+GFV F ++ A +I +
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 258 VNGMLLNGKKV 290
+NG L+ +++
Sbjct: 205 MNGKWLSSRQI 215
Score = 38.3 bits (85), Expect = 0.002
Identities = 28/125 (22%), Positives = 57/125 (45%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
P S +V++ N+ + + + F++ G + S K+ + + + YGFVH+
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS---YGFVHYFDRR 107
Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
+A +I +NG L G+ + V +RE + + F N++V + + +D L
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDATLYQ 162
Query: 414 MFEKY 428
F +
Sbjct: 163 SFSVF 167
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 53.2 bits (122), Expect = 8e-08
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVH 218
S PS +++ L + DTF FGN++ + D+ KG+ F+
Sbjct: 65 SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 219 FETEEAANKSIEKVNGMLLNGKKVYV 296
+ETEE A K+I+ ++G L+G+ ++V
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFV 150
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + ++ + FS FG+IL C++ + +TG S+G+GF+ F A ++SI ++
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 261 NGMLLNGKKVYVGRFIPRKERE 326
+G + + V R P+ R+
Sbjct: 69 HGRDFGDRVISVNRAEPKLGRD 90
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260
+FI L K + F FG ++ K+ D+ SKGY F+ + TEEAA +++++
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 261 NGMLLNGKKVYV 296
NG ++NG + V
Sbjct: 344 NGKIINGWMIVV 355
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 52.4 bits (120), Expect = 1e-07
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFS-AFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
+VF+ +L + + +++TFS + ++ S KV D TG SKGYGFV F E ++++
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
++NG + +++ VG P++
Sbjct: 263 EMNGAYCSNRQMRVGIATPKR 283
Score = 44.8 bits (101), Expect = 3e-05
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251
V +++ +L +D ++ FS G + S KV +++ T S+GYGFV F + AA + +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166
Query: 252 EKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EK 425
+ +G ++ N + + + EK E +V+V + D +D +L + F ++
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP-DLSVFVGDLSPDVTDVLLHETFSDR 225
Query: 426 YGRITSHK 449
Y + S K
Sbjct: 226 YPSVKSAK 233
Score = 44.0 bits (99), Expect = 5e-05
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 21 NSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200
N + G SQ D +S +F+ +D + ++ + FS FG ++S K+ K
Sbjct: 305 NGSMGYGSQSDG---ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGK 356
Query: 201 GYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344
G GFV F ++A +IE +NG ++ N ++ GR P K+ + G++
Sbjct: 357 GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR-SPNKQWRGDSGQQ 405
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 52.0 bits (119), Expect = 2e-07
Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++++ FS FG I ++ +D ET KG+GF+ F++E+ A K+++ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 261 NGMLLNGKKVYV 296
+G +++G+ ++V
Sbjct: 69 DGKIVDGRLIFV 80
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 51.6 bits (118), Expect = 2e-07
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGA 194
R RG S D +K +F+ + ++D+ + F FG + ++ +D TG
Sbjct: 115 RTIPRGSMSSNDFKTKK-----IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGR 169
Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER-----EKELGEKAKLFT 359
S+G+GFV +E+E+ + + K N + L+G +V + + P+K K G+ F
Sbjct: 170 SRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFG 229
Query: 360 NVYVKNFG 383
Y +G
Sbjct: 230 GGYGDGYG 237
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
G +F+ L + + F +G I + +D +TG +G+GFV + +K I+
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434
+ ++ GK+V + R IPR + K+F V D+ K+ F ++G
Sbjct: 102 --DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF----VGGIPSSVDDDEFKEFFMQFGE 155
Query: 435 ITSHK 449
+ H+
Sbjct: 156 LKEHQ 160
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
V++ NL T + + + FS +GN++ V +D T S+G+GFV + + A ++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 261 NGMLLNGKKVYVGRF 305
+G LNG++V V F
Sbjct: 65 DGKELNGRRVSVKLF 79
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 357 TNVYVKNFGEDFSDEMLKDMFEKYGRI 437
T VYV N +D+ML++ F YG +
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNV 29
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 51.2 bits (117), Expect = 3e-07
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224
R+ S S + ++F+K ++ + FS FG + + K+ A + T S GYG+V F
Sbjct: 48 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107
Query: 225 TEEAANKSIEKVNG 266
++E A ++E +NG
Sbjct: 108 SKEDAQSAVEAMNG 121
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILS----CKVAQDE-TGASKGYGFVHFETEEAANK 245
N+F+ +L + + A++D+FSAF + S +V D+ TG S+G+GFV F ++ A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 246 SIEKVNGMLLNGKKV 290
+I ++NG ++ +++
Sbjct: 209 AINEMNGKWVSSRQI 223
Score = 43.2 bits (97), Expect = 8e-05
Identities = 29/122 (23%), Positives = 59/122 (48%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+V+ N+ + + + F++ G I SCK+ + + + YGFVH+ A+ +I +
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
NG + G+ + V +RE + + F N++V + + +D L D F + +
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAFNSCS 175
Query: 441 SH 446
S+
Sbjct: 176 SY 177
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L +++ + TFS FG+++ K+ D E+G S+G+GFV F+ E+A +IE++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 264 G 266
G
Sbjct: 69 G 69
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 50.0 bits (114), Expect = 7e-07
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTF-SAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEK 257
+F+ +L + + + DTF + +G++ KV D T G SKGYGFV F E +++ +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 258 VNGMLLNGKKVYVG-----RFIP------RKEREKELGEKAKLFTNVYVKNFGEDFSDEM 404
+NG + + + +G +P + + G+ T ++V + +D+
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275
Query: 405 LKDMFEKYGRI 437
LK +F ++G +
Sbjct: 276 LKSIFGQFGEL 286
Score = 49.2 bits (112), Expect = 1e-06
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +3
Query: 33 GMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYG 209
G+ SQ S S V +++I +L + +D + F+ G S KV +++ TG S+GYG
Sbjct: 47 GIGSQNPGSA--SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104
Query: 210 FVHFETEEAANKSIEKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 386
F+ F + A + ++ NG + + ++ + + EK + T ++V +
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT-IFVGDLAP 163
Query: 387 DFSDEMLKDMFEK-YGRITSHK 449
+ +D ML D F+ YG + K
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAK 185
Score = 34.3 bits (75), Expect = 0.039
