Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D02
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 29 0.21
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 3.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 4.5
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 4.5
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.5
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.5
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 5.9
SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces pombe... 25 5.9
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.9
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 5.9
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 7.8
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 24 7.8
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 24 7.8
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 7.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 24 7.8
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 24 7.8
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 29.5 bits (63), Expect = 0.21
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 342 SGNPSTNHKINTAIPSHTLRVPLRRRPKTCLVPQMGRLLTPPP 214
SG TN + P T R + RRP + + Q G L+ PP
Sbjct: 27 SGVNGTNGGMKQVSPVSTARTSIARRPPSTVGSQTGSLVNAPP 69
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 274 QTATQDLPRSPNGKALNAATSIHNP 200
Q++ +P SPN +A AT + NP
Sbjct: 358 QSSPTGIPASPNVRATQIATQVPNP 382
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 300 PSHTLRVPLRRRPKTCLVPQMGRLLTPPPAFTI 202
P+H + P RP++ PQM PPP ++
Sbjct: 1683 PAHPVSTP-PVRPQSAAPPQMSAPTPPPPPMSV 1714
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 77 PSEGRYTPWPPMRNLTPSK 133
PS RYTP R +TP K
Sbjct: 30 PSRSRYTPRSAQRTVTPHK 48
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 307 GNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPF 158
GN+ S +P PP T P S + NA+T +P ++ + + K P+
Sbjct: 64 GNAYSQAPYPPARPTSQRPNS--WQPGNASTMYASPPPSSN-YNTAKPPY 110
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 329 LPITRSIRQFPVTLSGSPSDGDPRLASFPKWE 234
LP T + Q T S PS+ D + + PK E
Sbjct: 259 LPKTSDLEQQRGTSSSQPSENDANITALPKPE 290
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 5.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 360 VVVGKVSGNPSTNHKINTAIPSH 292
+ +G GNP +N+ N+ PSH
Sbjct: 794 IPLGHALGNPESNNSSNSFKPSH 816
>SPAC1250.07 |sfc7||TFIIIC subunit Sfc7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 5.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 232 PSHLGNEASLGSPSEGDPESVTGN 303
P + +S+ SP++G+PE+++ N
Sbjct: 97 PKNPSPSSSIHSPTQGEPENISEN 120
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 27 NAPHFSPTLEKVRLKVSRPRAGILP 101
+APHF L K+ L S R G+ P
Sbjct: 193 HAPHFHQALLKLELAPSALRFGVFP 217
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 344 CQGTHLPITRSIRQFPVTLSGS 279
C G H+P T I+ F VT + S
Sbjct: 229 CTGPHVPHTGRIKSFAVTKNSS 250
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = -2
Query: 298 QSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRNKM*NFARCQ 119
Q H+ P+ T+D P+ P GK + + + PF + + N++R
Sbjct: 178 QIHTIHLPRPKTEDKPKDPEGKLDTKNPVVSKVTWSPSLSEPPLPPFAIGDLRANWSRRL 237
Query: 118 IPHWG 104
WG
Sbjct: 238 DRIWG 242
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 234 FPFGERGKSWVAV*GGPG 287
F GE GKSW+++ G G
Sbjct: 226 FVIGETGKSWISLPKGKG 243
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 234 FPFGERGKSWVAV*GGPG 287
F GE GKSW+++ G G
Sbjct: 226 FVIGEAGKSWISLPKGKG 243
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 331 IYQSQDQYGNSQSHSPGPPQTATQDLPRSPN 239
+YQ+Q Y + QSH P +++ P P+
Sbjct: 285 MYQNQQSYLSPQSHYENPLSISSRPSPCCPS 315
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 342 SGNPSTNHKINTAIPSHTLRVPLRRRPKT 256
S +P+T + T++PS R P+ P T
Sbjct: 354 SNSPATLNSYTTSVPSGMSRHPMLMNPST 382
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 234 FPFGERGKSWVAV*GGPG 287
F GE GKSW+++ G G
Sbjct: 226 FVIGETGKSWISLPKGKG 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,970
Number of Sequences: 5004
Number of extensions: 39556
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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