Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D02
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 29 1.4
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265... 28 2.4
10_08_0271 - 16382655-16384451 28 3.2
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 28 3.2
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 3.2
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 28 3.2
03_05_0277 - 22651630-22651757,22652038-22652725 27 4.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 27 5.6
05_07_0100 + 27679280-27680320 27 5.6
05_03_0177 - 9245131-9245793 27 5.6
04_01_0318 - 4279228-4279279,4279670-4279935,4280208-4280322,428... 27 5.6
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 27 5.6
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 7.5
06_03_0433 - 20718726-20719895 26 9.9
06_01_1015 - 7940366-7941148 26 9.9
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 26 9.9
04_01_0322 - 4298733-4299524 26 9.9
>01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 10 IRHEGRMPLTFRPLSKRYD*RSAVRGQVYSLAPNAEFD 123
IR G P T PLSK SAV ++ L PN+E+D
Sbjct: 1041 IRDGGFRPETRPPLSKELLGSSAVAEKLVKLNPNSEYD 1078
>01_06_1186 +
35223272-35224723,35225536-35225610,35226245-35226585,
35226621-35227005,35227131-35227559
Length = 893
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 286 PGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPF 158
P PQ QD+P P +NA+T HN + VH +PF
Sbjct: 466 PSLPQQEKQDMPEPPLLPQVNASTGNHN--DHWLVHWLMMKPF 506
>10_08_0271 - 16382655-16384451
Length = 598
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -2
Query: 292 HSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQ 185
HSP PP P SP+ + A + + H Q
Sbjct: 83 HSPSPPDAGGSAKPESPHDSGVKAPSELTTVEHTKQ 118
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 303 IPSHTLRVPLRRRPKTCLVPQMGRLLTPPP 214
+PS+ +PL RRP + +V + R+ PPP
Sbjct: 964 VPSNRRDIPLVRRPPSPVVLSVPRVPRPPP 993
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 NSARGENAPHFSPTLEKVRL-KVSRPRAGILPGPQCG 116
NS G++A S T V+ K +RPR GI+ GP G
Sbjct: 72 NSPLGKDADSESETRSPVKTPKSTRPRPGIITGPIIG 108
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 286 PGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRNKM*NFARC 122
P P A Q +P +P G L + + +N + +RS + P R + + RC
Sbjct: 643 PRPETNANQAVPAAPTGHRLTHSPTTPPGPNNEKRNRSSRVPVAARKGLASCFRC 697
>03_05_0277 - 22651630-22651757,22652038-22652725
Length = 271
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 298 QSHSPGPPQTATQDLPRSPNGKALNAATSI 209
Q H P PP T PR +G A+ AA ++
Sbjct: 154 QQHQPPPPITQDATAPRFHDGAAVAAAAAV 183
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 20 RGECPSLFAHSRKG 61
+GECP+ F+HS KG
Sbjct: 147 QGECPNFFSHSDKG 160
>05_07_0100 + 27679280-27680320
Length = 346
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 334 PIYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPA 197
PI+ S + S S SP PP LP G L AA I A
Sbjct: 157 PIHPSAVRKPPSPSPSPSPPPPMALPLPSYRRGSPLPAAALIQQEA 202
>05_03_0177 - 9245131-9245793
Length = 220
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 307 GNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHN 203
G+S P P +A+ LPR G + + +HN
Sbjct: 20 GSSAGPPPAPAASASSPLPRQAQGHKVVSLAQLHN 54
>04_01_0318 -
4279228-4279279,4279670-4279935,4280208-4280322,
4280604-4280657,4281259-4282466
Length = 564
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 QEFGTRGECPSLFAHSRK-GTTKGQPSEGRYTPWPPMRNLTPS 130
+E+G P++ +S K G P G + WPP TPS
Sbjct: 359 REYGYSNSKPNVGVYSLKDGKEMSIPGLGEHLSWPPPAWFTPS 401
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = -2
Query: 280 PPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRNKM*NF-----ARCQI 116
PP+ + D+P S + T ++P N V C ++ + N+ + C+
Sbjct: 109 PPEERSSDVPTSSYTSINGSTTYRYSPEKNRLVALGCPNLGYIVDGSGNYVSGCMSACRR 168
Query: 115 PHWGPGSIPAL-GRLTFSR 62
P G ++P L GR T R
Sbjct: 169 PSLGNDTVPRLPGRCTGER 187
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 357 VVGKVSGNPSTNHKINTAIPSH-TLRVP 277
V G V NPS H N +PSH TL +P
Sbjct: 894 VQGSVPPNPSIMHTPNAPMPSHNTLPLP 921
>06_03_0433 - 20718726-20719895
Length = 389
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 307 GNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVH 179
G HS G T +LP N + + ATS + A + VH
Sbjct: 209 GTDDEHSSGTLPDETGNLPSGQNENSQSDATSTTSDASSEAVH 251
>06_01_1015 - 7940366-7941148
Length = 260
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 1 AAGIRHEGRMPLTFRPLSKRYD*RSAVRGQVYSLAPNAEFD 123
A +RH+GR + L +R R++ R + ++A A FD
Sbjct: 59 AQTLRHQGRRVVVGEELGRRSTRRNSARRRQVNVASGAAFD 99
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 399 YKYRKISGNRNLAVVVGKVSGNPSTNHKINTAIPSHTLRVPLRRRPKTCLVPQ 241
YK K S RN VVV + S H + + + +LR + P CLV +
Sbjct: 94 YKVIKASVGRNHTVVVTDDGKSFSFGHNKHGQLGTGSLRNEIETSPMPCLVTE 146
>04_01_0322 - 4298733-4299524
Length = 263
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 QEFGTRGECPSLFAHSRK-GTTKGQPSEGRYTPWPPMRNLTPS 130
++F P++ A+S K G P G + WPP TPS
Sbjct: 218 RDFWCSNRKPNVGAYSLKDGKAMSIPGLGEHLSWPPPAWFTPS 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,502
Number of Sequences: 37544
Number of extensions: 288993
Number of successful extensions: 818
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -