Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D02
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 29   1.4  
SB_961| Best HMM Match : CUB (HMM E-Value=3.4e-08)                     29   1.9  
SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)       28   3.3  
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)                   27   4.4  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_40231| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    27   4.4  
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             27   5.8  
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)          27   7.7  
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   27   7.7  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             27   7.7  
SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)                 27   7.7  

>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 320 TRSIRQFPVTLSGSPSDGDPRLAS 249
           TRS++Q P+T   S  DGDP   S
Sbjct: 614 TRSLKQIPLTEISSEKDGDPETGS 637


>SB_961| Best HMM Match : CUB (HMM E-Value=3.4e-08)
          Length = 490

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 178 YVPAYYEQDCECWWRR*EPSHLGN 249
           Y PA Y  D +C WR   PSH  N
Sbjct: 129 YFPAKYPVDVDCKWRITVPSHHSN 152


>SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)
          Length = 510

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 271 TATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRNKM*NFA 128
           ++ QDLP SP     + A    NP+   Q+ R     F LR ++  FA
Sbjct: 274 SSIQDLPDSPTDPVESGAALTPNPSSIIQLTRPAIRLFSLREEIREFA 321


>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
          Length = 573

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = -3

Query: 294 HTLRVPLRRR-PKTCLVPQMG------RLLTPPPAFTILLIIRRYIGPVRNLSF*EIKCR 136
           H++ V + R+ PKTC +  +       R+L+P  A   +++  R + P+  L F  +K R
Sbjct: 443 HSILVVINRQAPKTCPLEALYFVMVKIRILSPLEALYFVMVKIRVLSPLEALYFVMVKIR 502

Query: 135 IL 130
           +L
Sbjct: 503 VL 504


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 346 SVREPIYQSQDQYGNSQSHSPGPPQ 272
           S R P++  + +YG   ++SPGP Q
Sbjct: 577 SARTPLHPIKAKYGQRSANSPGPDQ 601


>SB_40231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 360 VVVGKVSGNPSTNHKINTAIPSHTLRVPLRRRP 262
           V   ++SG P+     NTA P   LR+P    P
Sbjct: 1   VQFARISGGPTPQPVDNTATPPWLLRIPAENEP 33


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 346 SVREPIYQSQDQYGNSQSHSPG-PPQTATQDLPRSPNGKALNAATSIHNPAHNTQV 182
           +VRE     +  + N QS  P  PP+ + QD+ R+P        T IH     T++
Sbjct: 615 TVREQRILIERTHVNVQSAPPPRPPEPSEQDMARTPQYGYEERRTEIHRTVQPTEL 670


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 399 YKYRKISGNRNLAVV-VGKVSGNPS--TNHKINTAIPSHTLRVPLRRRPKTCLVPQ 241
           YK RK S + + +    G +SGN S  +N  +NT  PSH   +P  + P+T  V Q
Sbjct: 242 YKARKNSNSSSSSFGDAGYISGNGSRDSNPALNTVTPSHQ-GLPGNQIPETSYVIQ 296


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 351 GKVSGNPSTNHKINTAI-PSHTLRVPLRRRPKTCLVPQMG 235
           G   GNP T   I+ A  PS T  VPL  RP T  V   G
Sbjct: 86  GLSPGNPVTTTVIHIAPRPSVTAAVPLAPRPNTMTVLSQG 125


>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 712

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 121 QIPHWGPGSIPALGRLTFSRTFSRVGE 41
           + P   P S P+L  + FS TFSR+G+
Sbjct: 674 RFPRHFPNSFPSLEYVPFSFTFSRMGK 700


>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 304 NSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRS 173
           N+  H+  P  T    LP +    +L   T  HN  HNT  H S
Sbjct: 79  NTTRHNSLPNTTRHNSLPNTTRHNSLPNTTR-HNSLHNTTRHNS 121


>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 6   RNSARGENAPHFSPTLEKVRLKVS--RPRAGIL 98
           +N +RGE  PH++ T  K + K+S  + R+ IL
Sbjct: 99  QNMSRGEQLPHWARTRAKEKFKISTRQKRSAIL 131


>SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 331 IYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNP 200
           I  SQ+Q G+SQS  P P  T    +P +    + N+  S H P
Sbjct: 183 IKASQEQKGSSQSVKPMPSDT----VPDTAEDMSQNSDDSFHTP 222


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 205  CECWWRR*EPSHLGNEASLGSPSEGDPESVTGNCRI 312
            C+C     EPSH G    L SP   +P    G C+I
Sbjct: 2034 CQC-----EPSHTGKNCQLPSPCFRNPCENNGVCKI 2064


>SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)
          Length = 251

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -2

Query: 286 PGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRS 173
           P PP T     P           T+ HN  HNT  H S
Sbjct: 107 PTPPGTTACPTPPGTTACTTPPGTTRHNSLHNTTRHNS 144


>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 23  GECPSLFAHSRKGTTKGQPSEGRYTPWPP 109
           GECP   + ++ GT+    S G   P+PP
Sbjct: 332 GECPPACSETQSGTSGRLRSPGYPRPYPP 360


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 295 SHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCK 167
           SH    P    Q +P +PNG A+  +     P H TQ  +S K
Sbjct: 53  SHENHLPGIVYQHIPGTPNGVAIETSA----PDHGTQESKSSK 91


>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
          Length = 424

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 304 NSQSHSPGPPQTATQDLPRS 245
           N + HSP PP+TA +  PR+
Sbjct: 4   NLEHHSPLPPETANRPSPRN 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,414
Number of Sequences: 59808
Number of extensions: 318323
Number of successful extensions: 909
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)