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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D03
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...   180   4e-46
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...   173   6e-44
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)      170   4e-43
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...   157   2e-39
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...   139   9e-34
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...   135   1e-32
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...   118   2e-27
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...   100   9e-22
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    70   6e-13
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    66   1e-11
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    64   6e-11
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    64   6e-11
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    62   2e-10
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...    62   2e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    60   5e-10
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    60   5e-10
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    60   7e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    60   9e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    60   9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)...    59   1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    59   1e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    59   1e-09
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t...    58   4e-09
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    57   5e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    57   5e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    57   5e-09
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    56   8e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    56   1e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    56   1e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    56   1e-08
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    56   1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    56   1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    56   1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    56   1e-08
At5g51300.2 68418.m06360 splicing factor-related contains simila...    55   2e-08
At5g51300.1 68418.m06359 splicing factor-related contains simila...    55   2e-08
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    55   2e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    55   2e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    55   2e-08
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    55   3e-08
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    55   3e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    54   3e-08
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    54   3e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    54   4e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    54   4e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    54   6e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    54   6e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    54   6e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    53   8e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              53   1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ...    52   1e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    52   1e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    52   2e-07
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    52   2e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    52   2e-07
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    51   3e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    51   3e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    51   4e-07
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    50   7e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    50   7e-07
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat...    50   7e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    50   7e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ...    50   7e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ...    50   1e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      49   2e-06
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    49   2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    49   2e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    49   2e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    49   2e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    48   3e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    48   3e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    48   3e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    48   3e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    48   3e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat...    48   3e-06
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    48   4e-06
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    47   5e-06
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    47   5e-06
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    47   5e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    47   7e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    47   7e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    46   9e-06
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    46   2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    46   2e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    46   2e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    46   2e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    46   2e-05
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative...    46   2e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    45   3e-05
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    45   3e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    44   4e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ...    44   5e-05
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    44   6e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea...    44   6e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea...    44   6e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    43   8e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    43   8e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    43   8e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ...    43   8e-05
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    43   1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    42   2e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    42   2e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    42   2e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    42   2e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    42   2e-04
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    42   2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    42   2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    42   2e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    42   2e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    41   3e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ...    41   3e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    41   3e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    41   3e-04
At2g47310.1 68415.m05906 flowering time control protein-related ...    41   3e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ...    41   3e-04
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t...    41   3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    41   4e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ...    41   4e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    40   6e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    40   6e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    40   6e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    40   6e-04
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ...    40   8e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    40   8e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ...    40   8e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ...    40   8e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ...    40   8e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative                 40   0.001
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    39   0.002
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    39   0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    38   0.002
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    38   0.002
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    38   0.002
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    38   0.002
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    38   0.002
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi...    38   0.003
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    38   0.003
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ...    38   0.004
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    37   0.005
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ...    37   0.005
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    37   0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    37   0.005
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    37   0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    37   0.007
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    37   0.007
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    37   0.007
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    37   0.007
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    36   0.013
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    36   0.013
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr...    36   0.017
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    36   0.017
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    36   0.017
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    36   0.017
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    36   0.017
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    35   0.022
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ...    35   0.022
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ...    35   0.022
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    35   0.029
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    35   0.029
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    34   0.039
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    34   0.039
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    34   0.039
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    34   0.039
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    34   0.039
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative...    34   0.051
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    34   0.051
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    33   0.067
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    33   0.067
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    33   0.067
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    33   0.089
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    33   0.089
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    33   0.089
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    33   0.089
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    33   0.12 
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    33   0.12 
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    33   0.12 
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil...    32   0.16 
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil...    32   0.16 
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    31   0.36 
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    31   0.36 
At5g49530.1 68418.m06130 SIN-like family protein low similarity ...    30   0.63 
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil...    30   0.63 
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ...    30   0.83 
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp...    30   0.83 
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   1.1  
At2g15500.1 68415.m01774 hypothetical protein                          29   1.1  
At3g12930.1 68416.m01611 expressed protein contains Pfam domain ...    29   1.5  
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    29   1.5  
At4g16280.1 68417.m02469 flowering time control protein / FCA ga...    29   1.9  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    29   1.9  
At3g32050.1 68416.m04075 hypothetical protein                          29   1.9  
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ...    28   2.5  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    27   4.4  
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ...    27   4.4  
At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) ide...    27   5.9  
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p...    27   5.9  
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai...    27   5.9  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    27   5.9  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    27   7.7  
At4g16295.1 68417.m02472 self-incompatibility protein-related si...    27   7.7  
At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein sim...    27   7.7  
At1g80960.3 68414.m09501 F-box protein-related contains weak hit...    27   7.7  
At1g80960.2 68414.m09500 F-box protein-related contains weak hit...    27   7.7  
At1g80960.1 68414.m09499 F-box protein-related contains weak hit...    27   7.7  
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    27   7.7  
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot...    27   7.7  
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    27   7.7  
At1g72580.1 68414.m08393 hypothetical protein                          27   7.7  

>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score =  180 bits (438), Expect = 4e-46
 Identities = 88/138 (63%), Positives = 110/138 (79%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
           R M+S RDPSLRKSGVGN+FIKNLDK+ID+KA+++TFSAFG ILSCKVA D +G SKGYG
Sbjct: 117 RVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYG 176

Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           FV ++T+EAA  +I+K+NGMLLN K+VYVG F+ + +R+   GEK K FTNVYVKN  E 
Sbjct: 177 FVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS-GEKVK-FTNVYVKNLSES 234

Query: 390 FSDEMLKDMFEKYGRITS 443
            SDE L  +F ++G  TS
Sbjct: 235 LSDEELNKVFGEFGVTTS 252



 Score =   99 bits (238), Expect = 7e-22
 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 10/145 (6%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           QRDPS  K    NV++KNL +++ ++ +   F  FG   SC + +D  G SKG+GFV+FE
Sbjct: 213 QRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFE 272

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF----------TNVYVK 374
             + A ++++ +NG   + K+ +VG+   + ERE EL +K +            +N+YVK
Sbjct: 273 NSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVK 332

Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
           N  E  +D+ L++ F  +G ITS K
Sbjct: 333 NLDESVTDDKLREHFAPFGTITSCK 357



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 36/88 (40%), Positives = 56/88 (63%)
 Frame = +3

Query: 66  KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245
           KS   N+++KNLD+++ +  + + F+ FG I SCKV +D +G S+G GFV F T E A +
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382

Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREK 329
           +I ++NG ++  K +YV     RKE  K
Sbjct: 383 AITEMNGKMIVTKPLYVA-LAQRKEDRK 409



 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +3

Query: 66  KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242
           + G  ++++ +LD T+ +  +++ F+  G ++S +V +D  T  S GYG+V++ T + A+
Sbjct: 41  QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100

Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
           +++ ++N M LNG+ + V   +    R+  L +      N+++KN  +    + L + F 
Sbjct: 101 RALNELNFMALNGRAIRVMYSV----RDPSLRKSG--VGNIFIKNLDKSIDHKALHETFS 154

Query: 423 KYGRITSHK 449
            +G I S K
Sbjct: 155 AFGPILSCK 163


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score =  173 bits (420), Expect = 6e-44
 Identities = 83/138 (60%), Positives = 101/138 (73%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
           R M S RDPS R SG GNVFIKNLD +IDNKA+Y+TFS+FG ILSCKVA D  G SKGYG
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYG 175

Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           FV FE EE A  +I+K+NGMLLN K+V+VG F+ R++R +        FTNVYVKN  ++
Sbjct: 176 FVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKE 235

Query: 390 FSDEMLKDMFEKYGRITS 443
            +D+ LK  F KYG I+S
Sbjct: 236 ITDDELKKTFGKYGDISS 253



 Score =  100 bits (239), Expect = 5e-22
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 10/133 (7%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           NV++KNL K I +  +  TF  +G+I S  V +D++G S+ +GFV+F + EAA  ++EK+
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK---------AKL-FTNVYVKNFGEDFSDEMLK 410
           NG+ L    +YVGR   + +RE+EL  K          KL  +N+Y+KN  +  +DE LK
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345

Query: 411 DMFEKYGRITSHK 449
           +MF +YG +TS K
Sbjct: 346 EMFSEYGNVTSCK 358



 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 32/95 (33%), Positives = 60/95 (63%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           N+++KNLD +++++ + + FS +GN+ SCKV  +  G S+G+GFV +   E A  +++++
Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
           NG ++  K +YV     ++ER+  L     LFT +
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHL---QSLFTQI 420



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 28/123 (22%), Positives = 62/123 (50%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           ++++ +LD +++   + D F+    + + +V +D T  S GY +V+F   E A++++E +
Sbjct: 46  SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
           N   +  + + +   +  ++    L  K     NV++KN      ++ L + F  +G I 
Sbjct: 106 NYAPIRDRPIRI--MLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSSFGTIL 159

Query: 441 SHK 449
           S K
Sbjct: 160 SCK 162


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score =  170 bits (413), Expect = 4e-43
 Identities = 80/138 (57%), Positives = 103/138 (74%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
           R M S RDPS R SG GN+FIKNLD +IDNKA+++TFS+FG ILSCKVA D TG SKGYG
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179

Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           FV FE EE+A  +I+K+NGML+N K+V+VG FI R+ER ++       FTNVYVKN  ++
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKE 239

Query: 390 FSDEMLKDMFEKYGRITS 443
             ++ L+  F K+G I+S
Sbjct: 240 IGEDELRKTFGKFGVISS 257



 Score =  103 bits (246), Expect = 7e-23
 Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
 Frame = +3

Query: 48  RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227
           RD +       NV++KNL K I    +  TF  FG I S  V +D++G S+ +GFV+FE 
Sbjct: 219 RDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFEC 278

Query: 228 EEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL-----GEKAKLF-----TNVYVKN 377
            EAA  ++EK+NG+ L    +YVGR   + ERE+EL      E+   F      N+Y+KN
Sbjct: 279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKN 338

Query: 378 FGEDFSDEMLKDMFEKYGRITSHK 449
             +   DE LK+MF +YG +TS K
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSK 362



 Score = 69.7 bits (163), Expect = 8e-13
 Identities = 30/97 (30%), Positives = 58/97 (59%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           +R     KS   N+++KNLD ++D++ + + FS +GN+ S KV  +  G S+G+GFV + 
Sbjct: 321 ERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 335
             E A +++ ++NG ++  K +Y+     +++R   L
Sbjct: 381 NPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 27/123 (21%), Positives = 59/123 (47%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +++  +LD  +    ++D F    N++S +V +D+   S GY +++F     A +++E +
Sbjct: 50  SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
           N   L  + + +   +  ++    L  K     N+++KN      ++ L + F  +G I 
Sbjct: 110 NYTPLFDRPIRI--MLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTIL 163

Query: 441 SHK 449
           S K
Sbjct: 164 SCK 166


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score =  157 bits (382), Expect = 2e-39
 Identities = 73/135 (54%), Positives = 100/135 (74%)
 Frame = +3

Query: 39  WSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVH 218
           +S RD S R+SGVGN+F+KNLDK++DNK +++ FS  G I+SCKVA D  G S+GYGFV 
Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180

Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSD 398
           F+TE++A  +IEK+NG +LN K+++VG F+ RKE  +   +K K FTNVYVKN  E  +D
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFL-RKEERESAADKMK-FTNVYVKNLSEATTD 238

Query: 399 EMLKDMFEKYGRITS 443
           + LK  F +YG I+S
Sbjct: 239 DELKTTFGQYGSISS 253



 Score = 89.8 bits (213), Expect = 7e-19
 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           +R+ +  K    NV++KNL +   +  +  TF  +G+I S  V +D  G S+ +GFV+FE
Sbjct: 214 ERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFE 273

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT----------NVYVK 374
             E A +++E +NG   + K+ YVG+   + ERE EL  + +  +          N+YVK
Sbjct: 274 NPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVK 333

Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
           N  +  +DE L+++F ++G ITS K
Sbjct: 334 NLDDTVTDEKLRELFAEFGTITSCK 358



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/101 (33%), Positives = 59/101 (58%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           N+++KNLD T+ ++ + + F+ FG I SCKV +D +G SKG GFV F     A++ + ++
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383
           NG ++ GK +YV     ++ER  +L  +       ++   G
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429



 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           ++++ +LD  + +  +YD F+    ++S +V +D  T  S GYG+V++   + A K+++K
Sbjct: 47  SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106

Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           +N   LNGK + +  +  R    +  G       N++VKN  +   ++ L + F   G I
Sbjct: 107 LNYSYLNGKMIRI-TYSSRDSSARRSG-----VGNLFVKNLDKSVDNKTLHEAFSGCGTI 160

Query: 438 TSHK 449
            S K
Sbjct: 161 VSCK 164


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score =  139 bits (336), Expect = 9e-34
 Identities = 64/138 (46%), Positives = 97/138 (70%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
           R MWS R P  R++GVGNVF+KNL +++ N  + D F  FGNI+SCKVA  E G S+GYG
Sbjct: 96  RVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYG 155

Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           FV FE E+AA+ +I+ +N  ++  K++YVG+F+ + +R K   EK   +TN+Y+KN   D
Sbjct: 156 FVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP-EEK---YTNLYMKNLDAD 211

Query: 390 FSDEMLKDMFEKYGRITS 443
            S+++L++ F ++G+I S
Sbjct: 212 VSEDLLREKFAEFGKIVS 229



 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           N+++KNLD  +    + + F+ FG I+S  +A+DE    +GY FV+F+  E A ++ E V
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261

Query: 261 NGMLLNGKKVYVGRFIPRKERE-------KELGEKAKLF---TNVYVKNFGEDFSDEMLK 410
           NG     K +YVGR   + ERE       KE  E+ K+    +N+YVKN     ++E L+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321

Query: 411 DMFEKYGRITSHK 449
             F + G ITS K
Sbjct: 322 KHFSQCGTITSTK 334



 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257
           ++++ +L  ++    +YD F+ F ++ S ++ +D  +G S  YG+ +F + + AN +IEK
Sbjct: 25  SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84

Query: 258 VNGMLLNGKKVYVGRFIPRKE-REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434
            N  LLNGK + V   +   + R   +G       NV+VKN  E  ++ +L+DMF+K+G 
Sbjct: 85  KNNSLLNGKMIRVMWSVRAPDARRNGVG-------NVFVKNLPESVTNAVLQDMFKKFGN 137

Query: 435 ITSHK 449
           I S K
Sbjct: 138 IVSCK 142



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 30/87 (34%), Positives = 52/87 (59%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
           V N+++KN++  +  + +   FS  G I S K+  DE G SKG+GFV F T E A  +++
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362

Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKEL 335
             +G + +GK +YV     +++R+ +L
Sbjct: 363 TFHGQMFHGKPLYVAIAQKKEDRKMQL 389


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score =  135 bits (327), Expect = 1e-32
 Identities = 68/138 (49%), Positives = 95/138 (68%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYG 209
           R M+S+RDPS R SG GNVF+KNLD++IDNK + D FSAFG +LSCKVA+D +G SKGYG
Sbjct: 15  RIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYG 74

Query: 210 FVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           FV F ++ +   +    NG L+  + ++V  F+ R +      +K+++FTNVYVKN  E 
Sbjct: 75  FVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ-----WDKSRVFTNVYVKNLVET 129

Query: 390 FSDEMLKDMFEKYGRITS 443
            +D  LK +F ++G ITS
Sbjct: 130 ATDADLKRLFGEFGEITS 147



 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 11/134 (8%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           NV++KNL +T  +  +   F  FG I S  V +D  G S+ +GFV+FE  EAA  +IEK+
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKL-----------FTNVYVKNFGEDFSDEML 407
           NG++++ K+++VGR   +  R ++L  K +L             N+YVKN  +   +  L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239

Query: 408 KDMFEKYGRITSHK 449
           +++F ++G ITS K
Sbjct: 240 EELFSEFGTITSCK 253



 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 39/83 (46%), Positives = 54/83 (65%)
 Frame = +3

Query: 48  RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFET 227
           RD   RK G+ N+++KNLD ++DN  + + FS FG I SCKV     G SKG GFV F T
Sbjct: 215 RDMKTRK-GM-NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272

Query: 228 EEAANKSIEKVNGMLLNGKKVYV 296
            E A+K++ K+NG ++  K +YV
Sbjct: 273 SEEASKAMLKMNGKMVGNKPIYV 295



 Score = 32.3 bits (70), Expect = 0.16
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
           NV+VKN  E   ++ L DMF  +G++ S K
Sbjct: 32  NVFVKNLDESIDNKQLCDMFSAFGKVLSCK 61


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score =  118 bits (284), Expect = 2e-27
 Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 3/141 (2%)
 Frame = +3

Query: 30  RGMWSQRDPSLRK---SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200
           R MWSQRD + R+   +G  N+++KNLD +I +  +   F  FG+ILSCKV + E G SK
Sbjct: 93  RIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSK 151

Query: 201 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
           G+GFV F+TE++A  +   ++G ++ GKK++V +FI + ER    G +    TNVYVKN 
Sbjct: 152 GFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS--TNVYVKNL 209

Query: 381 GEDFSDEMLKDMFEKYGRITS 443
            E  +D+ L  +F +YG ++S
Sbjct: 210 IETVTDDCLHTLFSQYGTVSS 230



 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 48/132 (36%), Positives = 81/132 (61%), Gaps = 9/132 (6%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           NV++KNL +T+ +  ++  FS +G + S  V +D  G S+G+GFV+F   E A K++E +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEK------AK---LFTNVYVKNFGEDFSDEMLKD 413
            G+ L  KK++VG+ + + ER + L +K      AK    ++N+YVKN  E  ++  L++
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322

Query: 414 MFEKYGRITSHK 449
           +F  YG+I S K
Sbjct: 323 IFGCYGQIVSAK 334



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 33/89 (37%), Positives = 54/89 (60%)
 Frame = +3

Query: 54  PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
           P++R S   N+++KNL ++++   + + F  +G I+S KV   E G SKG+GFV F   E
Sbjct: 299 PNMRWS---NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355

Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKE 320
            + ++   +NG L++GK + V R   RKE
Sbjct: 356 ESKQAKRYLNGFLVDGKPIVV-RVAERKE 383



 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
 Frame = +3

Query: 69  SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANK 245
           S  G++++ +L   +  K + D FS    ++S  + ++  TG S  Y +++F++  +A+ 
Sbjct: 18  SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77

Query: 246 SIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL-FTNVYVKNFGEDFSDEMLKDMFE 422
           ++ ++N   L GK +     I   +R+     + +  F N+YVKN     +   L+ MF 
Sbjct: 78  AMTRLNHSDLKGKAMR----IMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133

Query: 423 KYGRITSHK 449
            +G I S K
Sbjct: 134 PFGSILSCK 142


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 99.5 bits (237), Expect = 9e-22
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 10/145 (6%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           +RD +  K+   NV++KNL ++  +  + + F  +G I S  V +D  G SKG+GFV+FE
Sbjct: 18  ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFE 77

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE--------LGEKAKLF--TNVYVK 374
             + A +++E +NG   + K+ YVGR   + ERE E        L E A  F  +N+YVK
Sbjct: 78  NADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 137

Query: 375 NFGEDFSDEMLKDMFEKYGRITSHK 449
           N     SDE LK++F  +G +TS K
Sbjct: 138 NLDPSISDEKLKEIFSPFGTVTSSK 162



 Score = 69.7 bits (163), Expect = 8e-13
 Identities = 32/80 (40%), Positives = 51/80 (63%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           N+++KNLD +I ++ + + FS FG + S KV +D  G SKG GFV F T E A +++ ++
Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 192

Query: 261 NGMLLNGKKVYVGRFIPRKE 320
           +G ++  K +YV     RKE
Sbjct: 193 SGKMIESKPLYVA-IAQRKE 211



 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = +3

Query: 267 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS 443
           MLLN K+VYVG F+ R+ER+     K K FTNVYVKN  E  +D+ LK+ F +YG+ITS
Sbjct: 1   MLLNDKQVYVGPFLRRQERDST-ANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITS 57


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILS-CKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           N+FI NLD  +D K +YDTFSAFG I S  K+ +D +TG S+G+GF+ +++ EA++ +IE
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172

Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350
            + G  L+ +++ V     +  + +  G  A+
Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTKGERHGTPAE 204



 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
 Frame = +3

Query: 57  SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEE 233
           S  ++    V++  LD  +  + +++ F   G +++  V +D  T   + YGF+ + +EE
Sbjct: 18  SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77

Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
            A+ +I+ +N + L+GK + V +   + ++  ++G       N+++ N   D  +++L D
Sbjct: 78  DADYAIKVLNMIKLHGKPIRVNK-ASQDKKSLDVG------ANLFIGNLDPDVDEKLLYD 130

Query: 414 MFEKYGRITSH 446
            F  +G I S+
Sbjct: 131 TFSAFGVIASN 141


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNI-LSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +F+ NL   +D++A+   F   G + +S  +   +T  S+G+GFV   T E A K++EK 
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           N   +NG+++ V R  PR  R +           +YV N   D     L+ +F ++G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233



 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGA 194
           R + RG   +R P +  +    +++ NL   +D+  +   FS  G ++  +V  D ETG 
Sbjct: 188 RAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGR 246

Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           S+G+GFV    E   N +I  ++G  L G+ + V
Sbjct: 247 SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+FI N+ +  +++ +  TF  FG +LS KV  D+ TG SK +GF+ ++++ AA  +I  
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399

Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
           +NG  L+GKK+ V       +++++   K  LF  +
Sbjct: 400 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 435



 Score = 37.1 bits (82), Expect = 0.005
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  L K +    +   FS +G I   ++ +     SKG  F+ +E++E A  ++E +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170

Query: 264 GM-LLNGKKV 290
           G  ++ G  V
Sbjct: 171 GRHIMEGANV 180


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+FI N+ +  +++ +  TF  FG +LS KV  D+ TG SK +GF+ ++++ AA  +I  
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390

Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
           +NG  L+GKK+ V       +++++   K  LF  +
Sbjct: 391 MNGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGL 426



 Score = 37.1 bits (82), Expect = 0.005
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  L K +    +   FS +G I   ++ +     SKG  F+ +E++E A  ++E +N
Sbjct: 102 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 161

Query: 264 GM-LLNGKKV 290
           G  ++ G  V
Sbjct: 162 GRHIMEGANV 171


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           G +FI  L K   N      F  +G I    + +D  TG  +G+GF+ F      +K IE
Sbjct: 19  GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78

Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431
             +  ++NGK+V + R IP+     +  + K K    ++V       +++ LKD F KYG
Sbjct: 79  DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133

Query: 432 RITSHK 449
            +  H+
Sbjct: 134 NVVEHQ 139



 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  +  T+    + D F+ +GN++  +V +D ET  S+G+GFV F++EE  ++ + K 
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170

Query: 261 NGMLLNGKKVYVGRFIPRK 317
           N + +   +V + +  P+K
Sbjct: 171 NMIDMADTQVEIKKAEPKK 189


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           G +FI  L K   N      F  +G I    + +D  TG  +G+GF+ F      +K IE
Sbjct: 19  GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78

Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYG 431
             +  ++NGK+V + R IP+     +  + K K    ++V       +++ LKD F KYG
Sbjct: 79  DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYG 133

Query: 432 RITSHK 449
            +  H+
Sbjct: 134 NVVEHQ 139



 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  +  T+    + D F+ +GN++  +V +D ET  S+G+GFV F++EE  ++ + K 
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170

Query: 261 N 263
           N
Sbjct: 171 N 171


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
 Frame = +3

Query: 27  ARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKG 203
           + G  S+R      S    +F+ NL   ++++A+   F   G +   +V  + ET  S+G
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRG 192

Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFG 383
           +GFV   + + A  ++EK N   LNG+ + V +  PR  R +      +    VYV N  
Sbjct: 193 FGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252

Query: 384 EDFSDEMLKDMFEKYGRI 437
            D  +  L+ +F ++G++
Sbjct: 253 WDVDNGRLEQLFSEHGKV 270



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = +3

Query: 30  RGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGY 206
           RG   +R P + +     V++ NL   +DN  +   FS  G ++  +V  D ETG S+G+
Sbjct: 229 RGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287

Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           GFV     +  N++I  ++G  L G+ + V
Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRV 317


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           ++F+ +L   + +  +++TFS  + ++ + KV  D  TG SKGYGFV F  E    K++ 
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257

Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398
           ++NG+  + + + +G   PRK    +++ G          E   + T ++V       +D
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317