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ LD + + + F FG +L K+ K GFV + + +A ++ +N
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLN 316
Query: 264 GMLLNGKKV 290
G L G+ +
Sbjct: 317 GTQLGGQSI 325
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAA 239
R+ +FI L + + + FS G ++ ++ D SKG+GFV F + + A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 240 NKSIEKVNGMLLNGKKVYV 296
K++ + NG LNG+ ++V
Sbjct: 89 QKALMEFNGQQLNGRTIFV 107
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F+ L D +++ F+ FG + K+ D ETG SKG+ FV F+ E++ +I+++N
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 264 GMLLNGKKV 290
G L+G+ +
Sbjct: 107 GQELDGRNI 115
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 50.0 bits (114), Expect = 7e-07
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
+F+ +L + + + +TF A + ++ KV D TG +KGYGFV F E +++ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404
+NG+ + + + +G +K +R+ A + T+ V+V +D+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276
Query: 405 LKDMFEKYGRITSHK 449
LK++F +YG I K
Sbjct: 277 LKNVFSQYGEIVHVK 291
Score = 44.8 bits (101), Expect = 3e-05
Identities = 35/138 (25%), Positives = 64/138 (46%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
++SA G+ + DP+ VF+ LD ++ + + + FS +G I+ K+ A
Sbjct: 246 QSSAAGVTTDNDPNNT-----TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP-----AG 295
Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 377
K GFV F + A +++ +NG+ L G V + R K+ G+ ++ + Y +
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLS--WGRSPSNKQSGDPSQFYYGGYGQG 353
Query: 378 FGEDFSDEMLKDMFEKYG 431
E + M +D YG
Sbjct: 354 -QEQYGYTMPQDPNAYYG 370
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
+ ++I +L +D +Y F+ G ++S KV ++ +TG +GYGF+ F + AA + +
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 252 EKVN 263
+ N
Sbjct: 121 QTFN 124
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 50.0 bits (114), Expect = 7e-07
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
+F+ +L + + + +TF A + ++ KV D TG +KGYGFV F E +++ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404
+NG+ + + + +G +K +R+ A + T+ V+V +D+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276
Query: 405 LKDMFEKYGRITSHK 449
LK++F +YG I K
Sbjct: 277 LKNVFSQYGEIVHVK 291
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
+ ++I +L +D +Y F+ G ++S KV ++ +TG +GYGF+ F + AA + +
Sbjct: 61 IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120
Query: 252 EKVN 263
+ N
Sbjct: 121 QTFN 124
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 49.6 bits (113), Expect = 1e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKV 260
+ ++NL + + FSAFG I K+ +DE SKGY F+ F +++ A +IE +
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 261 NGMLLNGKKVYVGRFIPRK 317
+ + NG+ +Y+ P K
Sbjct: 102 DRRMYNGRMIYIDIAKPGK 120
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
++F+ +L + + + +TF + ++ KV D TG SKGYGFV F E N+++
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
++NG+ + + + + P+K
Sbjct: 177 EMNGLYCSTRPMRISAATPKK 197
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251
V ++I +L +D + FS G ++S KV +++ TG +GYGF+ F + AA +++
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 252 EKVNGMLLNGKKV 290
+ NG + G ++
Sbjct: 83 QTYNGTQMPGTEL 95
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/71 (25%), Positives = 41/71 (57%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+ + NLD+ + + + FS G ++ K+ A+KGYG+V F+T +A ++++++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 264 GMLLNGKKVYV 296
G ++ + V +
Sbjct: 294 GQVIGQQAVRI 304
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +3
Query: 69 SGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
SG N V+I N+D+ + ++ +YD G ++ + +D ET KG+ F +ETEE A
Sbjct: 2 SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIA 61
Query: 240 NKSIEKVNGML 272
+ +++ +G++
Sbjct: 62 DYAVKLFSGLV 72
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+FI L ++D +++ D FS+FG + ++A D+ +G S+G+GFV F E A + + +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 261 NGMLLNGKKVYVGRFIPR 314
+G L G+ + + + R
Sbjct: 103 DGKGLLGRPLRISFALER 120
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 57 SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHF-ETE 230
S+R +F+ + + D + + FS +G ++ K+ D ETG S+G+ FV F TE
Sbjct: 27 SIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTE 86
Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
EA+N +++G L+G+++ V
Sbjct: 87 EASNAM--QLDGQDLHGRRIRV 106
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
++F+ +L + + + +TF+ + ++ KV D TG SKGYGFV F E ++++
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
++NG + +++ VG P++
Sbjct: 274 EMNGAFCSSRQMRVGIATPKR 294
Score = 44.4 bits (100), Expect = 4e-05
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Frame = +3
Query: 42 SQRDPSLRKSG--VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGF 212
SQ+ P G V +++ +L +D ++ FS + S KV ++ +T S+GYGF
Sbjct: 105 SQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGF 164
Query: 213 VHFETEEAANKSIEKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
V F + AA ++++ +G+ + N ++ + + EK E +++V + D
Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGP-DLSIFVGDLAPD 223
Query: 390 FSDEMLKDMFEKYGRITSHK 449
SD +L + F GR S K
Sbjct: 224 VSDAVLLETFA--GRYPSVK 241
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 66 KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245
+S +F+ LD + + + FS FG ++S K+ KG GFV F ++A +
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCGFVQFANRQSAEE 377
Query: 246 SIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344
+I +NG ++ N ++ GR P K+ + G +
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGR-SPNKQWRSDSGNQ 411
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 PPGCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE 185
PP R A D R +V + NL + + + F FG + C VA D+
Sbjct: 151 PPSMREGADRKAGGSDMRSRHDE-NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQ 209
Query: 186 -TGASKGYGFVHFETEEAANKSIEKVNG 266
T S+G+GFV F + E A ++I K+NG
Sbjct: 210 KTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.0 bits (109), Expect = 3e-06
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
VFI L + + + + D G I ++ +D ++G SKGY FV F+T++ A K+IE++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 261 NGMLLNGKKV 290
+ GK +
Sbjct: 178 HSKEFKGKTI 187
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/97 (21%), Positives = 45/97 (46%)
Frame = +3
Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
S + S + V +++KN+ + + + + F G + V G + +GFVH+
Sbjct: 280 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHY 338
Query: 222 ETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332
+A K+++ +NG+ + V P+ ER+ +
Sbjct: 339 AERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHD 375
