Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D02
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    24   0.49 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   0.65 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   0.65 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   8.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   8.0  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 13  RHEGRMPLTFRPLSKRYD*RSAVRGQVYSLAPNAEFDT*QNSTFYFLKRKVPYRTYVPAY 192
           RH+G + LT   L       S+V     +LAPN +F T +   FY  KR      Y    
Sbjct: 201 RHDGLL-LTMSVLPNV---NSSVYYDPRALAPNLDFITLEAFDFYTPKRNPKEADYPAPL 256

Query: 193 YE 198
           YE
Sbjct: 257 YE 258


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 366 LAVVVGKVSGNPSTNHKINTAIPSHTLRVP---LRRRPKTCLVPQMGRL 229
           L+ VV +++GN   +    T+I   T RVP       P + LVP   R+
Sbjct: 9   LSGVVSQINGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERI 57


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 366 LAVVVGKVSGNPSTNHKINTAIPSHTLRVP---LRRRPKTCLVPQMGRL 229
           L+ VV +++GN   +    T+I   T RVP       P + LVP   R+
Sbjct: 9   LSGVVSQINGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERI 57


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 57   FREWAKSEGHSPLVPNS 7
            + EW  +E H P+ P S
Sbjct: 1366 YPEWQPTEWHPPIPPTS 1382


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 175 TYVPAYYEQDCEC 213
           TY P+YY QD  C
Sbjct: 360 TY-PSYYNQDVSC 371


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 232 PSHLGNEASLGSPSEGDP 285
           P H G   S G P +G P
Sbjct: 62  PHHYGGPPSGGQPPQGMP 79


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 96  LPGPQCGI*HLAKFYILFLKKKGSL 170
           +PGP C    L +  +L+L   GS+
Sbjct: 332 VPGPCCVPTQLGQMSMLYLGSDGSV 356


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 226 NAATSIHNPAHNTQVHRSCKEPFFLRNKM*N 134
           N    IH       +HR   E +F  N + N
Sbjct: 76  NTIEMIHRGTFQGDIHRDLTEVYFSFNSVRN 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,651
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)