Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D01
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 186 8e-48
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 174 4e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 166 1e-41
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 1e-06
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 33 0.15
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 29 2.4
03_01_0235 - 1842909-1843498,1844380-1844569 29 3.1
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 28 4.1
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 28 4.1
01_04_0088 + 15930755-15931174,15931262-15931321 28 4.1
04_01_0296 + 3927741-3927960,3928257-3928900 28 5.5
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 27 9.6
09_04_0520 + 18286435-18287279,18287818-18288697 27 9.6
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 27 9.6
08_02_1092 + 24267737-24268641,24269005-24269884 27 9.6
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 9.6
02_02_0286 - 8589736-8590857 27 9.6
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 27 9.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 186 bits (454), Expect = 8e-48
Identities = 93/137 (67%), Positives = 103/137 (75%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145
Query: 406 MKIGRIEDVTPVPSDST 456
MKIGRIEDVTPVP+DST
Sbjct: 146 MKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 174 bits (423), Expect = 4e-44
Identities = 93/148 (62%), Positives = 103/148 (69%), Gaps = 11/148 (7%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 5 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 64 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123
Query: 406 MKIGRI-----------EDVTPVPSDST 456
MKIGRI EDVTPVP+DST
Sbjct: 124 MKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 166 bits (403), Expect = 1e-41
Identities = 84/126 (66%), Positives = 92/126 (73%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 4 RKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 63 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 406 MKIGRI 423
MKIGRI
Sbjct: 123 MKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 202 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 294
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 202 VTGGMKVKADRDEASPYAAMLAAQDVA 282
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 285 LSNILCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYY-L 109
L NI+ H VG ++T L + GNT ++ IG V C I GG Y +Y L
Sbjct: 37 LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDL 95
Query: 108 THQVLG 91
H +LG
Sbjct: 96 HHGILG 101
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 7 HEVSKLKAKPWPLRKN-KVAKEEVQVTLGPQHLVGEI--VFGVAHIFASFNDTFVHVTDL 177
H +++L+A+ L ++ +EE+Q+ P VGE+ V G + + + +V D+
Sbjct: 57 HNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDI 116
Query: 178 SGRETIARVTGGMKVKADRD 237
I ++T +V D
Sbjct: 117 DKSIDITKITPSTRVALRND 136
>03_01_0235 - 1842909-1843498,1844380-1844569
Length = 259
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 120 EYYLTHQVLGTKSHLNLLFCNFVFSQGPW 34
++YL+ VLG K H N++ ++ PW
Sbjct: 32 DFYLSRVVLGKKLHFNIIGTLNIYRHDPW 60
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 7 HEVSKLKAKPWPLRKNKVAKEEVQVTLGP 93
H + +++K +PL++ KV EEV+ + P
Sbjct: 130 HNIQDVRSKIFPLKRKKVNAEEVESPIAP 158
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 131 CATPNTISPTKCWGPRVT*TSSFATLFFLRGHGLAFSF 18
C P+ SP + W PR +F+LRG +F
Sbjct: 609 CPRPDPASPGRIWPPRRHSDDDDPAVFYLRGRSARLNF 646
>01_04_0088 + 15930755-15931174,15931262-15931321
Length = 159
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 28 AKPWPLRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTF 159
AKP K + K+E P LV +IV+ ++IFASF DT+
Sbjct: 114 AKPHKSWKKLLYKDEQSFVCTPP-LVVQIVYIWSYIFASFFDTY 156
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 498 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 325
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 324 LNVQ 313
+Q
Sbjct: 275 PTLQ 278
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 127 AHIFASFNDTFVHVTDLSGRETIARVT 207
+H+++ D V++TDLS RE++ T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 131 CATPNTISPTKCWGPR 84
C P+ ++PT C+GPR
Sbjct: 364 CIQPSCVAPTTCFGPR 379
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 70 EVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVT 171
E+++ + P G I +H FAS++DT + +T
Sbjct: 140 ELEIRIKPDPEAGTITITRSHCFASYSDTGIGMT 173
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 131 CATPNTISPTKCWGPR 84
C P+ ++PT C+GPR
Sbjct: 384 CIQPSCVAPTTCFGPR 399
>07_03_0562 + 19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 248 GEASSRSAFTFMPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTISPT 102
G SSR+ F+ PP R S P V + +S A+ + P +SPT
Sbjct: 860 GPDSSRNIFSAFPPAVRENQSIPSAPVAQSWISF-GASSESKPTIVSPT 907
>02_02_0286 - 8589736-8590857
Length = 373
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 57 SCKRGGSGDSWSPALGG*DSIRGG 128
S G G W PALGG D +GG
Sbjct: 284 SVMAGLGGGQWPPALGGADEQQGG 307
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 124 PRILSHPPSAGDQESPEPPL 65
P + PPS G +SPEPPL
Sbjct: 44 PGLPVSPPSPGYSDSPEPPL 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,329
Number of Sequences: 37544
Number of extensions: 358403
Number of successful extensions: 1193
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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