Query: 399 EMLKDMFEKYGRITSHK 449
           E LK  F ++G I S K
Sbjct: 318 EDLKQPFNEFGEIVSVK 334



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254
           +++ +L   +D   +  +F++     I+S KV +++  G S+GYGFV FE+ + A+K + 
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162

Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
           + NG  + N  + +   +      EK L E      +++V +   D SD +L + F EKY
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221

Query: 429 GRITSHK 449
             + + K
Sbjct: 222 PSVKAAK 228



 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  LD ++ ++ +   F+ FG I+S K+        KG GFV F     A +++EK+N
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 360

Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344
           G ++  + V +  GR    K+   + G +
Sbjct: 361 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 389


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           ++F+ +L   + +  +++TFS  + ++ + KV  D  TG SKGYGFV F  E    K++ 
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259

Query: 255 KVNGMLLNGKKVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGEDFSD 398
           ++NG+  + + + +G   PRK    +++ G          E   + T ++V       +D
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319

Query: 399 EMLKDMFEKYGRITSHK 449
           E LK  F ++G I S K
Sbjct: 320 EDLKQPFSEFGEIVSVK 336



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           +++ +L   +D   +   F++     I+S KV +++  G+S+GYGFV FE+ + A+K ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164

Query: 255 KVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
           + NG  + N  + +   +      EK L E      +++V +   D SD +L + F EKY
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223

Query: 429 GRITSHK 449
             + + K
Sbjct: 224 PSVKAAK 230



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  LD ++ ++ +   FS FG I+S K+        KG GFV F     A +++EK+N
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLN 362

Query: 264 GMLLNGKKVYV--GRFIPRKEREKELGEK 344
           G ++  + V +  GR    K+   + G +
Sbjct: 363 GTVIGKQTVRLSWGRNPANKQPRDKYGNQ 391


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
 Frame = +3

Query: 12  GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188
           G   S+ G  +    SLR      +F+  L    D+ ++   F++FG +    V  D ET
Sbjct: 14  GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72

Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           G S+G+GFV F  E++AN +I++++G  LNG+++ V
Sbjct: 73  GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
 Frame = +3

Query: 12  GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ET 188
           G   S+ G  +    SLR      +F+  L    D+ ++   F++FG +    V  D ET
Sbjct: 14  GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRET 72

Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           G S+G+GFV F  E++AN +I++++G  LNG+++ V
Sbjct: 73  GRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRV 108


>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 153

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +FI  L    D+ ++ D F+ FG+++  KV  D ETG S+G+GFV+F  E AA  +I ++
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 261 NGMLLNGKKVYV 296
           +G  LNG+ + V
Sbjct: 97  DGKELNGRHIRV 108


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 158

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +FI  L    D+ ++ D F+ FG+++  KV  D ETG S+G+GFV+F  E AA  +I ++
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 261 NGMLLNGKKVYV 296
           +G  LNG+ + V
Sbjct: 97  DGKELNGRHIRV 108


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+FI N+ +   ++ +   F +FG +LS KV  D+ TG SK +GFV ++++ AA  +I+ 
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409

Query: 258 VNGMLLNGKKVYV 296
           +NG  L GKK+ V
Sbjct: 410 MNGRHLGGKKLKV 422



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  L K +    +   FS +G I   ++ +     SKG  F+ +ET+E A  ++E +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167

Query: 264 G 266
           G
Sbjct: 168 G 168


>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
           SP|P10979 Glycine-rich RNA-binding, abscisic
           acid-inducible protein {Zea mays}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 142

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L +   N+ + D F++FG ++  +V  D ++G SKG+GFV + T E A K+  ++
Sbjct: 36  LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95

Query: 261 NGMLLNGKKVYVGRFIPRKER 323
           N   L+G  ++V    PR+ R
Sbjct: 96  NAKFLDGWVIFVDPARPREPR 116


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           ++I  L    D  ++ D FS+F  +   +V  ++ TG S+GYGFV+F +E++AN +I  +
Sbjct: 33  LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92

Query: 261 NGMLLNGKKVYV 296
           NG  LNG  + V
Sbjct: 93  NGQELNGFNISV 104


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    D++A+   F+ +G+++  K+  D ETG S+G+GFV F+ E+A   +IE +N
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 264 GMLLNGKKVYV 296
           G  L+G+ + V
Sbjct: 71  GQDLDGRSITV 81


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    D++A+   F+ +G+++  K+  D ETG S+G+GFV F+ E+A   +IE +N
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 264 GMLLNGKKVYV 296
           G  L+G+ + V
Sbjct: 71  GQDLDGRSITV 81


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+F+ +L   + + A++D+FSAF +    +V  D+ TG S+G+GFV F  ++ A  +I +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208

Query: 258 VNGMLLNGKKV 290
           +NG  ++ +++
Sbjct: 209 MNGKWVSSRQI 219



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 28/116 (24%), Positives = 56/116 (48%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +V+  N+   +    + + F++ G I SCK+ + +  +   YGFVH+     A+ +I  +
Sbjct: 64  SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428
           NG  + G+ + V       +RE    + +  F N++V +   + +D  L D F  +
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAF 171


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
 Frame = +3

Query: 51  DPSLRKSGVGNVFIKNLD-KTIDN--KAMYDTFSAFGNILSCKVAQ---DETGASKGYGF 212
           DP + +S V NV  KNL  KT D   K  +      G ILS  + +   +E   S GYGF
Sbjct: 562 DPDVTESNVLNV--KNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 619

Query: 213 VHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREK--ELGEKAKLFTNVYVKNFGE 386
           V F++ E A      + G +L+G  + + RF   K  +K  +   K K  T ++VKN   
Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALIL-RFCENKRSDKVGKDSNKDKPCTKLHVKNIAF 678

Query: 387 DFSDEMLKDMFEKYGRITS 443
           + +   L+ +F  +G+I S
Sbjct: 679 EATKRELRQLFSPFGQIKS 697



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           G +F++NL  T   + + + FS FG I    +  D ET  S+G  ++ +   E A +++E
Sbjct: 261 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 320

Query: 255 KVNGMLLNGKKVYVGRFIPRKERE 326
           +++     G+ +++   +P K RE
Sbjct: 321 ELDNSSFQGRLLHI---LPAKHRE 341



 Score = 34.3 bits (75), Expect = 0.039
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 90  IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAA 239
           +KN+      + +   FS FG I S ++ +   G   GY FV F T++ A
Sbjct: 673 VKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEA 722


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
 Frame = +3

Query: 12  GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185
           G   S R  +     S   SG GN +++ NL   +D+ A+ + F+  G ++  +V  D +
Sbjct: 226 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 285

Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
           +G SKG+GFV   + +   K+I  +NG  L+G+++ V     R  R
Sbjct: 286 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331



 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+ NL   +D+  +   F + GN+   +V  D+ TG S+G+GFV   T      + ++ 
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160

Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
           NG    G+ + V    P  +RE+
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
 Frame = +3

Query: 12  GCRNSARGMWSQRDPSLRKSGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-E 185
           G   S R  +     S   SG GN +++ NL   +D+ A+ + F+  G ++  +V  D +
Sbjct: 234 GYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRD 293

Query: 186 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
           +G SKG+GFV   + +   K+I  +NG  L+G+++ V     R  R
Sbjct: 294 SGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339



 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+ NL   +D+  +   F + GN+   +V  D+ TG S+G+GFV   T      + ++ 
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160

Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
           NG    G+ + V    P  +RE+
Sbjct: 161 NGYEFEGRPLRVNAGPPPPKREE 183


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +3

Query: 48  RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224
           R+ S   S + ++F+K    ++    +   FS FG + + K+ A + T  S GYG+V F 
Sbjct: 67  REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126

Query: 225 TEEAANKSIEKVNGMLLNGKKVYV 296
           ++E A  ++E +NG   +G+ + V
Sbjct: 127 SKEDAQSAVEAMNGKFFDGRFILV 150


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    +++ +  TFS FG+++  K+  D E+G S+G+GFV F+ E+A   +IE++N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 264 GMLLNGKKVYV 296
           G  L+G+ + V
Sbjct: 69  GKELDGRVITV 79


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    +++ +  TFS FG+++  K+  D E+G S+G+GFV F+ E+A   +IE++N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 264 GMLLNGKKVYV 296
           G  L+G+ + V
Sbjct: 69  GKELDGRVITV 79


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    +++ +  TFS FG+++  K+  D E+G S+G+GFV F+ E+A   +IE++N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 264 GMLLNGKKVYV 296
           G  L+G+ + V
Sbjct: 69  GKELDGRVITV 79


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N++I  L   +++  + + FS+FG I+  KV +D  TG SKGYGFV +   + AN +++ 
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540

Query: 258 VNGMLLNGKKVYV 296
           +NG    G+ + V
Sbjct: 541 MNGYRFEGRTLAV 553


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N++I  L   +++  + + FS+FG I+  KV +D  TG SKGYGFV +   + AN +++ 
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540

Query: 258 VNGMLLNGKKVYV 296
           +NG    G+ + V
Sbjct: 541 MNGYRFEGRTLAV 553


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
 Frame = +3

Query: 111 IDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKK 287
           ID+  + D  S FG++  C V +D  TG S+G+G+V F + E A  +++   G    G +
Sbjct: 14  IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK---GEHFLGNR 70

Query: 288 VYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
           +   +    KE   E+ + AK  T ++V       S+   +  FE+YG IT
Sbjct: 71  ILEVKVATPKE---EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
 Frame = +3

Query: 51  DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFET 227
           DPS        V+I N+ +T+ N+ +       G +   +V  D+ +G S+ +GF   ++
Sbjct: 69  DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 228 EEAANKSIEKVNGMLLNGKKVYVG---RFIPRKEREKELGEKAKLFTN----VYVKNFGE 386
            E AN  +EK+NG  + G+++ V    + I        L  +   F +    VYV N  +
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 387 DFSDEMLKDMFEKYGRITSHK 449
             + EML+++F + G++ S K
Sbjct: 187 TVTKEMLENLFSEKGKVVSAK 207



 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQ-DETGASKGYGFVHFETEEAANKSIEKV 260
           V++ NL KT+  + + + FS  G ++S KV++   T  S G+GFV F +EE    +I  +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238

Query: 261 NGMLLNGKKVYVGR 302
           N  LL G+K+ V +
Sbjct: 239 NNSLLEGQKIRVNK 252


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVN 263
           FI  L  T  ++ + D F  +G+++  KV  D+ +G S+G+GF+ F+ ++A +++I  +N
Sbjct: 10  FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69

Query: 264 GMLLNGKKVYVGRFIPRK 317
           GM L+G+ + V +  P +
Sbjct: 70  GMDLDGRTITVDKAQPHQ 87


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 35/118 (29%), Positives = 60/118 (50%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F++N+D +I++  +   F  FG++ +   A    G ++G+  V +    AA K+   ++
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTA----GKNRGFIMVSYYDIRAAQKAARALH 268

Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           G LL G+K+ +   IP KE  KE   +  L+ N    N     S+E L  +F  YG I
Sbjct: 269 GRLLRGRKLDIRYSIP-KENPKENSSEGALWVN----NLDSSISNEELHGIFSSYGEI 321


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           ++F+ +L   + +  +++TFS  + ++ + KV  D  TG SKGYGFV F  E    K++ 
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257

Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
           ++NG+  + + + +G   PRK
Sbjct: 258 EMNGVKCSSRAMRIGPATPRK 278



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGN--ILSCKVAQDET-GASKGYGFVHFETEEAANKSIE 254
           +++ +L   +D   +  +F++     I+S KV +++  G S+GYGFV FE+ + A+K + 
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162

Query: 255 KVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKY 428
           + NG  + N  + +   +      EK L E      +++V +   D SD +L + F EKY
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRL-ENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221

Query: 429 GRITSHK 449
             + + K
Sbjct: 222 PSVKAAK 228


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
 Frame = +3

Query: 57  SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEE 233
           ++R      +FI  +  ++D  ++ + F+ +G ++  +V  D ETG S+G+GFV F + E
Sbjct: 33  AIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSE 92

Query: 234 AANKSIEKVNGMLLNGKKVYV 296
           AA+ +I+ ++G  L+G+ V V
Sbjct: 93  AASSAIQALDGRDLHGRVVKV 113


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F++ LD+  D K + D FS FGN++  K+  D +TG S+ +GFV FE E++   +I  ++
Sbjct: 10  FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69

Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAK 350
                 K V VG       R++     A+
Sbjct: 70  VEESRSKCVNVGSITVEVARQRRKNRSAE 98