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
VF+ L +AMYD F +G+IL + D+ T SKGYGFV F+ +AA ++ E
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED- 77
Query: 261 NGMLLNGKK 287
+ ++NG++
Sbjct: 78 STPIINGRR 86
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAA 239
R++ +V + NL + + + F FG + VA D+ TG S+G+GFV+F + E A
Sbjct: 208 RRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDA 267
Query: 240 NKSIEKVNG 266
++I K+NG
Sbjct: 268 QRAINKLNG 276
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ NL T+ ++++ F G+++ +V D +TG S+GYGFV + ++ ++E +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 261 NGMLLNGKKVYV 296
+G L G+ + V
Sbjct: 239 DGFELEGRAIRV 250
Score = 32.3 bits (70), Expect = 0.16
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
++ NL +D+ + F N +V + +TG S+G+ FV E N I+ +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
+G G+ + V K ++ L + + ++V N + E L F + G +
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETE--HKLFVGNLSWTVTSESLAGAFRECGDV 203
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.0 bits (109), Expect = 3e-06
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + D + + + F +FG I+ V D E+G S+G+GFV +++ E AN +++ +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 261 NGMLLNGKKVYV 296
L+G+ + V
Sbjct: 98 QNKELDGRIIGV 109
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+++ NLD ++ N ++ FS FG + V +D T S+G FV + + E A K+ +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 261 NGMLLNGKKVYV 296
+ +LNG+K+ V
Sbjct: 119 DAKILNGRKLTV 130
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +3
Query: 51 DPSLRKSGVGN----VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFV 215
DPS VG+ +F+ L + + S +G I + ++ + TGAS+GYGFV
Sbjct: 51 DPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 110
Query: 216 HFETEEAANKSIEKVNGMLLNGKKVYV 296
+ETE+ ++ E + L++G+++ V
Sbjct: 111 EYETEKEMLRAYEDAHHSLIDGREIIV 137
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 47.2 bits (107), Expect = 5e-06
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
R S N+F++ L ++ + F +G I C V D +TG +KG+GFV F+T + A
Sbjct: 158 RDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217
Query: 240 NKSIEKVNGMLLN 278
+++ + N
Sbjct: 218 RAALKNPEKRMYN 230
Score = 30.3 bits (65), Expect = 0.63
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRIT 440
N++V+ G D + E LK FE YG IT
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEIT 190
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L+ +++ ++ FS FG ++S V +D +TG S Y F+ FE +E+ ++ K+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 261 NGMLLNGKKVYV 296
+ L++ ++++V
Sbjct: 305 DNALIDDRRIHV 316
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 46.8 bits (106), Expect = 7e-06
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257
N+F++ + + F ++G I C V D +TG KGYGFV F+T + A +++++
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 258 VNGMLLN 278
+ N
Sbjct: 469 PEKRMYN 475
Score = 32.3 bits (70), Expect = 0.16
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437
N++V+ FG D + E LK FE YG I
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEI 434
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 46.8 bits (106), Expect = 7e-06
Identities = 32/125 (25%), Positives = 58/125 (46%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
P S +V++ N+ + + + F+ G + SCK+ + E + YGFVH+
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS---YGFVHYFDRR 102
Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
+A +I +NG L G+ + V +RE + + F N++V + + +D ML
Sbjct: 103 SAGLAILSLNGRHLFGQPIKVNWAYASGQRE----DTSSHF-NIFVGDLSPEVTDAMLFT 157
Query: 414 MFEKY 428
F Y
Sbjct: 158 CFSVY 162
Score = 46.8 bits (106), Expect = 7e-06
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
N+F+ +L + + ++ FS + +V D+ TG S+G+GFV F ++ A +I++
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 258 VNGMLLNGKKV 290
+ G L +++
Sbjct: 200 ITGKWLGSRQI 210
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.4 bits (105), Expect = 9e-06
Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Frame = +3
Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVH 218
S+ +P ++K +++ N+ ++ D + D F FG ++S +V+++ +TG S+G G+V
Sbjct: 97 SKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155
Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFI---PRKEREKEL----GEKAKLFTN---VY 368
+ +A +I ++G + G+++ V + P R E+ +K ++ + VY
Sbjct: 156 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215
Query: 369 VKNFGEDFSDEMLKDMFEKYGRITS 443
V N + L++ F K+G I S
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVS 240
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +3
Query: 84 VFIKNL-DKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+ +KNL K + + + D FS G I K+ + G S+ + ++ F TE+ A +I V
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVK 374
N ++ ++ V P E + E + F+N Y K
Sbjct: 64 NKCFIDTYRISVEVADPPPREEGK--ENTEHFSNAYAK 99
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSA--FGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
+++ NL + + + F+A F + + V D G S GYGFV F T E A +I K
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350
+NG + G+ + + +F R E E G+ +
Sbjct: 256 LNGKEIMGRPITL-KFSLRSASESEDGDSVE 285
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSI 251
G +++ NL + + F +FG++ +V +DETG KG+GFV F E A ++
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 252 EKVNGML-LNGKKVYVGRFIPRKE 320
+NG L + G+ + V + E
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTE 365
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + + + TF +G I C++ +TG +G+GF+ F A+ +I+ +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 261 NGMLLNGKKVYVGRFIPR 314
+G L K + V + P+
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + + + TF +G I C++ +TG +G+GF+ F A+ +I+ +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 261 NGMLLNGKKVYVGRFIPR 314
+G L K + V + P+
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 45.6 bits (103), Expect = 2e-05
Identities = 26/118 (22%), Positives = 51/118 (43%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
V + NL + F+ ++S ++ + G GYGFV F + ANK++E+ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
G L+ K+ + + E+A + ++V N + + + F+ G +
Sbjct: 220 GEYLHNHKI----LLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEV 273
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 63 RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
RK +F+ +LDK + + F G + ++ ++ +T SKG F+ F T E A
Sbjct: 209 RKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQA 268
Query: 240 NKSIEKVNGMLLNGKK 287
++++++ ++NGKK
Sbjct: 269 KRAVKELKSPMINGKK 284
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSI 251
V +FI L + + + + D +G + ++A++ A K +GFV F+T EAA
