Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D02
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase f...    30   0.51 
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    29   1.6  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   2.7  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   2.7  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    27   3.6  
At5g55960.1 68418.m06979 expressed protein                             27   3.6  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    27   3.6  
At5g65440.1 68418.m08230 expressed protein                             27   4.8  
At1g70770.1 68414.m08158 expressed protein                             27   4.8  
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    27   6.3  
At3g22830.1 68416.m02877 heat shock transcription factor family ...    26   8.3  

>At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 530

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 250 RSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRN 146
           R  +G+ L   TS ++P+H +   + C+E +F+RN
Sbjct: 206 RLGSGRRLIGITSFNSPSHRSLFSQFCQEIYFVRN 240


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 326  PITRSIRQFPVTLSGSPSDGDPRLA--SFPK 240
            P TRSI   P + SG+PS+ D +L+  +FP+
Sbjct: 1239 PRTRSIDMHPESRSGTPSEDDKKLSTTTFPR 1269


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 334  PIYQSQDQYGNSQSHSPGPPQTATQDLPRSPN-GKALNAATSIHNP 200
            P+++  D  G    H P      T +LP  P+ G +  A TS + P
Sbjct: 1825 PLFEPSDHLGFRSEHFPPMANLCTDNLPGEPSAGPSERAGTSTNIP 1870


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 22/94 (23%), Positives = 35/94 (37%)
 Frame = -2

Query: 325 QSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLRN 146
           QSQ  +GN+   S  P          +P+  +  A ++    A +T    +   P F  +
Sbjct: 130 QSQPAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFGASSTPAFGATNTPAFGAS 189

Query: 145 KM*NFARCQIPHWGPGSIPALGRLTFSRTFSRVG 44
              +F     P +G    PA G  +   TF   G
Sbjct: 190 NSPSFGATNTPAFGASPTPAFG--STGTTFGNTG 221


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 346 SVREPIYQSQDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQ 185
           S++ P   +   + +  S S  PPQ  +     +  G +++A +S ++  +N+Q
Sbjct: 112 SIKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVSATSSENSAVNNSQ 165


>At5g55960.1 68418.m06979 expressed protein
          Length = 648

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 319 QDQYGNSQSHSP-GPPQTATQDLPRSPNGKALNAATSI 209
           Q+ + ++ S  P  PP +++   PR P+G   ++ TS+
Sbjct: 21  QEMFRSASSRKPQDPPSSSSSSPPRKPSGDGSSSKTSL 58


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 304 NSQSHSPGPPQTATQDLPRSPNGKALNAA 218
           NS +  P PP T+T   P  P+G  + AA
Sbjct: 203 NSLTDLPEPPPTSTSPTPPPPSGGQMTAA 231


>At5g65440.1 68418.m08230 expressed protein
          Length = 1050

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 27  NAPHFSPTLEKVRLKVSRPRAGILPGPQCGI 119
           + P    T+ K++L+V R + G+ P P C I
Sbjct: 206 SVPKSKKTIGKIKLQVRRIKMGLDPPPGCNI 236


>At1g70770.1 68414.m08158 expressed protein
          Length = 610

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -3

Query: 369 NLAVVVGKVSGNPSTNHKINTAIPSHTLRVPLRRRPKTCLVPQMGRLLTPPPAFTILL 196
           NL  VVG  + NP +   I   +    L  P  R        + G  L PPP+F ILL
Sbjct: 330 NLLPVVGNKNCNPQSRDLILQLVEK-ILTNPKARTILVNGAVRKGERLIPPPSFEILL 386


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 235 SHLGNEASLGSPSEGDPESVTGN 303
           S LGN +S GS + G P S  GN
Sbjct: 114 SGLGNASSGGSSARGPPSSAAGN 136


>At3g22830.1 68416.m02877 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 406

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -2

Query: 319 QDQYGNSQSHSPGPPQTATQDLPRSPNGKALNAATSIHNPAHNTQVHRSCKEPFFLR 149
           ++++    S SP PP +++     S    A+N  T++  P     +H S   PF  +
Sbjct: 9   KEEFPAGFSDSPSPPSSSSYLYSSSMAEAAINDPTTLSYPQPLEGLHESGPPPFLTK 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,933,221
Number of Sequences: 28952
Number of extensions: 221875
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)