Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D02
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   2.2  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   2.2  
Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    27   3.9  
U80843-18|AAN63439.1|  289|Caenorhabditis elegans Hypothetical p...    27   5.1  
U80843-17|AAK71358.1|  444|Caenorhabditis elegans Hypothetical p...    27   5.1  
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    27   5.1  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     27   5.1  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    27   5.1  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    27   5.1  
Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 328  YQSQDQYGNSQSHSPGPPQTATQDLPRSPN-GKALNA-ATSIHNPAHNTQVHR 176
            + +Q Q+G +  H   P     Q +P+SPN  +  N     + +P H  Q H+
Sbjct: 1362 FVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQLMSPIHQHQFHQ 1414


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 328 YQSQDQY-GNSQSHSPGPPQTATQDLPRSPNG 236
           +Q   +Y GN   + P PPQ   Q  P++P G
Sbjct: 402 FQENQRYEGNFVEYQPPPPQQHQQQQPQAPEG 433


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 328  YQSQDQYGNSQSHSPGPPQTATQDLPRSPN-GKALNA-ATSIHNPAHNTQVHR 176
            + +Q Q+G +  H   P     Q +P+SPN  +  N     + +P H  Q H+
Sbjct: 1362 FVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQLMSPIHQHQFHQ 1414


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 328  YQSQDQYGNSQSHSPGPPQTATQDLPRSPN-GKALNA-ATSIHNPAHNTQVHR 176
            + +Q Q+G +  H   P     Q +P+SPN  +  N     + +P H  Q H+
Sbjct: 1362 FVNQSQFGPNNGHPTPPYGYMQQMIPQSPNFNQQYNGMGNQLMSPIHQHQFHQ 1414


>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 334 PIYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNT 188
           P YQ   Q+ N+Q        T+T++   S  G A N +T + +  +++
Sbjct: 335 PQYQQYTQHSNAQRPQQPGTSTSTEEQRMSKGGAATNYSTMVESGTNDS 383


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 334 PIYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNT 188
           P YQ   Q+ N+Q        T+T++   S  G A N +T + +  +++
Sbjct: 335 PQYQQYTQHSNAQRPQQPGTSTSTEEQRMSKGGAATNYSTMVESGTNDS 383


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 241 LGNEASLGSPSEGDPESVTGNCR-IDLVIGR 330
           L  EASL  PSEG  E +  NC  + + IGR
Sbjct: 635 LREEASLLMPSEGSLEKLFANCEFVQVPIGR 665


>U80843-18|AAN63439.1|  289|Caenorhabditis elegans Hypothetical
           protein C32B5.1b protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 399 YKYRKISGNRNLAVVVGKVSGNPST 325
           Y Y ++ GNRN+ + V K+  N +T
Sbjct: 107 YLYERVLGNRNIPIKVSKLDINSNT 131


>U80843-17|AAK71358.1|  444|Caenorhabditis elegans Hypothetical
           protein C32B5.1a protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 399 YKYRKISGNRNLAVVVGKVSGNPST 325
           Y Y ++ GNRN+ + V K+  N +T
Sbjct: 223 YLYERVLGNRNIPIKVSKLDINSNT 247


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 370 KLGSSSR*SVREPIYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKA 230
           K+ SSS   + + + QS +   +S  H P  PQ+   D   SP   +
Sbjct: 97  KISSSSSFRISDILEQSPNNSSHSNDHDPS-PQSIKSDFSTSPRASS 142


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 REPIYQSQDQYGNSQSHSPGPPQTATQDLPRSP 242
           R     S    G+S  H+P PP   T ++P++P
Sbjct: 183 RRASQSSSTSAGSSIPHAPPPPVPLTSNIPQAP 215


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 REPIYQSQDQYGNSQSHSPGPPQTATQDLPRSP 242
           R     S    G+S  H+P PP   T ++P++P
Sbjct: 169 RRASQSSSTSAGSSIPHAPPPPVPLTSNIPQAP 201


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 REPIYQSQDQYGNSQSHSPGPPQTATQDLPRSP 242
           R     S    G+S  H+P PP   T ++P++P
Sbjct: 169 RRASQSSSTSAGSSIPHAPPPPVPLTSNIPQAP 201


>Z81523-2|CAB04248.1|  928|Caenorhabditis elegans Hypothetical
           protein F32H2.1b protein.
          Length = 928

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 154 KRKVPYRTYVPAYYEQD 204
           KRKVP   Y+P Y++ D
Sbjct: 89  KRKVPVHLYMPPYFKDD 105


>Z81523-1|CAB04241.1|  944|Caenorhabditis elegans Hypothetical
           protein F32H2.1a protein.
          Length = 944

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 154 KRKVPYRTYVPAYYEQD 204
           KRKVP   Y+P Y++ D
Sbjct: 89  KRKVPVHLYMPPYFKDD 105


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 333 PSTNHKINTAIPSHTLRVPLRRRPKTCLVPQMGRLLTPPP 214
           P TN  ++T   S T  VP+R    T +  Q+ R  TP P
Sbjct: 337 PQTNDSVSTRRSSTTWEVPIR---PTTMNSQISRKRTPSP 373


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 193 YEQDC----ECWWRR*EPSHLGNEASLGSPSE 276
           Y+++C    E WWR  EPSHLG   S  S SE
Sbjct: 478 YKRNCVDFLEEWWRC-EPSHLGFCLSCSSYSE 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,908
Number of Sequences: 27780
Number of extensions: 236722
Number of successful extensions: 718
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)