Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D01
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 175 3e-45
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 175 3e-45
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.0
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 1.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 5.4
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 5.4
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 5.4
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.2
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 7.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 7.2
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 175 bits (426), Expect = 3e-45
Identities = 83/124 (66%), Positives = 94/124 (75%)
Frame = +1
Query: 85 LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 264
+GPQ GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 265 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 444
AAQD A KCK +GITALHIK+RA AQ M+IGRIEDVTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 445 SDST 456
+DST
Sbjct: 125 TDST 128
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 175 bits (426), Expect = 3e-45
Identities = 83/124 (66%), Positives = 94/124 (75%)
Frame = +1
Query: 85 LGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 264
+GPQ GE+VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64
Query: 265 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 444
AAQD A KCK +GITALHIK+RA AQ M+IGRIEDVTP+P
Sbjct: 65 AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124
Query: 445 SDST 456
+DST
Sbjct: 125 TDST 128
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 187 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 288
ET+ V G +KV + + + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 273 GCC*EM*NPGDNCP 314
GCC + +PGDNCP
Sbjct: 33 GCCPQCTSPGDNCP 46
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = -2
Query: 225 LHFHASGNTGNSFSTGQIGNVHE-----CVIEGGEYVCHPEYYLTHQ 100
LH HA T +SFST + E ++E V H YL +Q
Sbjct: 433 LHRHAHSLTSSSFSTKTLATTKEIQNSPTLVESSTVVHHDPSYLQNQ 479
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 135 YVCHPEYYL-THQVLGTKSHLNLLFC 61
YVC PEY++ H V T++H ++ C
Sbjct: 307 YVCSPEYHMFAHPV--TQNHYMVMLC 330
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 5.4
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = +1
Query: 19 KLKAKPWPLRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIA 198
+L WPL + K+ + + LGP+ L ++ F T +SGR A
Sbjct: 122 ELLVTEWPLHAVPLDKDLLSLELGPEKLEESLLQRSTDALIDFERTHGRFPRVSGRGPYA 181
Query: 199 RVTGGMKVKADRDEAS 246
+ K ++EA+
Sbjct: 182 AKMLELLEKTYQEEAT 197
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 309 SYPQGFTFLSNILCSQHSGVG*SLITISLHFHASGNTG 196
S+P LS+ + QH G+ SL++ +++ S G
Sbjct: 415 SFPAATLMLSDFVPKQHQGIAASLVSTVVNYSISIGLG 452
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 399 TSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQHSGVG 247
TSE + G+ + S L + L+ P G T ++ SQ+SG G
Sbjct: 108 TSEDEDDYHGSANSSTVLPPRTENALHAASPKPSGSTGYTSPALSQNSGSG 158
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 201 TGNSFSTGQIGNVHECVIEGGEYV 130
T FS Q +HEC+++ G YV
Sbjct: 469 TKRLFSLLQSETIHECLVKAGGYV 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,354
Number of Sequences: 5004
Number of extensions: 44830
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -