Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D01
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 184 3e-47
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 184 4e-47
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 183 8e-47
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ... 36 0.017
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 34 0.053
At4g25220.1 68417.m03629 transporter, putative similar to glycer... 29 2.6
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 8.0
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 184 bits (448), Expect = 3e-47
Identities = 91/137 (66%), Positives = 102/137 (74%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 4 RKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 406 MKIGRIEDVTPVPSDST 456
MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 184 bits (447), Expect = 4e-47
Identities = 91/137 (66%), Positives = 101/137 (73%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 4 RKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 406 MKIGRIEDVTPVPSDST 456
MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 183 bits (445), Expect = 8e-47
Identities = 90/137 (65%), Positives = 101/137 (73%)
Frame = +1
Query: 46 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 225
RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 4 RKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
Query: 226 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 405
ADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA AQ
Sbjct: 63 ADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSG 122
Query: 406 MKIGRIEDVTPVPSDST 456
MKIGRIEDVTP+P+DST
Sbjct: 123 MKIGRIEDVTPIPTDST 139
>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
protein similar to zinc finger protein OBP2 GI:5059394
from [Arabidopsis thaliana]
Length = 340
Score = 35.9 bits (79), Expect = 0.017
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = -2
Query: 405 AGTSESTESRLGTRSRSLCLVTSSRTELNVQGSYPQGFTFLSNIL-CSQHSGVG*SLITI 229
+G S+S+ S +S S+ TS NVQ F FL + +Q G+G +L I
Sbjct: 151 SGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLGGIGLNLAAI 210
Query: 228 SLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYYLTHQVLGTKSHLNL 70
+ + +GNT +SF +G H G + E L LG+ SH L
Sbjct: 211 NGNNGGNGNTSSSF-LNDLGFFHGGNTSGPVMGNNNENNLMTS-LGSSSHFAL 261
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 34.3 bits (75), Expect = 0.053
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 124 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 303
+ HI N+TFV VTD G +G + + + Y A A+++ + K +G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254
Query: 304 ITALHIKL 327
+ ++ +K+
Sbjct: 255 LKSVVVKV 262
>At4g25220.1 68417.m03629 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 504
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 506 LSLKNYSLRPLRPPFLRVESDGTGVTSSMR 417
L + Y P+ PP + E DGT + S+MR
Sbjct: 220 LGIVVYLFLPVNPPTVEAERDGTEIDSTMR 249
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 205 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 312
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,610
Number of Sequences: 28952
Number of extensions: 265259
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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