BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_C24 (444 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 28 0.74 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.3 SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 4.0 SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 4.0 SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 6.9 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.1 SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 24 9.1 >SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 27.9 bits (59), Expect = 0.74 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 271 ERESKQPSPDAVRDDQLRHHGTK 339 E ESK P P VRD L+ HG K Sbjct: 9 EEESKCPVPPEVRDAWLKSHGGK 31 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 27.1 bits (57), Expect = 1.3 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +2 Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKID--EEGLKLTNVNRNNQA 295 PPP P AP PP +M G + A ++ ++G KL N+++ Sbjct: 6 PPPPPAPAPAAAAPAPP-LMTGDRSALLNSIQKGKKLKKATTNDRS 50 >SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 25.4 bits (53), Expect = 4.0 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = +2 Query: 233 KLAKIDEEGLKLTNVNRNNQALMQYAMT 316 K + + + GL ++N N NN Q+A++ Sbjct: 330 KFSSVCDHGLDISNANINNTLTQQFALS 357 >SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 25.4 bits (53), Expect = 4.0 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -3 Query: 199 HNLWRFNVRRWRIITPAGFLLPFAITFRLGLLVALRTG 86 H+ WR+ + W I+ PA +PF + A R G Sbjct: 244 HSTWRWGIAVWTILIPA-CSIPFLAVYSYYQFRAWREG 280 >SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 24.6 bits (51), Expect = 6.9 Identities = 16/56 (28%), Positives = 21/56 (37%) Frame = +1 Query: 178 H*TAIGYGTVASGNYARSQVGENR*GRFKVDERESKQPSPDAVRDDQLRHHGTKPR 345 H YG AS NY S+ N ++PSPD + R G + R Sbjct: 285 HNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYR 340 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 24.2 bits (50), Expect = 9.1 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = +2 Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232 PPP + PP P+P G P Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP 1731 >SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 24.2 bits (50), Expect = 9.1 Identities = 8/33 (24%), Positives = 18/33 (54%) Frame = +2 Query: 197 MAPLPPGIMPGPKLAKIDEEGLKLTNVNRNNQA 295 ++P P G +PG K ++ +++ ++ N A Sbjct: 90 ISPAPVGYVPGSKTNELANNSMEMQEISPNGSA 122 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,631,885 Number of Sequences: 5004 Number of extensions: 32630 Number of successful extensions: 112 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 162176800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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