Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C24
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    28   0.74 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.3  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   4.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   4.0  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   9.1  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    24   9.1  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 ERESKQPSPDAVRDDQLRHHGTK 339
           E ESK P P  VRD  L+ HG K
Sbjct: 9   EEESKCPVPPEVRDAWLKSHGGK 31


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKID--EEGLKLTNVNRNNQA 295
           PPP     P   AP PP +M G + A ++  ++G KL     N+++
Sbjct: 6   PPPPPAPAPAAAAPAPP-LMTGDRSALLNSIQKGKKLKKATTNDRS 50


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 233 KLAKIDEEGLKLTNVNRNNQALMQYAMT 316
           K + + + GL ++N N NN    Q+A++
Sbjct: 330 KFSSVCDHGLDISNANINNTLTQQFALS 357


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 199 HNLWRFNVRRWRIITPAGFLLPFAITFRLGLLVALRTG 86
           H+ WR+ +  W I+ PA   +PF   +      A R G
Sbjct: 244 HSTWRWGIAVWTILIPA-CSIPFLAVYSYYQFRAWREG 280


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +1

Query: 178 H*TAIGYGTVASGNYARSQVGENR*GRFKVDERESKQPSPDAVRDDQLRHHGTKPR 345
           H     YG  AS NY  S+   N            ++PSPD   +   R  G + R
Sbjct: 285 HNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYR 340


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 164  PPPADIKPP*VMAPLPPGIMPGP 232
            PPP  + PP    P+P G    P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP 1731


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 197 MAPLPPGIMPGPKLAKIDEEGLKLTNVNRNNQA 295
           ++P P G +PG K  ++    +++  ++ N  A
Sbjct: 90  ISPAPVGYVPGSKTNELANNSMEMQEISPNGSA 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,885
Number of Sequences: 5004
Number of extensions: 32630
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)