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 23/85 (27%), Positives = 53/85 (62%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +++I NLD  +  + ++  FS FG ++   +A+D  G S+G+ F+ FE+ ++A +++  +
Sbjct: 18  SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77

Query: 261 NGMLLNGKKVYVGRFIPRKEREKEL 335
           +G L+ G+K+   +  P+ E  +++
Sbjct: 78  DGRLI-GQKILCVQRTPKVEDGRDI 101



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 354 FTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           FT++Y+ N     S+EML  MF  +G++
Sbjct: 16  FTSLYIANLDAQVSEEMLFLMFSDFGKV 43


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = +3

Query: 69  SGVGN-VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAAN 242
           +G GN V++ NL   +D+ A+   FS  G ++  +V  D ++G SKG+GFV +++ +   
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259

Query: 243 KSIEKVNGMLLNGKKVYVGRFIPRKEREK 329
            +I+ ++G  L+G+++ V     R  R +
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEARPPRRQ 288



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+ NL   +D+  +   F + GN+   +V  D+ TG S+G+GFV   +      + ++ 
Sbjct: 93  LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query: 261 NGMLLNGKKVYVGRFIPRKERE 326
           NG  L+G+ + V    P  +RE
Sbjct: 153 NGYELDGRPLRVNAGPPPPKRE 174


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+F+  L K   ++ +   F+ FG +   KV  D  +G SKG+GFV + T E + K I  
Sbjct: 57  NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116

Query: 258 VNGMLLNGKKVYVGRFIPRKERE 326
           ++G  L+G  ++     PR++ +
Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQ 139


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
 Frame = +3

Query: 9   PGCRNSARGMWSQRDPSLRKSGVG---NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVA 176
           P    + R  W+Q     R+   G    VF+ +L   + +  + +TF A + ++   KV 
Sbjct: 147 PSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV 206

Query: 177 QDET-GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK----------ER 323
            D T G SKGYGFV F  E    +++ ++NG   + + +  G    +K            
Sbjct: 207 NDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT 266

Query: 324 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK 449
           +   GE     T ++V    +  +++ LK +F ++G +   K
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVK 308



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
           + +++I +L   +D   + + F   G   + KV ++ + G S+GYGF+ F     A +++
Sbjct: 79  IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138

Query: 252 EKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
           +  NG  + + ++ +   +      E+   E  +    V+V +   D +D ML + F+
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE--HTVFVGDLAPDVTDHMLTETFK 194



 Score = 33.9 bits (74), Expect = 0.051
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  +D+++    +   F  FG ++  K+      A K  GFV +     A +++  +N
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIP-----AGKRCGFVQYANRACAEQALSVLN 334

Query: 264 GMLLNGKKV 290
           G  L G+ +
Sbjct: 335 GTQLGGQSI 343


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+F+ +L   + +  +Y +FS F +    +V  D+ TG S+G+GFV F  ++ A  +I +
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204

Query: 258 VNGMLLNGKKV 290
           +NG  L+ +++
Sbjct: 205 MNGKWLSSRQI 215



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 28/125 (22%), Positives = 57/125 (45%)
 Frame = +3

Query: 54  PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
           P    S   +V++ N+   +    + + F++ G + S K+ + +  +   YGFVH+    
Sbjct: 51  PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS---YGFVHYFDRR 107

Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
           +A  +I  +NG  L G+ + V       +RE    + +  F N++V +   + +D  L  
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDATLYQ 162

Query: 414 MFEKY 428
            F  +
Sbjct: 163 SFSVF 167


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +3

Query: 42  SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVH 218
           S   PS        +++  L        + DTF  FGN++   +  D+     KG+ F+ 
Sbjct: 65  SSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124

Query: 219 FETEEAANKSIEKVNGMLLNGKKVYV 296
           +ETEE A K+I+ ++G  L+G+ ++V
Sbjct: 125 YETEEEAMKAIQGMHGKFLDGRVIFV 150


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L   + ++ +   FS FG+IL C++  + +TG S+G+GF+ F    A ++SI ++
Sbjct: 9   IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68

Query: 261 NGMLLNGKKVYVGRFIPRKERE 326
           +G     + + V R  P+  R+
Sbjct: 69  HGRDFGDRVISVNRAEPKLGRD 90


>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 374

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260
           +FI  L      K +   F  FG ++  K+  D+    SKGY F+ + TEEAA  +++++
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343

Query: 261 NGMLLNGKKVYV 296
           NG ++NG  + V
Sbjct: 344 NGKIINGWMIVV 355


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFS-AFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           +VF+ +L   + +  +++TFS  + ++ S KV  D  TG SKGYGFV F  E   ++++ 
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262

Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
           ++NG   + +++ VG   P++
Sbjct: 263 EMNGAYCSNRQMRVGIATPKR 283



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251
           V  +++ +L   +D   ++  FS  G + S KV +++ T  S+GYGFV F +  AA + +
Sbjct: 107 VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVL 166

Query: 252 EKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EK 425
           +  +G ++ N  + +   +      EK   E      +V+V +   D +D +L + F ++
Sbjct: 167 QNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP-DLSVFVGDLSPDVTDVLLHETFSDR 225

Query: 426 YGRITSHK 449
           Y  + S K
Sbjct: 226 YPSVKSAK 233



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
 Frame = +3

Query: 21  NSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASK 200
           N + G  SQ D    +S    +F+  +D  + ++ +   FS FG ++S K+        K
Sbjct: 305 NGSMGYGSQSDG---ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGK 356

Query: 201 GYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344
           G GFV F   ++A  +IE +NG ++  N  ++  GR  P K+   + G++
Sbjct: 357 GCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR-SPNKQWRGDSGQQ 405


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L     ++++   FS FG I   ++ +D ET   KG+GF+ F++E+ A K+++ +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 261 NGMLLNGKKVYV 296
           +G +++G+ ++V
Sbjct: 69  DGKIVDGRLIFV 80


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGA 194
           R   RG  S  D   +K     +F+  +  ++D+    + F  FG +   ++ +D  TG 
Sbjct: 115 RTIPRGSMSSNDFKTKK-----IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGR 169

Query: 195 SKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER-----EKELGEKAKLFT 359
           S+G+GFV +E+E+  +  + K N + L+G +V + +  P+K        K  G+    F 
Sbjct: 170 SRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFG 229

Query: 360 NVYVKNFG 383
             Y   +G
Sbjct: 230 GGYGDGYG 237



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           G +F+  L +   +      F  +G I    + +D +TG  +G+GFV +      +K I+
Sbjct: 42  GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101

Query: 255 KVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGR 434
             +  ++ GK+V + R IPR        +  K+F    V        D+  K+ F ++G 
Sbjct: 102 --DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF----VGGIPSSVDDDEFKEFFMQFGE 155

Query: 435 ITSHK 449
           +  H+
Sbjct: 156 LKEHQ 160


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           V++ NL  T  +  + + FS +GN++   V +D  T  S+G+GFV + +   A  ++  +
Sbjct: 5   VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64

Query: 261 NGMLLNGKKVYVGRF 305
           +G  LNG++V V  F
Sbjct: 65  DGKELNGRRVSVKLF 79



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 357 TNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           T VYV N     +D+ML++ F  YG +
Sbjct: 3   TRVYVGNLSPTTTDDMLREAFSGYGNV 29


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +3

Query: 48  RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV-AQDETGASKGYGFVHFE 224
           R+ S   S + ++F+K    ++    +   FS FG + + K+ A + T  S GYG+V F 
Sbjct: 48  REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 107

Query: 225 TEEAANKSIEKVNG 266
           ++E A  ++E +NG
Sbjct: 108 SKEDAQSAVEAMNG 121


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILS----CKVAQDE-TGASKGYGFVHFETEEAANK 245
           N+F+ +L   + + A++D+FSAF +  S     +V  D+ TG S+G+GFV F  ++ A  
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208

Query: 246 SIEKVNGMLLNGKKV 290
           +I ++NG  ++ +++
Sbjct: 209 AINEMNGKWVSSRQI 223



 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 29/122 (23%), Positives = 59/122 (48%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +V+  N+   +    + + F++ G I SCK+ + +  +   YGFVH+     A+ +I  +
Sbjct: 64  SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 440
           NG  + G+ + V       +RE    + +  F N++V +   + +D  L D F  +   +
Sbjct: 121 NGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAALFDSFSAFNSCS 175

Query: 441 SH 446
           S+
Sbjct: 176 SY 177


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    +++ +  TFS FG+++  K+  D E+G S+G+GFV F+ E+A   +IE++N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 264 G 266
           G
Sbjct: 69  G 69


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTF-SAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEK 257
           +F+ +L   + +  + DTF + +G++   KV  D T G SKGYGFV F  E    +++ +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215

Query: 258 VNGMLLNGKKVYVG-----RFIP------RKEREKELGEKAKLFTNVYVKNFGEDFSDEM 404
           +NG   + + + +G       +P      +  +    G+     T ++V     + +D+ 
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDE 275

Query: 405 LKDMFEKYGRI 437
           LK +F ++G +
Sbjct: 276 LKSIFGQFGEL 286



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
 Frame = +3

Query: 33  GMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYG 209
           G+ SQ   S   S V +++I +L + +D   +   F+  G   S KV +++ TG S+GYG
Sbjct: 47  GIGSQNPGSA--SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104

Query: 210 FVHFETEEAANKSIEKVNGM-LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 386
           F+ F +   A + ++  NG  + + ++ +   +      EK    +    T ++V +   
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT-IFVGDLAP 163

Query: 387 DFSDEMLKDMFEK-YGRITSHK 449
           + +D ML D F+  YG +   K
Sbjct: 164 EVTDYMLSDTFKNVYGSVKGAK 185



 Score = 34.3 bits (75), Expect = 0.039
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  LD  + +  +   F  FG +L  K+        K  GFV +  + +A  ++  +N
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLN 316

Query: 264 GMLLNGKKV 290
           G  L G+ +
Sbjct: 317 GTQLGGQSI 325


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +3

Query: 63  RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAA 239
           R+     +FI  L      + + + FS  G ++  ++  D     SKG+GFV F + + A
Sbjct: 29  RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88

Query: 240 NKSIEKVNGMLLNGKKVYV 296
            K++ + NG  LNG+ ++V
Sbjct: 89  QKALMEFNGQQLNGRTIFV 107


>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein from {Daucus
           carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
           napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 185

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F+  L    D +++   F+ FG +   K+  D ETG SKG+ FV F+ E++   +I+++N
Sbjct: 47  FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106

Query: 264 GMLLNGKKV 290
           G  L+G+ +
Sbjct: 107 GQELDGRNI 115


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           +F+ +L   + +  + +TF A + ++   KV  D  TG +KGYGFV F  E    +++ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216

Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404
           +NG+  + + + +G    +K    +R+      A + T+       V+V       +D+ 
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276

Query: 405 LKDMFEKYGRITSHK 449
           LK++F +YG I   K
Sbjct: 277 LKNVFSQYGEIVHVK 291



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 35/138 (25%), Positives = 64/138 (46%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
           ++SA G+ +  DP+        VF+  LD ++ +  + + FS +G I+  K+      A 
Sbjct: 246 QSSAAGVTTDNDPNNT-----TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP-----AG 295

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 377
           K  GFV F  +  A +++  +NG+ L G  V +     R    K+ G+ ++ +   Y + 
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLS--WGRSPSNKQSGDPSQFYYGGYGQG 353

Query: 378 FGEDFSDEMLKDMFEKYG 431
             E +   M +D    YG
Sbjct: 354 -QEQYGYTMPQDPNAYYG 370



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
           +  ++I +L   +D   +Y  F+  G ++S KV ++ +TG  +GYGF+ F +  AA + +
Sbjct: 61  IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120

Query: 252 EKVN 263
           +  N
Sbjct: 121 QTFN 124


>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 306

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           +F+ +L   + +  + +TF A + ++   KV  D  TG +KGYGFV F  E    +++ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216

Query: 258 VNGMLLNGKKVYVGRFIPRK----EREKELGEKAKLFTN-------VYVKNFGEDFSDEM 404
           +NG+  + + + +G    +K    +R+      A + T+       V+V       +D+ 
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 276