Sbjct: 390 VKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCA 449
Query: 252 EKVN 263
+ +N
Sbjct: 450 KFIN 453
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 44.8 bits (101), Expect = 3e-05
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
R R +QR+ S+R++ V++ ++D+++ + + FS+ G ++ C++ D
Sbjct: 112 RLPGRASKAQREDSIRRT----VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVL 167
Query: 198 KGYGFVHFETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKA 347
+ + FV F ++ A ++ M+ L K + F+PR E E+E+ +
Sbjct: 168 R-FAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT 226
Query: 348 KLFTNVYVKNFGED 389
TNV KN ED
Sbjct: 227 IYCTNV-DKNATED 239
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.4 bits (100), Expect = 4e-05
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
G +++ NL TI + + F G ++ ++ D+ T S+G+GFV + E A ++++
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
Query: 255 KVNGMLLNGKKVYVG-RFIPR-KERE---KELGEKAKLFTN----VYVKNFGEDFSDEML 407
N + G+ V V +PR E E ++ + + + + VY N G + + + L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 408 KDMF 419
KD F
Sbjct: 236 KDAF 239
Score = 44.4 bits (100), Expect = 4e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
V+ NL + ++ + D F +L KV + TG S+G+GF+ FE+ E ++ +
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
NG+ + G+ + R EREK
Sbjct: 281 NGVEVEGRAL---RLNLASEREK 300
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 44.0 bits (99), Expect = 5e-05
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ + + F +G+I+ ++ D TG S+G+GFV F+TE++ ++
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 261 NGMLLNGKKVYVGRFIPRK 317
L K+V + R P++
Sbjct: 219 KVHELGDKQVEIKRAEPKR 237
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 43.6 bits (98), Expect = 6e-05
Identities = 15/42 (35%), Positives = 30/42 (71%)
Frame = +3
Query: 171 VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
+ +T KG+GF+ FE+E+ A K+++ +NG ++NG+ ++V
Sbjct: 98 IKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + + F +G I C V D+ TG +KG+GFV F+T + A +++++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 261 NGMLLN 278
+LN
Sbjct: 166 KKRILN 171
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + + F +G I C V D+ TG +KG+GFV F+T + A +++++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 261 NGMLLN 278
+LN
Sbjct: 166 KKRILN 171
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
V++ + + + FS +G I+ + +D+ TG SKG+ F+ +E + + +++ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 261 NGMLLNGKKVYVGRFIPRKEREKE 332
NG L+ G+ + V K+ E+E
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEE 121
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 43.2 bits (97), Expect = 8e-05
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-T 188
R +A W DP+L + + +F +L +++ + F+ F KV +D+ T
Sbjct: 117 RKAAGQSWE--DPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 174
Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362
G +KGYGFV F +++++NG + + + + + ++ ++E E+ K +N
Sbjct: 175 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSN 232
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 43.2 bits (97), Expect = 8e-05
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L M F FG I+ V D+ TG SKGYGFV F+ EAA ++ + +
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 261 NGML 272
N ++
Sbjct: 84 NPVI 87
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 43.2 bits (97), Expect = 8e-05
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
+F+ L ++ D F +G I CK D+ +G SKGYGF+ F++ A ++
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 252 -EKVNGMLLNGKKVYVG--RFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
+K+ + + +G + P + + + +YV N D + L + F
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPE-NVQRKIYVSNVSADIDPQKLLEFFS 248
Query: 423 KYGRI 437
++G I
Sbjct: 249 RFGEI 253
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+++ L T + + + F FG I+ V D ET S+GYGFV F+ E+A ++ +
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 261 N----GMLLNGKKVYVG 299
N G + N K +VG
Sbjct: 75 NPTIEGRITNCKLAFVG 91
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 261 NGMLLNGKKVYVGRFIPR 314
LNGK V V +P+
Sbjct: 95 FHE-LNGKMVEVKLAVPK 111
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 261 NGMLLNGKKVYVGRFIPR 314
LNGK V V +P+
Sbjct: 168 FHE-LNGKMVEVKLAVPK 184
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ F+ FG I V D T +G+GF+ +++EEA +K ++K
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 261 NGMLLNGKKVYVGRFIPR 314
LNGK V V +P+
Sbjct: 168 FHE-LNGKMVEVKLAVPK 184
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ +L+K K + + F FG++ + +DE S+G GFV + ++E A +I+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 264 G 266
G
Sbjct: 273 G 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ +L+K K + + F FG++ + +DE S+G GFV + ++E A +I+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 264 G 266
G
Sbjct: 273 G 273
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 132 DTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299
D F+ G ++S ++ GYGFV F + AN ++EK NG L+ K+++G
Sbjct: 700 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLG 755
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 261 NGMLLNGKK 287
N +++G+K
Sbjct: 79 N-PVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 261 NGMLLNGKK 287
N +++G+K
Sbjct: 79 N-PVIDGRK 86
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
VF+ L M F FG IL + D+ TG SKGYGFV F ++A +++
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 261 NGMLLNGKK 287
N +++G+K
Sbjct: 79 N-PVIDGRK 86
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ L K + + FS +G I ++ + SKG F+ +ET+E A ++E +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 264 G 266
G
Sbjct: 168 G 168
Score = 36.3 bits (80), Expect = 0.010
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFE 224
N+FI N+ + ++ + F +FG +LS KV D+ TG SK +G + F+
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 41.1 bits (92), Expect = 3e-04
Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Frame = +3
Query: 42 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
+QR+ S+R++ V++ ++D+++ + + FS G ++ C++ D + + FV F
Sbjct: 133 AQREDSIRRT----VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEF 187
Query: 222 ETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKAKLFTNVYV 371
++ A++++ ML L K + F+PR E E+E+ + +Y
Sbjct: 188 ADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTR-----TIYC 242
Query: 372 KNFGEDFSDEMLKDMFEK-YGRIT 440
N + S +++ FE G +T
Sbjct: 243 TNIDKKVSQADVRNFFESACGEVT 266
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ F FG V D T +G+GF+ +++EEA K + K
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 261 NGMLLNGKKVYVGRFIPRK 317
LNGK V V R +P++
