Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D01
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)              158   2e-39
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      29   2.4  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66)                     28   5.6  
SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)                    28   5.6  
SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)               27   7.4  
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)                     27   9.8  
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)                  27   9.8  
SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score =  158 bits (384), Expect = 2e-39
 Identities = 81/114 (71%), Positives = 87/114 (76%), Gaps = 1/114 (0%)
 Frame = +1

Query: 85  LGPQHL-VGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 261
           LG +H+  GE+VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246

Query: 262 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 423
           LAAQDVA +CK +GITALHIKLRA            AQ          MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 273 LCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECV 151
           L  + S +  SL+T   H H+S    NS S  +  N+H  V
Sbjct: 862 LVKRRSSISRSLVTAQDHLHSSRENSNSTSVNEPSNLHNDV 902


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 109 EIVFG--VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 237
           +++ G  + +I  +FND    + DLSG+ETI  ++   K++ +RD
Sbjct: 147 DVILGADIIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 327 PCDWR*QDKDSWTWCPVCSPCSRSFQHEDWPH*RCD----PCAV 446
           P +W   D   W   P+C    ++    D+PH  C+    PC +
Sbjct: 578 PYEWNYMDITKW---PICKKSQKNVSRLDYPHMNCEITARPCCI 618


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 7   HEVSKLKAKPWPLRKNKVAKEEVQVT 84
           HE  K+  KP PLR+ +  K++ +VT
Sbjct: 507 HEYHKVLRKPLPLRRRRKLKKKAEVT 532


>SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66)
          Length = 146

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 354 DSWTWCPVCSPCSR 395
           D W+ CP+CS C+R
Sbjct: 114 DVWSMCPMCSQCAR 127


>SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)
          Length = 245

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 7   HEVSKLKAKPWPLRKNKVAKEEVQVT 84
           HE  K+  KP PLR+ +  K++ +VT
Sbjct: 201 HEYHKVLRKPLPLRRRRKLKKKAEVT 226


>SB_20938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 532 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 428
           LL+    V++  ++ + ++F HP  + SQ  QG H
Sbjct: 94  LLHKTVKVAVVARVVSDIIFSHPYWLTSQNCQGGH 128



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 532 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 428
           LL+    V++  ++ + ++F HP  + SQ  QG H
Sbjct: 145 LLHKTVKVAVVARVVSDIIFSHPYWLTSQNCQGGH 179



 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 532 LLYSKSTVSLA*KITACVLFVHPSCVWSQTAQGSH 428
           LL+    V+   ++ + ++F HP  + SQ  QG H
Sbjct: 43  LLHKTVKVATVARVVSDIIFSHPYWITSQNCQGCH 77


>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
          Length = 141

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 184 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 321
           R   AR+     V A  DEA+    +   QD+  KCK LG+T + I
Sbjct: 63  RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108


>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 433

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 52  NKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 228
           NK+ K    +TLG   +  E     AH  A  N    HVT+   GRE  ++     KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388

Query: 229 DRDEASPYAAM 261
           +    +P + M
Sbjct: 389 EGAAPAPSSRM 399


>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 52  NKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 228
           NK+ K    +TLG   +  E     AH  A  +    HVTD    RE  ++ +   KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298

Query: 229 DRDEASPYAAMLAAQDV 279
           +    +P   M AA  +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315


>SB_17120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 494 NYSLRPLRPPFLRVESDGTGVTSSMR 417
           NY L PLR P  R E+  +G+  ++R
Sbjct: 70  NYELSPLRGPCCRSENGASGIQVALR 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,039,789
Number of Sequences: 59808
Number of extensions: 386015
Number of successful extensions: 1088
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)