Query: 405 LKDMFEKYGRITSHK 449
           LK++F +YG I   K
Sbjct: 277 LKNVFSQYGEIVHVK 291



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSI 251
           +  ++I +L   +D   +Y  F+  G ++S KV ++ +TG  +GYGF+ F +  AA + +
Sbjct: 61  IRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL 120

Query: 252 EKVN 263
           +  N
Sbjct: 121 QTFN 124


>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
           protein low similarity to heterogeneous nuclear
           ribonucleoprotein G [Mus musculus] GI:5579009; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 152

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKV 260
           + ++NL  +     +   FSAFG I   K+ +DE    SKGY F+ F +++ A  +IE +
Sbjct: 42  IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101

Query: 261 NGMLLNGKKVYVGRFIPRK 317
           +  + NG+ +Y+    P K
Sbjct: 102 DRRMYNGRMIYIDIAKPGK 120


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIE 254
           ++F+ +L   + +  + +TF   + ++   KV  D  TG SKGYGFV F  E   N+++ 
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176

Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
           ++NG+  + + + +    P+K
Sbjct: 177 EMNGLYCSTRPMRISAATPKK 197



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI 251
           V  ++I +L   +D   +   FS  G ++S KV +++ TG  +GYGF+ F +  AA +++
Sbjct: 23  VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82

Query: 252 EKVNGMLLNGKKV 290
           +  NG  + G ++
Sbjct: 83  QTYNGTQMPGTEL 95



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/71 (25%), Positives = 41/71 (57%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           + + NLD+ +  + +   FS  G ++  K+      A+KGYG+V F+T  +A ++++++ 
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQ 293

Query: 264 GMLLNGKKVYV 296
           G ++  + V +
Sbjct: 294 GQVIGQQAVRI 304


>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
 Frame = +3

Query: 69  SGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
           SG  N  V+I N+D+ + ++ +YD     G ++   + +D ET   KG+ F  +ETEE A
Sbjct: 2   SGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIA 61

Query: 240 NKSIEKVNGML 272
           + +++  +G++
Sbjct: 62  DYAVKLFSGLV 72


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +FI  L  ++D +++ D FS+FG +   ++A D+ +G S+G+GFV F  E  A  + + +
Sbjct: 43  LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102

Query: 261 NGMLLNGKKVYVGRFIPR 314
           +G  L G+ + +   + R
Sbjct: 103 DGKGLLGRPLRISFALER 120


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +3

Query: 57  SLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHF-ETE 230
           S+R      +F+  +  + D   + + FS +G ++  K+  D ETG S+G+ FV F  TE
Sbjct: 27  SIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTE 86

Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
           EA+N    +++G  L+G+++ V
Sbjct: 87  EASNAM--QLDGQDLHGRRIRV 106


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           ++F+ +L   + +  + +TF+  + ++   KV  D  TG SKGYGFV F  E   ++++ 
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273

Query: 255 KVNGMLLNGKKVYVGRFIPRK 317
           ++NG   + +++ VG   P++
Sbjct: 274 EMNGAFCSSRQMRVGIATPKR 294



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
 Frame = +3

Query: 42  SQRDPSLRKSG--VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGF 212
           SQ+ P     G  V  +++ +L   +D   ++  FS    + S KV ++ +T  S+GYGF
Sbjct: 105 SQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGF 164

Query: 213 VHFETEEAANKSIEKVNGMLL-NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           V F +  AA ++++  +G+ + N ++ +   +      EK   E      +++V +   D
Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGP-DLSIFVGDLAPD 223

Query: 390 FSDEMLKDMFEKYGRITSHK 449
            SD +L + F   GR  S K
Sbjct: 224 VSDAVLLETFA--GRYPSVK 241



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = +3

Query: 66  KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANK 245
           +S    +F+  LD  +  + +   FS FG ++S K+        KG GFV F   ++A +
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCGFVQFANRQSAEE 377

Query: 246 SIEKVNGMLL--NGKKVYVGRFIPRKEREKELGEK 344
           +I  +NG ++  N  ++  GR  P K+   + G +
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGR-SPNKQWRSDSGNQ 411


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 6   PPGCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE 185
           PP  R  A       D   R     +V + NL +      + + F  FG +  C VA D+
Sbjct: 151 PPSMREGADRKAGGSDMRSRHDE-NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQ 209

Query: 186 -TGASKGYGFVHFETEEAANKSIEKVNG 266
            T  S+G+GFV F + E A ++I K+NG
Sbjct: 210 KTSMSRGFGFVSFVSREDAQRAINKLNG 237


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           VFI  L + +  + + D     G I   ++ +D ++G SKGY FV F+T++ A K+IE++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177

Query: 261 NGMLLNGKKV 290
           +     GK +
Sbjct: 178 HSKEFKGKTI 187



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/97 (21%), Positives = 45/97 (46%)
 Frame = +3

Query: 42  SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
           S  + S   + V  +++KN+ +    + + + F   G +    V     G  + +GFVH+
Sbjct: 280 SSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHY 338

Query: 222 ETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332
               +A K+++      +NG+ + V    P+ ER+ +
Sbjct: 339 AERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHD 375


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           VF+  L      +AMYD F  +G+IL   +  D+ T  SKGYGFV F+  +AA ++ E  
Sbjct: 19  VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED- 77

Query: 261 NGMLLNGKK 287
           +  ++NG++
Sbjct: 78  STPIINGRR 86


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +3

Query: 63  RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAA 239
           R++   +V + NL +      + + F  FG +    VA D+ TG S+G+GFV+F + E A
Sbjct: 208 RRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDA 267

Query: 240 NKSIEKVNG 266
            ++I K+NG
Sbjct: 268 QRAINKLNG 276


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+ NL  T+ ++++   F   G+++  +V  D +TG S+GYGFV + ++     ++E +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238

Query: 261 NGMLLNGKKVYV 296
           +G  L G+ + V
Sbjct: 239 DGFELEGRAIRV 250



 Score = 32.3 bits (70), Expect = 0.16
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           ++  NL   +D+  +      F N    +V  + +TG S+G+ FV     E  N  I+ +
Sbjct: 87  LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           +G    G+ + V      K  ++ L  + +    ++V N     + E L   F + G +
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETE--HKLFVGNLSWTVTSESLAGAFRECGDV 203


>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
           similar to glycine-rich RNA-binding protein from
           {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
           sativum]; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 155

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  + D + + + F +FG I+   V  D E+G S+G+GFV +++ E AN +++ +
Sbjct: 38  IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97

Query: 261 NGMLLNGKKVYV 296
               L+G+ + V
Sbjct: 98  QNKELDGRIIGV 109


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +++ NLD ++ N  ++  FS FG +    V +D  T  S+G  FV + + E A K+   +
Sbjct: 59  LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118

Query: 261 NGMLLNGKKVYV 296
           +  +LNG+K+ V
Sbjct: 119 DAKILNGRKLTV 130


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
 Frame = +3

Query: 51  DPSLRKSGVGN----VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFV 215
           DPS     VG+    +F+  L        + +  S +G I + ++ +   TGAS+GYGFV
Sbjct: 51  DPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 110

Query: 216 HFETEEAANKSIEKVNGMLLNGKKVYV 296
            +ETE+   ++ E  +  L++G+++ V
Sbjct: 111 EYETEKEMLRAYEDAHHSLIDGREIIV 137


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 63  RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
           R S   N+F++ L     ++ +   F  +G I  C V  D +TG +KG+GFV F+T + A
Sbjct: 158 RDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217

Query: 240 NKSIEKVNGMLLN 278
             +++     + N
Sbjct: 218 RAALKNPEKRMYN 230



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRIT 440
           N++V+  G D + E LK  FE YG IT
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEIT 190


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L+   +++ ++  FS FG ++S  V +D +TG S  Y F+ FE +E+  ++  K+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304

Query: 261 NGMLLNGKKVYV 296
           +  L++ ++++V
Sbjct: 305 DNALIDDRRIHV 316


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK 257
           N+F++        + +   F ++G I  C V  D +TG  KGYGFV F+T + A +++++
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468

Query: 258 VNGMLLN 278
               + N
Sbjct: 469 PEKRMYN 475



 Score = 32.3 bits (70), Expect = 0.16
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437
           N++V+ FG D + E LK  FE YG I
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEI 434


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 32/125 (25%), Positives = 58/125 (46%)
 Frame = +3

Query: 54  PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEE 233
           P    S   +V++ N+   +    + + F+  G + SCK+ + E  +   YGFVH+    
Sbjct: 46  PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS---YGFVHYFDRR 102

Query: 234 AANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 413
           +A  +I  +NG  L G+ + V       +RE    + +  F N++V +   + +D ML  
Sbjct: 103 SAGLAILSLNGRHLFGQPIKVNWAYASGQRE----DTSSHF-NIFVGDLSPEVTDAMLFT 157

Query: 414 MFEKY 428
            F  Y
Sbjct: 158 CFSVY 162



 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           N+F+ +L   + +  ++  FS +      +V  D+ TG S+G+GFV F  ++ A  +I++
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199

Query: 258 VNGMLLNGKKV 290
           + G  L  +++
Sbjct: 200 ITGKWLGSRQI 210


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
 Frame = +3

Query: 42  SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVH 218
           S+ +P ++K     +++ N+ ++ D   + D F  FG ++S +V+++ +TG S+G G+V 
Sbjct: 97  SKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVT 155

Query: 219 FETEEAANKSIEKVNGMLLNGKKVYVGRFI---PRKEREKEL----GEKAKLFTN---VY 368
             +  +A  +I  ++G  + G+++ V   +   P   R  E+     +K  ++ +   VY
Sbjct: 156 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215

Query: 369 VKNFGEDFSDEMLKDMFEKYGRITS 443
           V N       + L++ F K+G I S
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVS 240


>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = +3

Query: 84  VFIKNL-DKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           + +KNL  K +  + + D FS  G I   K+ +   G S+ + ++ F TE+ A  +I  V
Sbjct: 4   IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVK 374
           N   ++  ++ V    P    E +  E  + F+N Y K
Sbjct: 64  NKCFIDTYRISVEVADPPPREEGK--ENTEHFSNAYAK 99


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSA--FGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
           +++ NL     +  + + F+A  F  + +  V  D  G S GYGFV F T E A  +I K
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255

Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAK 350
           +NG  + G+ + + +F  R   E E G+  +
Sbjct: 256 LNGKEIMGRPITL-KFSLRSASESEDGDSVE 285


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 72  GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSI 251
           G   +++ NL   +    +   F +FG++   +V +DETG  KG+GFV F   E A  ++
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342

Query: 252 EKVNGML-LNGKKVYVGRFIPRKE 320
             +NG L + G+ + V     + E
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTE 365


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L   +  + +  TF  +G I  C++    +TG  +G+GF+ F     A+ +I+ +
Sbjct: 14  IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73

Query: 261 NGMLLNGKKVYVGRFIPR 314
           +G  L  K + V +  P+
Sbjct: 74  HGRELGNKVISVNKAEPK 91


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L   +  + +  TF  +G I  C++    +TG  +G+GF+ F     A+ +I+ +
Sbjct: 14  IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73

Query: 261 NGMLLNGKKVYVGRFIPR 314
           +G  L  K + V +  P+
Sbjct: 74  HGRELGNKVISVNKAEPK 91


>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
           sativus] GI:7528270; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 497

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 51/118 (43%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           V + NL        +   F+    ++S ++  +  G   GYGFV F +   ANK++E+ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219

Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           G  L+  K+     + +        E+A +   ++V N  +      + + F+  G +
Sbjct: 220 GEYLHNHKI----LLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEV 273


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63  RKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAA 239
           RK     +F+ +LDK    + +   F   G +   ++ ++ +T  SKG  F+ F T E A
Sbjct: 209 RKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQA 268

Query: 240 NKSIEKVNGMLLNGKK 287
            ++++++   ++NGKK
Sbjct: 269 KRAVKELKSPMINGKK 284



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSI 251
           V  +FI  L  + + + + D    +G +   ++A++   A  K +GFV F+T EAA    
Sbjct: 390 VKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCA 449

Query: 252 EKVN 263
           + +N
Sbjct: 450 KFIN 453


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
           R   R   +QR+ S+R++    V++ ++D+++  + +   FS+ G ++ C++  D     
Sbjct: 112 RLPGRASKAQREDSIRRT----VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVL 167

Query: 198 KGYGFVHFETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKA 347
           + + FV F  ++ A  ++     M+       L  K   +     F+PR E E+E+  + 
Sbjct: 168 R-FAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT 226