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L ++ F FG V D T +G+GF+ +++EEA K + K
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 261 NGMLLNGKKVYVGRFIPRK 317
LNGK V V R +P++
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 41.1 bits (92), Expect = 3e-04
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++++ L+K + + FS +G I +A D+ +GY FV F +E A +I+ +N
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
Query: 264 GM--LLNGKKVYVGRFI-PRKEREKELGEKAKLF 356
G+ + + + RF P+K R LGE+ F
Sbjct: 269 GLFTIRGSDQPLIVRFADPKKPR---LGEQRSTF 299
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
VF+ L ++ + F +G IL V D+ TG SKGYGFV F EAA ++
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 41.1 bits (92), Expect = 3e-04
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
R +AR +QR+ +R++ V++ +LD+ + + + F + G ++ C++ D
Sbjct: 157 RMNARTSMAQREDVIRRT----VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVL 212
Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344
+ + F+ F EE A ++ ++G +L V V F+PR E E+E+ +
Sbjct: 213 R-FAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCAR 270
Query: 345 AKLFTNV 365
TN+
Sbjct: 271 TIYCTNI 277
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 40.7 bits (91), Expect = 4e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNG 266
++ LD+ D + + FS I ++ +D+ T S+G+ FVHF + E A K++E N
Sbjct: 462 VRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNR 521
Query: 267 MLL--NGK 284
L NGK
Sbjct: 522 TALERNGK 529
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
VF+ L ++ + F +G+IL V D+ TG SKGYGFV F EAA ++
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 40.3 bits (90), Expect = 6e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK- 257
+++ L + + F FG I+ KV D T SKG+GFV F E+A ++ E
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 258 ---VNGMLLNGKKVYVG 299
++G +N K Y+G
Sbjct: 71 NHTIDGRTVNCKLAYLG 87
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 6e-04
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
+F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
+K+ L + V+ G I T +YV N G + + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 408 KDMFEKYGRI 437
F K+G I
Sbjct: 262 LMFFSKFGEI 271
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 6e-04
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
+F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
+K+ L + V+ G I T +YV N G + + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 408 KDMFEKYGRI 437
F K+G I
Sbjct: 262 LMFFSKFGEI 271
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 6e-04
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
+F+ L + + + F +G I CK D+ +G SKGYGF+ +++ A ++
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
+K+ L + V+ G I T +YV N G + + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261
Query: 408 KDMFEKYGRI 437
F K+G I
Sbjct: 262 LMFFSKFGEI 271
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 39.9 bits (89), Expect = 8e-04
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++I NLD + N+ + + FS G++ + D +G SKG V F A ++++ N
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYN 169
Query: 264 GMLLNGK 284
+ L+GK
Sbjct: 170 NVQLDGK 176
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 39.9 bits (89), Expect = 8e-04
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
VF+ N+ + + + G ++S ++ D ETG KGYGF ++ EE A + +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 261 NGMLLNGKKVYV 296
+NG+++ V
Sbjct: 71 QSYEINGRQLRV 82
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
VF+ L + M F FG IL V D+ +G SKGYGFV F EAA +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
VF+ L + M F FG IL V D+ +G SKGYGFV F EAA +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
VF+ L + M F FG IL V D+ +G SKGYGFV F EAA +
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
R + R +QR+ +R++ V++ ++D+ + + + F FG ++ C++ D
Sbjct: 134 RMNPRTSLAQREEIIRRT----VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVL 189
Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344
+ + F+ F T+E ++ ++G +L V V F+PR E E+E+ +
Sbjct: 190 R-FAFIEF-TDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCAR 247
Query: 345 AKLFTNV 365
TN+
Sbjct: 248 TIYCTNI 254
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.7 bits (86), Expect = 0.002
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCK-VAQDETGASKGYGFVHFETEEAANKSIEKV 260
+FI+NL + + + F+ FG + S V T +G FV F+T +A+ +I
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 261 N-----GMLLNGKKVYVGRFIPRKERE----KELGEKAKLFTNVYVKNFGEDFSD 398
+ G+LL G+++ V R + +K + K+ EK N+Y+ G+ D
Sbjct: 623 DTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNLYLAKEGQILDD 677
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+ I+NL + FSA G + + ++ ETG KG+ FV F ++ A +I+K
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 261 NGMLLNGKKVYVGRFIPR 314
NG + + + V +P+
Sbjct: 393 NGHMFGKRPIAVDWAVPK 410
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKV 260
+++ L ++ ++ F FG+I K D+ + +GFV F E A+ +++ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338
+G L G+ + V +P K + E G
Sbjct: 75 DGAELYGRVLTVNYALPEKIKGGEQG 100
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
+ V++ NLD + + + D F +FG I S VA+ GY F+ FE A +I
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVAR----RPPGYAFLDFEDSRDARDAIR 56
Query: 255 KVNGMLLNGKKV 290
+V+G NG +V
Sbjct: 57 EVDGK--NGWRV 66
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248
VF+ L ++ + F FG+I+ V D++ G SKGYGFV F EAA K+
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248
VF+ L ++ + F FG+I+ V D++ G SKGYGFV F EAA K+
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266
+ +L + ++ + + F FG ++ ++A D +G+G+V F+ A K+ ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 267 MLLNGKKVYVGRFIPRKER 323
++GK V +P +++
Sbjct: 162 AQIDGKVVKATFTLPPRQK 180
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 90 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266
+ +L + ++ + + F FG ++ ++A D +G+G+V F+ A K+ ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 267 MLLNGKKVYVGRFIPRKER 323
++GK V +P +++
Sbjct: 162 AQIDGKVVKATFTLPPRQK 180
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 37.9 bits (84), Expect = 0.003
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Frame = +3
Query: 18 RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
R + R +Q+D +R++ V++ ++D+ + + + F G ++ C+V D
Sbjct: 153 RMNKRTSLAQKDDVIRRT----VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVL 208
Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLN--GKKVYVGR---------FIPRKEREKELGEK 344
+ + F+ F EE A ++ ++G +L KV + F+PR E E+E+ +
Sbjct: 209 R-FAFIEFTNEEGARAALS-MSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVR 266
Query: 345 AKLFTNV 365
TN+
Sbjct: 267 TVYCTNI 273
