Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D01
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal prote... 194 4e-50
Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical pr... 28 4.9
U80451-11|AAB37845.2| 206|Caenorhabditis elegans Glutathione s-... 27 6.5
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 27 6.5
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 27 6.5
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 27 6.5
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 27 6.5
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 27 8.6
>U00033-5|AAC48301.1| 152|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 14 protein.
Length = 152
Score = 194 bits (472), Expect = 4e-50
Identities = 93/139 (66%), Positives = 104/139 (74%)
Frame = +1
Query: 40 PLRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 219
P RK K +E+ V+LGPQ GE++FGVAHIFASFNDTFVH+TD+SGRETI RVTGGMK
Sbjct: 3 PARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMK 62
Query: 220 VKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXX 399
VKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA AQ
Sbjct: 63 VKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALAR 122
Query: 400 XXMKIGRIEDVTPVPSDST 456
MKIGRIEDVTP+PSD T
Sbjct: 123 AGMKIGRIEDVTPIPSDCT 141
>Z81125-4|CAB03383.3| 594|Caenorhabditis elegans Hypothetical
protein T22A3.6 protein.
Length = 594
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 387 TESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNILCSQ 262
TESRL + + C++ + R + V+ SY + F + L S+
Sbjct: 487 TESRLFMNTEASCMLLNRRNSVEVKNSYKESPFFTNEKLVSE 528
>U80451-11|AAB37845.2| 206|Caenorhabditis elegans Glutathione
s-transferase protein 6 protein.
Length = 206
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 333 RTELNVQGSYPQGFTFLSNILCSQHSG--VG*SLITISL 223
RT++ V ++ + F F NIL S HSG VG SL + L
Sbjct: 121 RTDVFVP-AFKKNFEFFENILASNHSGFFVGNSLTWVDL 158
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 397 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 299
ERE Q Q Q++L Q H A A QL+P
Sbjct: 408 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 440
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 397 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 299
ERE Q Q Q++L Q H A A QL+P
Sbjct: 920 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 952
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 397 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 299
ERE Q Q Q++L Q H A A QL+P
Sbjct: 925 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 397 EREHGEQTGHQVQESLSCYLQSHGA*CAGQLSP 299
ERE Q Q Q++L Q H A A QL+P
Sbjct: 925 ERERERQHQQQAQQALHQQQQQHAAAAANQLNP 957
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 215 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 111
+PP+ + P+ VT + KE +C+TP +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 215 MPPVTRAIVSRPDRSVTCTNVSLKEANMCATPNTI 111
+PP+ + P+ VT + KE +C+TP +
Sbjct: 133 VPPIVPEAPTSPEPEVTTSTEKPKEPEVCSTPGCV 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,713
Number of Sequences: 27780
Number of extensions: 279433
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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