Query: 348 KLFTNVYVKNFGED 389
              TNV  KN  ED
Sbjct: 227 IYCTNV-DKNATED 239


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIE 254
           G +++ NL  TI +  +   F   G ++  ++  D+ T  S+G+GFV   + E A ++++
Sbjct: 116 GRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175

Query: 255 KVNGMLLNGKKVYVG-RFIPR-KERE---KELGEKAKLFTN----VYVKNFGEDFSDEML 407
             N   + G+ V V    +PR  E E    ++ +  + + +    VY  N G + + + L
Sbjct: 176 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235

Query: 408 KDMF 419
           KD F
Sbjct: 236 KDAF 239



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           V+  NL   + ++ + D F     +L  KV  +  TG S+G+GF+ FE+ E    ++  +
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280

Query: 261 NGMLLNGKKVYVGRFIPRKEREK 329
           NG+ + G+ +   R     EREK
Sbjct: 281 NGVEVEGRAL---RLNLASEREK 300


>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
           protein similar to GB:L02953 from [Xenopus laevis]
           (Nucleic Acids Res. 21, 999-1006 (1993)); contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 369

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L   ++   + + F  +G+I+  ++  D  TG S+G+GFV F+TE++ ++     
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218

Query: 261 NGMLLNGKKVYVGRFIPRK 317
               L  K+V + R  P++
Sbjct: 219 KVHELGDKQVEIKRAEPKR 237


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 30/42 (71%)
 Frame = +3

Query: 171 VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           +   +T   KG+GF+ FE+E+ A K+++ +NG ++NG+ ++V
Sbjct: 98  IKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139


>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 347

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L      + +   F  +G I  C V  D+ TG +KG+GFV F+T + A +++++ 
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165

Query: 261 NGMLLN 278
              +LN
Sbjct: 166 KKRILN 171


>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 343

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L      + +   F  +G I  C V  D+ TG +KG+GFV F+T + A +++++ 
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165

Query: 261 NGMLLN 278
              +LN
Sbjct: 166 KKRILN 171


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           V++  +   +    +   FS +G I+   + +D+ TG SKG+ F+ +E + +   +++ +
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 261 NGMLLNGKKVYVGRFIPRKEREKE 332
           NG L+ G+ + V      K+ E+E
Sbjct: 98  NGALVLGRTIKVDHCGAYKKHEEE 121


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGN--VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-T 188
           R +A   W   DP+L +    +  +F  +L   +++  +   F+ F      KV +D+ T
Sbjct: 117 RKAAGQSWE--DPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 174

Query: 189 GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362
           G +KGYGFV F        +++++NG  +  + + + +   ++  ++E  E+ K  +N
Sbjct: 175 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSN 232


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L        M   F  FG I+   V  D+ TG SKGYGFV F+  EAA ++ + +
Sbjct: 24  IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83

Query: 261 NGML 272
           N ++
Sbjct: 84  NPVI 87


>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 451

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
           +F+  L       ++ D F  +G I  CK   D+ +G SKGYGF+ F++   A  ++   
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189

Query: 252 -EKVNGMLLNGKKVYVG--RFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFE 422
            +K+   +   +   +G  +  P     +    +  +   +YV N   D   + L + F 
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPE-NVQRKIYVSNVSADIDPQKLLEFFS 248

Query: 423 KYGRI 437
           ++G I
Sbjct: 249 RFGEI 253


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +++  L  T   + + + F  FG I+   V  D ET  S+GYGFV F+  E+A ++ +  
Sbjct: 15  IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74

Query: 261 N----GMLLNGKKVYVG 299
           N    G + N K  +VG
Sbjct: 75  NPTIEGRITNCKLAFVG 91


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  ++        F+ FG I    V  D  T   +G+GF+ +++EEA +K ++K 
Sbjct: 35  IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94

Query: 261 NGMLLNGKKVYVGRFIPR 314
               LNGK V V   +P+
Sbjct: 95  FHE-LNGKMVEVKLAVPK 111


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  ++        F+ FG I    V  D  T   +G+GF+ +++EEA +K ++K 
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167

Query: 261 NGMLLNGKKVYVGRFIPR 314
               LNGK V V   +P+
Sbjct: 168 FHE-LNGKMVEVKLAVPK 184


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  ++        F+ FG I    V  D  T   +G+GF+ +++EEA +K ++K 
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167

Query: 261 NGMLLNGKKVYVGRFIPR 314
               LNGK V V   +P+
Sbjct: 168 FHE-LNGKMVEVKLAVPK 184


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+ +L+K    K + + F  FG++    + +DE   S+G GFV + ++E A  +I+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272

Query: 264 G 266
           G
Sbjct: 273 G 273


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+ +L+K    K + + F  FG++    + +DE   S+G GFV + ++E A  +I+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272

Query: 264 G 266
           G
Sbjct: 273 G 273


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 132 DTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299
           D F+  G ++S ++         GYGFV F +   AN ++EK NG  L+  K+++G
Sbjct: 700 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLG 755


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           VF+  L        M   F  FG IL   +  D+ TG SKGYGFV F   ++A +++   
Sbjct: 19  VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78

Query: 261 NGMLLNGKK 287
           N  +++G+K
Sbjct: 79  N-PVIDGRK 86


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           VF+  L        M   F  FG IL   +  D+ TG SKGYGFV F   ++A +++   
Sbjct: 19  VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78

Query: 261 NGMLLNGKK 287
           N  +++G+K
Sbjct: 79  N-PVIDGRK 86


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           VF+  L        M   F  FG IL   +  D+ TG SKGYGFV F   ++A +++   
Sbjct: 19  VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78

Query: 261 NGMLLNGKK 287
           N  +++G+K
Sbjct: 79  N-PVIDGRK 86


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+  L K +    +   FS +G I   ++ +     SKG  F+ +ET+E A  ++E +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167

Query: 264 G 266
           G
Sbjct: 168 G 168



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFE 224
           N+FI N+ +   ++ +   F +FG +LS KV  D+ TG SK +G + F+
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397


>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) (2 copies)
          Length = 327

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
 Frame = +3

Query: 42  SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHF 221
           +QR+ S+R++    V++ ++D+++  + +   FS  G ++ C++  D     + + FV F
Sbjct: 133 AQREDSIRRT----VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEF 187

Query: 222 ETEEAANKSIEKVNGML-------LNGKKVYVG---RFIPRKEREKELGEKAKLFTNVYV 371
             ++ A++++     ML       L  K   +     F+PR E E+E+  +      +Y 
Sbjct: 188 ADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTR-----TIYC 242

Query: 372 KNFGEDFSDEMLKDMFEK-YGRIT 440
            N  +  S   +++ FE   G +T
Sbjct: 243 TNIDKKVSQADVRNFFESACGEVT 266


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  ++        F  FG      V  D  T   +G+GF+ +++EEA  K + K 
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169

Query: 261 NGMLLNGKKVYVGRFIPRK 317
               LNGK V V R +P++
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L  ++        F  FG      V  D  T   +G+GF+ +++EEA  K + K 
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169

Query: 261 NGMLLNGKKVYVGRFIPRK 317
               LNGK V V R +P++
Sbjct: 170 FHE-LNGKMVEVKRAVPKE 187


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++++ L+K      + + FS +G I    +A D+    +GY FV F  +E A  +I+ +N
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268

Query: 264 GM--LLNGKKVYVGRFI-PRKEREKELGEKAKLF 356
           G+  +    +  + RF  P+K R   LGE+   F
Sbjct: 269 GLFTIRGSDQPLIVRFADPKKPR---LGEQRSTF 299


>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 285

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
           VF+  L     ++ +   F  +G IL   V  D+ TG SKGYGFV F   EAA ++
Sbjct: 26  VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81


>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
           RNA-binding protein GB:CAB40027 GI:4539439 from
           [Arabidopsis thaliana]
          Length = 358

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
           R +AR   +QR+  +R++    V++ +LD+ +  + +   F + G ++ C++  D     
Sbjct: 157 RMNARTSMAQREDVIRRT----VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVL 212

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344
           + + F+ F  EE A  ++  ++G +L    V V             F+PR E E+E+  +
Sbjct: 213 R-FAFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCAR 270

Query: 345 AKLFTNV 365
               TN+
Sbjct: 271 TIYCTNI 277


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +3

Query: 90  IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNG 266
           ++ LD+  D + +   FS    I   ++ +D+ T  S+G+ FVHF + E A K++E  N 
Sbjct: 462 VRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNR 521

Query: 267 MLL--NGK 284
             L  NGK
Sbjct: 522 TALERNGK 529


>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           is the location of EST 197B1T7 , gb|AA597386
          Length = 274

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
           VF+  L     ++ +   F  +G+IL   V  D+ TG SKGYGFV F   EAA ++
Sbjct: 26  VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEK- 257
           +++  L      + +   F  FG I+  KV  D  T  SKG+GFV F   E+A ++ E  
Sbjct: 11  IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70

Query: 258 ---VNGMLLNGKKVYVG 299
              ++G  +N K  Y+G
Sbjct: 71  NHTIDGRTVNCKLAYLG 87


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
           +F+  L      + + + F  +G I  CK   D+ +G SKGYGF+ +++   A  ++   
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201

Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
            +K+        L +   V+ G  I                T   +YV N G +   + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261

Query: 408 KDMFEKYGRI 437
              F K+G I
Sbjct: 262 LMFFSKFGEI 271


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
           +F+  L      + + + F  +G I  CK   D+ +G SKGYGF+ +++   A  ++   
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201

Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
            +K+        L +   V+ G  I                T   +YV N G +   + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261

Query: 408 KDMFEKYGRI 437
              F K+G I
Sbjct: 262 LMFFSKFGEI 271


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSI--- 251
           +F+  L      + + + F  +G I  CK   D+ +G SKGYGF+ +++   A  ++   
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201

Query: 252 -EKVNG-----MLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKNFGEDFSDEML 407
            +K+        L +   V+ G  I                T   +YV N G +   + L
Sbjct: 202 QKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKL 261

Query: 408 KDMFEKYGRI 437
              F K+G I
Sbjct: 262 LMFFSKFGEI 271


>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
           putative BcDNA.LD24793, Drosophila melanogaster,
           EMBL:AF172637
          Length = 292

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++I NLD  + N+ + + FS  G++    +  D +G SKG   V F     A  ++++ N
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYN 169

Query: 264 GMLLNGK 284
            + L+GK
Sbjct: 170 NVQLDGK 176


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           VF+ N+      + + +     G ++S ++  D ETG  KGYGF  ++ EE A  +   +
Sbjct: 11  VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query: 261 NGMLLNGKKVYV 296
               +NG+++ V
Sbjct: 71  QSYEINGRQLRV 82


>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 347

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
           VF+  L      + M   F  FG IL   V  D+ +G SKGYGFV F   EAA  +
Sbjct: 15  VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 242

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
           VF+  L      + M   F  FG IL   V  D+ +G SKGYGFV F   EAA  +
Sbjct: 15  VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 249

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKS 248
           VF+  L      + M   F  FG IL   V  D+ +G SKGYGFV F   EAA  +
Sbjct: 15  VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At4g10610.1 68417.m01735 RNA-binding protein, putative
          Length = 336

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
           R + R   +QR+  +R++    V++ ++D+ +  + +   F  FG ++ C++  D     
Sbjct: 134 RMNPRTSLAQREEIIRRT----VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVL 189

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELGEK 344
           + + F+ F T+E   ++   ++G +L    V V             F+PR E E+E+  +
Sbjct: 190 R-FAFIEF-TDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCAR 247

Query: 345 AKLFTNV 365
               TN+
Sbjct: 248 TIYCTNI 254


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCK-VAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +FI+NL   +  + +   F+ FG + S   V    T   +G  FV F+T +A+  +I   
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622

Query: 261 N-----GMLLNGKKVYVGRFIPRKERE----KELGEKAKLFTNVYVKNFGEDFSD 398
           +     G+LL G+++ V R + +K  +    K+  EK     N+Y+   G+   D
Sbjct: 623 DTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNLYLAKEGQILDD 677



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           + I+NL        +   FSA G +    + ++ ETG  KG+ FV F  ++ A  +I+K 
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 261 NGMLLNGKKVYVGRFIPR 314
           NG +   + + V   +P+
Sbjct: 393 NGHMFGKRPIAVDWAVPK 410