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 108 TIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKVNGMLLNGK 284
T++N M G++ SC A+D T KG+GF FE+ E ++I + ++G+
Sbjct: 213 TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQ 272
Query: 285 KVYV 296
++ V
Sbjct: 273 ELLV 276
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++++NL I ++ MYD F +G I ++ D+ A+KG FV +E A +++ ++
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK--ATKGTAFVVYEDIYDAKNAVDHLS 78
Query: 264 G 266
G
Sbjct: 79 G 79
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N
Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 147
Query: 264 GMLLNGKKVYV 296
+ L+GK + +
Sbjct: 148 DVQLDGKPMKI 158
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N
Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 83
Query: 264 GMLLNGKKVYV 296
+ L+GK + +
Sbjct: 84 DVQLDGKPMKI 94
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
++I NLD + N+ + + F+ G + V D +G SKG V + A +++K N
Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 149
Query: 264 GMLLNGKKVYV 296
+ L+GK + +
Sbjct: 150 DVQLDGKPMKI 160
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 138 FSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLL 275
FS FG + +VA+++ TG SK +GF+ FE E A + +N LL
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLL 126
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
++++ L + + + D F+ G + + D T S+G+GF+ ++ AN+ I
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
Query: 258 VNGMLLNGKKVYVGRFI 308
++ +L G+ + V +F+
Sbjct: 106 LDHSVLQGRVITVEKFL 122
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +3
Query: 75 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
+ V++ NLD + + + D F AFG + S VA+ GY F+ FE A +I
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVAR----RPPGYAFLDFEDPRDARDAIR 56
Query: 255 KVNGMLLNGKKV 290
++G NG +V
Sbjct: 57 ALDGK--NGWRV 66
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIE 254
N+F+ NL K + + F A GN++S +V E S GYGFV F+T++ A ++
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249
Query: 255 KVNGMLLNGKKVYVGR 302
+ G G+ + + +
Sbjct: 250 EFQGKDFLGRPIRLAK 265
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230
+PS + G + + NLD +I N ++ F A G I + ET + + FV F
Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299
Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
A +++ +N + GK++ V
Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 51 DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230
+PS + G + + NLD +I N ++ F A G I + ET + + FV F
Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299
Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
A +++ +N + GK++ V
Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.9 bits (79), Expect = 0.013
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
G +F+ L + + +FG + + +D ETG SKGY F ++ + +
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 249 IEKVNGMLLNGKKVYVGRFI-----PRKEREKEL 335
+NG+ + K + V R I P+ E+E+ L
Sbjct: 433 CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVL 466
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.9 bits (79), Expect = 0.013
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
++++ L + + + D F+ G + + D T S+G+GF+ ++ AN+ I
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT 359
++ +L G+ + V + R+ R G+ L T
Sbjct: 136 LDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRT 169
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 35.5 bits (78), Expect = 0.017
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+VF+ N+D + + F G + + D+ G KG+ +V F EA ++++ +
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-L 151
Query: 261 NGMLLNGKKVYV 296
N L+G+++ V
Sbjct: 152 NESELHGRQLKV 163
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
+F+ NL + F ++ ++ + G G GFV F + A K+++K+N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 264 GMLLNGKKVYV 296
G L +++++
Sbjct: 551 GENLRSREIFL 561
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 35.5 bits (78), Expect = 0.017
Identities = 24/112 (21%), Positives = 48/112 (42%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
+ +PS + G + I N+D T+ N + F A+G I + ET + + F+ +
Sbjct: 259 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 314
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
A +++ +N + GK + + P R + +++ V NF
Sbjct: 315 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 366
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 35.5 bits (78), Expect = 0.017
Identities = 24/112 (21%), Positives = 48/112 (42%)
Frame = +3
Query: 45 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
+ +PS + G + I N+D T+ N + F A+G I + ET + + F+ +
Sbjct: 272 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 327
Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
A +++ +N + GK + + P R + +++ V NF
Sbjct: 328 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 379
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.017
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
G++ I NL+ T+ + + F +G + + ET + FV F A K++
Sbjct: 183 GSLVIMNLEPTVSSSTLRHIFQVYGEVKQVR----ETPCKREQRFVEFFDVRDAAKALRV 238
Query: 258 VNGMLLNGKKVYV 296
+NG +++GK + +
Sbjct: 239 MNGKVISGKPMVI 251
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.1 bits (77), Expect = 0.022
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
+++ NL + + F AFG + ++ D ETG KG+GF+ F E + K
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHS-----KA 321
Query: 261 NGMLLNGKKVYVGRFI 308
+ LNGK GR I
Sbjct: 322 AQIALNGKLEIAGRTI 337
Score = 33.9 bits (74), Expect = 0.051
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260
VF + + +Y+ FS G + ++ D SKG G++ F + +I +
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228
Query: 261 NGMLLNGKKVYVGRFIPRKEREKE----LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428
+G L G+ V V K + +G +YV N + S+ L+ +FE +
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAF 288
Query: 429 GRI 437
G +
Sbjct: 289 GPV 291
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221
+FI+ L + + FS++G++ V D+ TG SKGYGFV F
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221
+FI+ L + + FS++G++ V D+ TG SKGYGFV F
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 34.7 bits (76), Expect = 0.029
Identities = 23/104 (22%), Positives = 46/104 (44%)
Frame = +3
Query: 12 GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG 191
G + R S+ +PS + + G + + NLD +I N+ + ++G + + T
Sbjct: 280 GTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIR----RTM 335
Query: 192 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
++ F AA ++ +NG+ + GKK+ + P R
Sbjct: 336 HDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTR 379
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 34.7 bits (76), Expect = 0.029
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 48 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG---NILSCKVAQDETGASKGYGFVH 218
R+P G +F+ NL I + F FG N++ K E + G+GF+
Sbjct: 155 RNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIK-GHHEVEKNAGFGFII 213
Query: 219 FETEEAANKSIEKVNGMLLNGK 284
+ E++A K++E +G+ +G+
Sbjct: 214 YAAEKSAMKAVE-FDGVEFHGR 234
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
G +F+ L + + +FG + + +D ETG SKGY F ++ + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 249 IEKVNGMLLNGKKVYVGR 302
+NG+ + K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
G +F+ L + + +FG + + +D ETG SKGY F ++ + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 249 IEKVNGMLLNGKKVYVGR 302
+NG+ + K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 72 GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
G +F+ L + + +FG + + +D ETG SKGY F ++ + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 249 IEKVNGMLLNGKKVYVGR 302
+NG+ + K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.3 bits (75), Expect = 0.039
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
VF+ N + + F +G + D GY FV+FE E A +I K++
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Query: 264 GMLLNGKKVYVGRFIPRKEREKELGE-KA----KLFTNVYVKNFGEDFSDEM-LKDMFEK 425
+K + + ER + G+ KA K ++V NF + E ++ FE
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEP 116
Query: 426 YGRITS 443
YG++T+
Sbjct: 117 YGKVTN 122
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.039
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+F+ L + + S +G + K + +G SKGY V F AA E +
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338
NG + NGK V P E K++G
Sbjct: 264 NGFIFNGKACVVAFASP--ETLKQMG 287
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.9 bits (74), Expect = 0.051
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
++++ N+D + + F + G + + D+ G KG+ +V F EA S+ +
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-IL 162
Query: 261 NGMLLNGKKVYV 296
N L+G+++ V
Sbjct: 163 NESELHGRQIKV 174
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 33.9 bits (74), Expect = 0.051
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +3
Query: 126 MYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
++ F +G +++ KV ++ + KG +VH+ + E+A + + +NG GK+V
Sbjct: 311 VHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQV 365
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 33.5 bits (73), Expect = 0.067
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 144 AFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
+ G + ++ ++ ++G KGY FV F +++ A ++I+ +N GK++
Sbjct: 114 SIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 189 GASKGYGFVHFETEEAANKSIEKVNG--MLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362
G ++G+ F+ + A S +K++ L+ V R + A
Sbjct: 212 GRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGD--SSASQVKA 269
Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437
+Y+KN D + E LK +FE +G+I
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKI 294
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 33.5 bits (73), Expect = 0.067
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 78 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
G + I NLD + + + F +G I + ET K FV F A ++ ++
Sbjct: 213 GTLVIFNLDPEVSSITLRQIFQVYGPIKELR----ETPYKKHQRFVEFYDVRDAARAFDR 268
Query: 258 VNGMLLNGKKVYV 296
+NG + GK+V +
Sbjct: 269 MNGKEIGGKQVVI 281
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.067
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
+ + + + + + + F FG I + + D +G KGY + +E +E A +I +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 261 NGMLLNGKKVYV 296
NG L + V V
Sbjct: 157 NGAELLTQNVSV 168
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 33.1 bits (72), Expect = 0.089
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203
P +R + V ++NL + N+ + + F G+I S + + E G K
Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244
Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353
+ FV +ET EAA K+ +N NG +V + G+F R+ +E+ ++
Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304
Query: 354 FTNVYVKNFGE 386
V+ + GE
Sbjct: 305 TGRVHDQTGGE 315
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 33.1 bits (72), Expect = 0.089
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Frame = +3
Query: 54 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203
P +R + V ++NL + N+ + + F G+I S + + E G K
Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244
Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353
+ FV +ET EAA K+ +N NG +V + G+F R+ +E+ ++
Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304
Query: 354 FTNVYVKNFGE 386
V+ + GE
Sbjct: 305 TGRVHDQTGGE 315
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.089
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+V++ N+D + + F G + + D+ G KG+ +V F EA ++++ +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148
Query: 261 NGMLLNGKKVYV 296
N L+G+++ V
Sbjct: 149 NESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.1 bits (72), Expect = 0.089
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+V++ N+D + + F G + + D+ G KG+ +V F EA ++++ +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148
Query: 261 NGMLLNGKKVYV 296
N L+G+++ V
Sbjct: 149 NESELHGRQLKV 160
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.7 bits (71), Expect = 0.12
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Frame = +3
Query: 75 VGNVFIKNLD--KTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF----ETEE 233
V +F+ NL T D+ Y F FG ++ V + G SKGYGF+ F T
Sbjct: 11 VTKIFVGNLTWRTTADDLRRY--FEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Query: 234 AANKSIEKVNGMLLNGKKVYVGRF 305
A S ++G N G F
Sbjct: 69 ALQNSKPIIDGRTTNCNLASAGSF 92
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
V++ NLD + + + D F AFG + + VA+ GY F+ F+ E A +I ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
V++ NLD + + + D F AFG + + VA+ GY F+ F+ E A +I ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248
+V+++NL I + + F FG I + + +D G Y FV FE + +
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 315
Query: 249 IEKVNGMLLNGKKVYV 296
I K + + L G++VY+
Sbjct: 316 I-KASPIYLGGRQVYI 330
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248
+V+++NL I + + F FG I + + +D G Y FV FE + +
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 374
Query: 249 IEKVNGMLLNGKKVYV 296
I K + + L G++VY+
Sbjct: 375 I-KASPIYLGGRQVYI 389
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.36
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 84 VFIKNLDKTIDNKAMYDTFSAFGN----ILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
VF+ NL + ++ +Y F+ N I + +V +D KG +V F+T EAAN
Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLV 344
Query: 249 IEKVNGMLLNGKKVYVGRFIP 311