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKV 260
           +++  L   ++   ++  F  FG+I   K   D+     + +GFV F   E A+ +++ +
Sbjct: 15  LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338
           +G  L G+ + V   +P K +  E G
Sbjct: 75  DGAELYGRVLTVNYALPEKIKGGEQG 100


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
           +  V++ NLD  +  + + D F +FG I S  VA+       GY F+ FE    A  +I 
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVAR----RPPGYAFLDFEDSRDARDAIR 56

Query: 255 KVNGMLLNGKKV 290
           +V+G   NG +V
Sbjct: 57  EVDGK--NGWRV 66


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248
           VF+  L       ++ + F  FG+I+   V  D++ G SKGYGFV F   EAA K+
Sbjct: 9   VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKS 248
           VF+  L       ++ + F  FG+I+   V  D++ G SKGYGFV F   EAA K+
Sbjct: 9   VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +3

Query: 90  IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266
           + +L + ++   + + F  FG ++  ++A D      +G+G+V F+    A K+   ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161

Query: 267 MLLNGKKVYVGRFIPRKER 323
             ++GK V     +P +++
Sbjct: 162 AQIDGKVVKATFTLPPRQK 180


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +3

Query: 90  IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDET-GASKGYGFVHFETEEAANKSIEKVNG 266
           + +L + ++   + + F  FG ++  ++A D      +G+G+V F+    A K+   ++G
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161

Query: 267 MLLNGKKVYVGRFIPRKER 323
             ++GK V     +P +++
Sbjct: 162 AQIDGKVVKATFTLPPRQK 180


>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
           protein RBP37, Arabidopsis thaliana, PIR:T04196
          Length = 353

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
 Frame = +3

Query: 18  RNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGAS 197
           R + R   +Q+D  +R++    V++ ++D+ +  + +   F   G ++ C+V  D     
Sbjct: 153 RMNKRTSLAQKDDVIRRT----VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVL 208

Query: 198 KGYGFVHFETEEAANKSIEKVNGMLLN--GKKVYVGR---------FIPRKEREKELGEK 344
           + + F+ F  EE A  ++  ++G +L     KV   +         F+PR E E+E+  +
Sbjct: 209 R-FAFIEFTNEEGARAALS-MSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMCVR 266

Query: 345 AKLFTNV 365
               TN+
Sbjct: 267 TVYCTNI 273


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 108 TIDNKAMYDTFSAFGNILSCKVAQDETGAS-KGYGFVHFETEEAANKSIEKVNGMLLNGK 284
           T++N  M       G++ SC  A+D T    KG+GF  FE+ E   ++I  +    ++G+
Sbjct: 213 TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQ 272

Query: 285 KVYV 296
           ++ V
Sbjct: 273 ELLV 276


>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
           protein similar to SP|P52298 20 kDa nuclear cap binding
           protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1) {Homo sapiens}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 124

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++++NL   I ++ MYD F  +G I   ++  D+  A+KG  FV +E    A  +++ ++
Sbjct: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK--ATKGTAFVVYEDIYDAKNAVDHLS 78

Query: 264 G 266
           G
Sbjct: 79  G 79


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++I NLD  + N+ + + F+  G +    V  D +G SKG   V +     A  +++K N
Sbjct: 88  LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 147

Query: 264 GMLLNGKKVYV 296
            + L+GK + +
Sbjct: 148 DVQLDGKPMKI 158


>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
           putative
          Length = 178

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++I NLD  + N+ + + F+  G +    V  D +G SKG   V +     A  +++K N
Sbjct: 24  LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 83

Query: 264 GMLLNGKKVYV 296
            + L+GK + +
Sbjct: 84  DVQLDGKPMKI 94


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           ++I NLD  + N+ + + F+  G +    V  D +G SKG   V +     A  +++K N
Sbjct: 90  LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYN 149

Query: 264 GMLLNGKKVYV 296
            + L+GK + +
Sbjct: 150 DVQLDGKPMKI 160


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 138 FSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLL 275
           FS FG +   +VA+++ TG SK +GF+ FE  E A  +   +N  LL
Sbjct: 80  FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLL 126


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           ++++  L   +  + + D F+  G +    +  D  T  S+G+GF+  ++   AN+ I  
Sbjct: 46  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105

Query: 258 VNGMLLNGKKVYVGRFI 308
           ++  +L G+ + V +F+
Sbjct: 106 LDHSVLQGRVITVEKFL 122


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +3

Query: 75  VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIE 254
           +  V++ NLD  +  + + D F AFG + S  VA+       GY F+ FE    A  +I 
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVAR----RPPGYAFLDFEDPRDARDAIR 56

Query: 255 KVNGMLLNGKKV 290
            ++G   NG +V
Sbjct: 57  ALDGK--NGWRV 66


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSA-FGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIE 254
           N+F+ NL      K + + F A  GN++S +V   E    S GYGFV F+T++ A  ++ 
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249

Query: 255 KVNGMLLNGKKVYVGR 302
           +  G    G+ + + +
Sbjct: 250 EFQGKDFLGRPIRLAK 265


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +3

Query: 51  DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230
           +PS +    G + + NLD +I N  ++  F A G I   +    ET   + + FV F   
Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299

Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
             A  +++ +N   + GK++ V
Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +3

Query: 51  DPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETE 230
           +PS +    G + + NLD +I N  ++  F A G I   +    ET   + + FV F   
Sbjct: 244 NPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIR----ETPHKRHHKFVEFYDV 299

Query: 231 EAANKSIEKVNGMLLNGKKVYV 296
             A  +++ +N   + GK++ V
Sbjct: 300 RGAEAALKALNRCEIAGKRIKV 321


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = +3

Query: 72  GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
           G   +F+  L        + +   +FG +    + +D ETG SKGY F  ++     + +
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432

Query: 249 IEKVNGMLLNGKKVYVGRFI-----PRKEREKEL 335
              +NG+ +  K + V R I     P+ E+E+ L
Sbjct: 433 CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVL 466


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEK 257
           ++++  L   +  + + D F+  G +    +  D  T  S+G+GF+  ++   AN+ I  
Sbjct: 76  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135

Query: 258 VNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT 359
           ++  +L G+ + V +   R+ R    G+   L T
Sbjct: 136 LDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRT 169


>At5g65260.1 68418.m08209 polyadenylate-binding protein family
           protein / PABP family protein low similarity to
           poly(A)-binding protein II [Drosophila melanogaster]
           GI:6007612; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain
          Length = 220

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +VF+ N+D     + +   F   G +    +  D+ G  KG+ +V F   EA  ++++ +
Sbjct: 93  SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-L 151

Query: 261 NGMLLNGKKVYV 296
           N   L+G+++ V
Sbjct: 152 NESELHGRQLKV 163


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           +F+ NL        +   F     ++  ++  +  G   G GFV F +   A K+++K+N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550

Query: 264 GMLLNGKKVYV 296
           G  L  +++++
Sbjct: 551 GENLRSREIFL 561


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 24/112 (21%), Positives = 48/112 (42%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           + +PS +    G + I N+D T+ N  +   F A+G I   +    ET   + + F+ + 
Sbjct: 259 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 314

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
               A  +++ +N   + GK + +    P   R   +  +++      V NF
Sbjct: 315 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 366


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 24/112 (21%), Positives = 48/112 (42%)
 Frame = +3

Query: 45  QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 224
           + +PS +    G + I N+D T+ N  +   F A+G I   +    ET   + + F+ + 
Sbjct: 272 KENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR----ETPNRRFHRFIEYY 327

Query: 225 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 380
               A  +++ +N   + GK + +    P   R   +  +++      V NF
Sbjct: 328 DVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTNF 379


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
           G++ I NL+ T+ +  +   F  +G +   +    ET   +   FV F     A K++  
Sbjct: 183 GSLVIMNLEPTVSSSTLRHIFQVYGEVKQVR----ETPCKREQRFVEFFDVRDAAKALRV 238

Query: 258 VNGMLLNGKKVYV 296
           +NG +++GK + +
Sbjct: 239 MNGKVISGKPMVI 251


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 260
           +++ NL   +    +   F AFG +   ++  D ETG  KG+GF+ F   E +     K 
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHS-----KA 321

Query: 261 NGMLLNGKKVYVGRFI 308
             + LNGK    GR I
Sbjct: 322 AQIALNGKLEIAGRTI 337



 Score = 33.9 bits (74), Expect = 0.051
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGA-SKGYGFVHFETEEAANKSIEKV 260
           VF   +      + +Y+ FS  G +   ++  D     SKG G++ F    +   +I  +
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-L 228

Query: 261 NGMLLNGKKVYVGRFIPRKEREKE----LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY 428
           +G L  G+ V V      K   +     +G        +YV N   + S+  L+ +FE +
Sbjct: 229 SGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAF 288

Query: 429 GRI 437
           G +
Sbjct: 289 GPV 291


>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221
           +FI+ L      + +   FS++G++    V  D+ TG SKGYGFV F
Sbjct: 77  LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123


>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF 221
           +FI+ L      + +   FS++G++    V  D+ TG SKGYGFV F
Sbjct: 77  LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 23/104 (22%), Positives = 46/104 (44%)
 Frame = +3

Query: 12  GCRNSARGMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG 191
           G +   R   S+ +PS + +  G + + NLD +I N+ +     ++G +   +     T 
Sbjct: 280 GTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIR----RTM 335

Query: 192 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKER 323
                 ++ F    AA  ++  +NG+ + GKK+ +    P   R
Sbjct: 336 HDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTR 379


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 48  RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFG---NILSCKVAQDETGASKGYGFVH 218
           R+P       G +F+ NL   I      + F  FG   N++  K    E   + G+GF+ 
Sbjct: 155 RNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIK-GHHEVEKNAGFGFII 213

Query: 219 FETEEAANKSIEKVNGMLLNGK 284
           +  E++A K++E  +G+  +G+
Sbjct: 214 YAAEKSAMKAVE-FDGVEFHGR 234


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 72  GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
           G   +F+  L        + +   +FG +    + +D ETG SKGY F  ++     + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416

Query: 249 IEKVNGMLLNGKKVYVGR 302
              +NG+ +  K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 72  GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
           G   +F+  L        + +   +FG +    + +D ETG SKGY F  ++     + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416

Query: 249 IEKVNGMLLNGKKVYVGR 302
              +NG+ +  K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 72  GVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
           G   +F+  L        + +   +FG +    + +D ETG SKGY F  ++     + +
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416

Query: 249 IEKVNGMLLNGKKVYVGR 302
              +NG+ +  K + V R
Sbjct: 417 CAALNGIKMGDKTLTVRR 434


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           VF+ N +       +   F  +G +       D      GY FV+FE E  A  +I K++
Sbjct: 4   VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKSGYAFVYFEDERDAEDAIRKLD 56

Query: 264 GMLLNGKKVYVGRFIPRKEREKELGE-KA----KLFTNVYVKNFGEDFSDEM-LKDMFEK 425
                 +K  +     + ER +  G+ KA    K    ++V NF    + E  ++  FE 
Sbjct: 57  NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEP 116

Query: 426 YGRITS 443
           YG++T+
Sbjct: 117 YGKVTN 122


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           +F+  L     +  +    S +G +   K   +  +G SKGY  V F    AA    E +
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263

Query: 261 NGMLLNGKKVYVGRFIPRKEREKELG 338
           NG + NGK   V    P  E  K++G
Sbjct: 264 NGFIFNGKACVVAFASP--ETLKQMG 287


>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
           PABP, putative contains similarity to poly(A)-binding
           protein II [Mus musculus] GI:2351846; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 227

 Score = 33.9 bits (74), Expect = 0.051
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           ++++ N+D     + +   F + G +    +  D+ G  KG+ +V F   EA   S+  +
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-IL 162

Query: 261 NGMLLNGKKVYV 296
           N   L+G+++ V
Sbjct: 163 NESELHGRQIKV 174


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 33.9 bits (74), Expect = 0.051
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +3

Query: 126 MYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
           ++  F  +G +++ KV ++ +   KG  +VH+ + E+A  + + +NG    GK+V
Sbjct: 311 VHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQV 365


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 144 AFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
           + G +   ++ ++ ++G  KGY FV F +++ A ++I+ +N     GK++
Sbjct: 114 SIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 189 GASKGYGFVHFETEEAANKSIEKVNG--MLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 362
           G ++G+ F+ +     A  S +K++     L+     V     R     +    A     
Sbjct: 212 GRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGD--SSASQVKA 269

Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437
           +Y+KN   D + E LK +FE +G+I
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKI 294


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +3

Query: 78  GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK 257
           G + I NLD  + +  +   F  +G I   +    ET   K   FV F     A ++ ++
Sbjct: 213 GTLVIFNLDPEVSSITLRQIFQVYGPIKELR----ETPYKKHQRFVEFYDVRDAARAFDR 268

Query: 258 VNGMLLNGKKVYV 296
           +NG  + GK+V +
Sbjct: 269 MNGKEIGGKQVVI 281


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKV 260
           + +  + +    + + + F  FG I +  +  D  +G  KGY  + +E +E A  +I  +
Sbjct: 97  ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156

Query: 261 NGMLLNGKKVYV 296
           NG  L  + V V
Sbjct: 157 NGAELLTQNVSV 168


>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
 Frame = +3

Query: 54  PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203
           P +R   +  V ++NL +   N+ + + F   G+I S  +       + E G  K     
Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244

Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353
              + FV +ET EAA K+   +N      NG +V +     G+F  R+   +E+ ++   
Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304

Query: 354 FTNVYVKNFGE 386
              V+ +  GE
Sbjct: 305 TGRVHDQTGGE 315


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
 Frame = +3

Query: 54  PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVA------QDETGASKG---- 203
           P +R   +  V ++NL +   N+ + + F   G+I S  +       + E G  K     
Sbjct: 185 PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIR 244

Query: 204 ---YGFVHFETEEAANKSIEKVNGM--LLNGKKVYV-----GRFIPRKEREKELGEKAKL 353
              + FV +ET EAA K+   +N      NG +V +     G+F  R+   +E+ ++   
Sbjct: 245 TRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKLLEQAAGKFAQRRPARREVDKEKDT 304

Query: 354 FTNVYVKNFGE 386
              V+ +  GE
Sbjct: 305 TGRVHDQTGGE 315


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +V++ N+D     + +   F   G +    +  D+ G  KG+ +V F   EA  ++++ +
Sbjct: 90  SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148

Query: 261 NGMLLNGKKVYV 296
           N   L+G+++ V
Sbjct: 149 NESELHGRQLKV 160


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +V++ N+D     + +   F   G +    +  D+ G  KG+ +V F   EA  ++++ +
Sbjct: 90  SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-L 148

Query: 261 NGMLLNGKKVYV 296
           N   L+G+++ V
Sbjct: 149 NESELHGRQLKV 160


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = +3

Query: 75  VGNVFIKNLD--KTIDNKAMYDTFSAFGNILSCKVAQDE-TGASKGYGFVHF----ETEE 233
           V  +F+ NL    T D+   Y  F  FG ++   V  +   G SKGYGF+ F     T  
Sbjct: 11  VTKIFVGNLTWRTTADDLRRY--FEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68

Query: 234 AANKSIEKVNGMLLNGKKVYVGRF 305
           A   S   ++G   N      G F
Sbjct: 69  ALQNSKPIIDGRTTNCNLASAGSF 92


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           V++ NLD  +  + + D F AFG + +  VA+       GY F+ F+ E  A  +I  ++
Sbjct: 4   VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 263
           V++ NLD  +  + + D F AFG + +  VA+       GY F+ F+ E  A  +I  ++
Sbjct: 4   VYVGNLDPRVTERELEDEFKAFGVLRNVWVAR----RPPGYAFLEFDDERDALDAISALD 59


>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 391

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248
           +V+++NL   I    + + F  FG I    +  +  +D  G    Y FV FE   +   +
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 315

Query: 249 IEKVNGMLLNGKKVYV 296
           I K + + L G++VY+
Sbjct: 316 I-KASPIYLGGRQVYI 330


>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 450

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNI----LSCKVAQDETGASKGYGFVHFETEEAANKS 248
           +V+++NL   I    + + F  FG I    +  +  +D  G    Y FV FE   +   +
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVC--YAFVEFEDMTSVENA 374

Query: 249 IEKVNGMLLNGKKVYV 296
           I K + + L G++VY+
Sbjct: 375 I-KASPIYLGGRQVYI 389


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +3

Query: 84  VFIKNLDKTIDNKAMYDTFSAFGN----ILSCKVAQD-ETGASKGYGFVHFETEEAANKS 248
           VF+ NL   + ++ +Y  F+   N    I + +V +D      KG  +V F+T EAAN  
Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLV 344

Query: 249 IEKVNGMLLNGKKVYVGRFIP 311
           ++K   + L  +++ + R  P
Sbjct: 345 LKK-GYLKLRERELRISRVKP 364


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 123 AMYDTFSAFGNILSCKVA-QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVG 299
           A+++ FS+ G +    V     TGAS GY F+  + E    K +  +NG  L G+K+ V 
Sbjct: 136 ALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMKNE---TKGL-TLNGSHLGGRKIDVM 191

Query: 300 RFIPRKE 320
             I R+E
Sbjct: 192 FAIDREE 198


>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
           Sex-lethal interactor [Drosophila melanogaster]
           GI:6049274; contains Pfam profile PF04801: Sin-like
           protein conserved region
          Length = 689

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 306 IPRKER-EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 437
           +P KER +K L E + L     +K++  +FSDE      ++YGR+
Sbjct: 338 LPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRL 382


>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profile: PF00076 RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain); similar to
           ras-GTPase-activating protein (GAP<120>)
           SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
          Length = 488

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGY--GFVHFETEEAANKSIE 254
           ++++K L        + + F  FG I +  +   +  + KG+  GFV FE+  +   +IE
Sbjct: 313 SIYLKGLPLDATPALLENEFQKFGLIRTNGI---QVRSQKGFCFGFVEFESASSMQSAIE 369

Query: 255 KVNGMLLNGKKVYV 296
             + ++LNG KV V
Sbjct: 370 -ASPVMLNGHKVVV 382


>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 180

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 363 VYVKNFGEDFSDEMLKDMFEKYGRI 437
           +Y+KN   D + E LK +FE +G+I
Sbjct: 36  LYIKNLPRDITQERLKALFEHHGKI 60


>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial (PDHE1-A) identical to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}
          Length = 389

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 315 KEREKELGEKAKLFTNVYVKNFGED 389
           K ++  + E ++LFTNVYVK FG +
Sbjct: 351 KAKDCPMPEPSELFTNVYVKGFGTE 375


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKVN 263
           F  +L +    K +   FS  G +    V  D ETGAS+G+ ++  +     +++++ ++
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI--DLTSGFDEALQ-LS 542

Query: 264 GMLLNGKKVYVGRFIPRKEREKELGEKA 347
           G  + G  ++V    PR   E     +A
Sbjct: 543 GSEIGGGNIHVEESRPRDSDEGRSSNRA 570


>At2g15500.1 68415.m01774 hypothetical protein 
          Length = 132

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 249 IEKVNGMLLNGKKVYVGRFIPRKE 320
           + K+ GMLLN K+VYVG F+  K+
Sbjct: 1   MSKLIGMLLNDKQVYVGPFLRGKK 24


>At3g12930.1 68416.m01611 expressed protein contains Pfam domain
           PF02410: Domain of unknown function DUF143
          Length = 238

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 366 YVKNFGEDFSDEMLKDMFEKYGRI 437
           ++ N  ED +DEM  D+F KYG++
Sbjct: 78  FLSNVSED-TDEMFDDLFNKYGKV 100


>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKG-YGFVHFETEEA 236
           ++F+ NL      + +Y+TF +FG I    +        K   GFV FE  EA
Sbjct: 276 SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328


>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 505

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNG 266
           +DE   S+G GFV + ++E A  +I+ +NG
Sbjct: 2   RDEYRQSRGCGFVKYSSKETAMAAIDGLNG 31


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 360 NVYVKNFGEDFSDEMLKDMFEKYGRI 437
           ++YV N   D  +  ++D+F KYGRI
Sbjct: 8   SIYVGNLPGDIREHEIEDIFYKYGRI 33


>At3g32050.1 68416.m04075 hypothetical protein
          Length = 175

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 162 SCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 290
           S  VA     AS  Y  ++  T+E   KS + + GMLL  K V
Sbjct: 47  SIPVADPTVDASPNYEKMYLATQEKLQKSDQVIEGMLLKFKDV 89


>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
           protein similar to SP|P42731 Polyadenylate-binding
           protein 2 (Poly(A) binding protein 2) (PABP 2)
           {Arabidopsis thaliana}; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 423

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 180 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           + TG   G GFV F + + A  ++EK  G  L   ++++
Sbjct: 217 NHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFL 255


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 81  NVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKV 260
           +V++ N D    +  +   FS FG +              GY FV+FE E  A  +I + 
Sbjct: 3   HVYVGNFDYDTRHSDLERLFSKFGRV-------KRVDMKSGYAFVYFEDERDAEDAIRRT 55

Query: 261 N 263
           +
Sbjct: 56  D 56


>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 809

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 207 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 314
           GFV FE  E     +E ++G  +N   + +   +PR
Sbjct: 209 GFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPR 244


>At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2)
           identical to 2-isopropylmalate synthase (IMS2)
           [Arabidopsis thaliana] GI:12330689
          Length = 503

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 369 VKNFGEDFSDEMLKDMFEKYGRITSHK 449
           +K  G + SDE   D+F +Y  +T  K
Sbjct: 436 LKELGYEISDEKFNDIFSRYRELTKDK 462


>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 553

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 334 NSFSRSLRGMNLPTYTFFPFSNIPLTFSIDLL 239
           N+F  SLR +N  TY     +N+P+T   DLL
Sbjct: 324 NTFVNSLRSLNSKTYP----ANVPITVDHDLL 351


>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
           similarity to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 598

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 87  FIKNLDKTIDNKAMYDT--FSAFGNILSCKVAQDETGASK 200
           +I  +   I N+   DT  FSA G ILS ++A+ E G +K
Sbjct: 198 YIHGIGCLIWNQDFMDTVQFSAGGEILSIRLARSELGGNK 237


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 177 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 332
           +DE  +SK YG+ +       +  +E +   L NG    +   IPR E+ K+
Sbjct: 176 EDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNG---VLNLVIPRTEKPKK 224


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 147 FGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 296
           +G +   K   ++ +G SKGY  V F    AA+   + +NG   NG+   V
Sbjct: 257 YGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVV 307


>At4g16295.1 68417.m02472 self-incompatibility protein-related
           similar to self-incompatibility [Papaver nudicaule]
           GI:3097262
          Length = 151

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 270 LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGED 389
           ++NG       FI  K +E +LGE    F N +  NFGE+
Sbjct: 45  VVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGEN 84


>At3g43860.1 68416.m04692 glycosyl hydrolase family 9 protein
           similar to cellulase GI:575404 from [Sambucus nigra].
          Length = 486

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 SFVKVFNKNIPNSRLAQRRISLGP 39
           SFVK +NKN+PN+      I  GP
Sbjct: 427 SFVKWYNKNVPNANELTGAILGGP 450


>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain
          Length = 462

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 439 VMRPYFSNISFNISSEKS 386
           V+ PY  +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329


>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain
          Length = 486

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 439 VMRPYFSNISFNISSEKS 386
           V+ PY  +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329


>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain
          Length = 486

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 439 VMRPYFSNISFNISSEKS 386
           V+ PY  +IS+NIS EKS
Sbjct: 312 VLGPYVPHISYNISEEKS 329


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
           YGF H ET    N + E  +G+L++ +K +
Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347


>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 580

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
           YGF H ET    N + E  +G+L++ +K +
Sbjct: 319 YGFRHAETSVRINHNSENQSGLLIDWEKEF 348


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 204 YGFVHFETEEAANKSIEKVNGMLLNGKKVY 293
           YGF H ET    N + E  +G+L++ +K +
Sbjct: 318 YGFRHAETSVRINHNSENQSGLLIDWEKEF 347


>At1g72580.1 68414.m08393 hypothetical protein
          Length = 98

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 237 ANKSIEKVNGM-----LLNGKKVYVGRFIPRKEREKELGEKAKLFTNV 365
           +++ +EK N M     LLN     +G+ +P KE E+EL E    F N+
Sbjct: 50  SDEEMEKFNQMMNCVKLLNNCLTKIGQSLPLKEGERELVEVEVDFKNI 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,996
Number of Sequences: 28952
Number of extensions: 189309
Number of successful extensions: 930
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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