++K + L +++ + R P
Sbjct: 345 LKK-GYLKLRERELRISRVKP 364
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 31.1 bits (67), Expect = 0.36
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 123 AMYDTFSAFGNILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299
A+++ FS+ G + V TGAS GY F+ + E K + +NG L G+K+ V
Sbjct: 136 ALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMKNE---TKGL-TLNGSHLGGRKIDVM 191
Query: 300 RFIPRKE 320
I R+E
Sbjct: 192 FAIDREE 198
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 30.3 bits (65), Expect = 0.63
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 306 IPRKER-EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
+P KER +K L E + L +K++ +FSDE ++YGR+
Sbjct: 338 LPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRL 382
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY--GFVHFETEEAANKSIE 254
++++K L + + F FG I + + + + KG+ GFV FE+ + +IE
Sbjct: 313 SIYLKGLPLDATPALLENEFQKFGLIRTNGI---QVRSQKGFCFGFVEFESASSMQSAIE 369
Query: 255 KVNGMLLNGKKVYV 296
+ ++LNG KV V
Sbjct: 370 -ASPVMLNGHKVVV 382
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437
+Y+KN D + E LK +FE +G+I
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKI 60
>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial (PDHE1-A) identical to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}
Length = 389
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 315 KEREKELGEKAKLFTNVYVKNFGED 389
K ++ + E ++LFTNVYVK FG +
Sbjct: 351 KAKDCPMPEPSELFTNVYVKGFGTE 375
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
F +L + K + FS G + V D ETGAS+G+ ++ + +++++ ++
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI--DLTSGFDEALQ-LS 542
Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKA 347
G + G ++V PR E +A
Sbjct: 543 GSEIGGGNIHVEESRPRDSDEGRSSNRA 570
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 249 IEKVNGMLLNGKKVYVGRFIPRKE 320
+ K+ GMLLN K+VYVG F+ K+
Sbjct: 1 MSKLIGMLLNDKQVYVGPFLRGKK 24
>At3g12930.1 68416.m01611 expressed protein contains Pfam domain
PF02410: Domain of unknown function DUF143
Length = 238
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 366 YVKNFGEDFSDEMLKDMFEKYGRI 437
++ N ED +DEM D+F KYG++
Sbjct: 78 FLSNVSED-TDEMFDDLFNKYGKV 100
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKG-YGFVHFETEEA 236
++F+ NL + +Y+TF +FG I + K GFV FE EA
Sbjct: 276 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNG 266
+DE S+G GFV + ++E A +I+ +NG
Sbjct: 2 RDEYRQSRGCGFVKYSSKETAMAAIDGLNG 31
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437
++YV N D + ++D+F KYGRI
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRI 33
>At3g32050.1 68416.m04075 hypothetical protein
Length = 175
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 162 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
S VA AS Y ++ T+E KS + + GMLL K V
Sbjct: 47 SIPVADPTVDASPNYEKMYLATQEKLQKSDQVIEGMLLKFKDV 89
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 180 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
+ TG G GFV F + + A ++EK G L ++++
Sbjct: 217 NHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFL 255
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 81 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
+V++ N D + + FS FG + GY FV+FE E A +I +
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRV-------KRVDMKSGYAFVYFEDERDAEDAIRRT 55
Query: 261 N 263
+
Sbjct: 56 D 56
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 314
GFV FE E +E ++G +N + + +PR
Sbjct: 209 GFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPR 244
>At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2)
identical to 2-isopropylmalate synthase (IMS2)
[Arabidopsis thaliana] GI:12330689
Length = 503
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 369 VKNFGEDFSDEMLKDMFEKYGRITSHK 449
+K G + SDE D+F +Y +T K
Sbjct: 436 LKELGYEISDEKFNDIFSRYRELTKDK 462
>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
putative similar to diphenol oxidase [Nicotiana
tabacum][GI:1685087]
Length = 553
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 334 NSFSRSLRGMNLPTYTFFPFSNIPLTFSIDLL 239
N+F SLR +N TY +N+P+T DLL
Sbjct: 324 NTFVNSLRSLNSKTYP----ANVPITVDHDLL 351
>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
similarity to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 598
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 87 FIKNLDKTIDNKAMYDT--FSAFGNILSCKVAQDETGASK 200
+I + I N+ DT FSA G ILS ++A+ E G +K
Sbjct: 198 YIHGIGCLIWNQDFMDTVQFSAGGEILSIRLARSELGGNK 237
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332
+DE +SK YG+ + + +E + L NG + IPR E+ K+
Sbjct: 176 EDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNG---VLNLVIPRTEKPKK 224
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 147 FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
+G + K ++ +G SKGY V F AA+ + +NG NG+ V
Sbjct: 257 YGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVV 307
>At4g16295.1 68417.m02472 self-incompatibility protein-related
similar to self-incompatibility [Papaver nudicaule]
GI:3097262
Length = 151
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 270 LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
++NG FI K +E +LGE F N + NFGE+
Sbjct: 45 VVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGEN 84
>At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein
similar to cellulase GI:575404 from [Sambucus nigra].
Length = 486
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 110 SFVKVFNKNIPNSRLAQRRISLGP 39
SFVK +NKN+PN+ I GP
Sbjct: 427 SFVKWYNKNVPNANELTGAILGGP 450
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 439 VMRPYFSNISFNISSEKS 386
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 439 VMRPYFSNISFNISSEKS 386
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 439 VMRPYFSNISFNISSEKS 386
V+ PY +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
YGF H ET N + E +G+L++ +K +
Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
YGF H ET N + E +G+L++ +K +
Sbjct: 319 YGFRHAETSVRINHNSENQSGLLIDWEKEF 348
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
YGF H ET N + E +G+L++ +K +
Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347
>At1g72580.1 68414.m08393 hypothetical protein
Length = 98
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +3
Query: 237 ANKSIEKVNGM-----LLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
+++ +EK N M LLN +G+ +P KE E+EL E F N+
Sbjct: 50 SDEEMEKFNQMMNCVKLLNNCLTKIGQSLPLKEGERELVEVEVDFKNI 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,996
Number of Sequences: 28952
Number of extensions: 189309
Number of successful extensions: 930
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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