Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C24
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0258 - 16175258-16176069,16176111-16176414 30 0.73
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 0.96
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 29 2.2
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.2
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 2.2
05_07_0219 - 28474661-28475146,28475979-28476644 28 2.9
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164... 28 3.9
10_03_0023 - 7151465-7152111,7152222-7152405 28 3.9
07_03_1223 + 24985730-24985916,24986008-24986039,24986790-249868... 28 3.9
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 28 3.9
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 27 5.1
04_04_1179 - 31512592-31515126 27 5.1
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 27 6.8
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 27 6.8
08_02_0024 - 11354491-11354915,11355747-11355894 27 9.0
08_01_0059 - 394001-394708 27 9.0
05_01_0142 - 940421-940701,941262-941574 27 9.0
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 30.3 bits (65), Expect = 0.73
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 223 ARSQVGENR*GRFKVDERESKQPSPDAVRDDQLRHHGTKP 342
A+ + GE+R GR + E++QP AVR +LRH P
Sbjct: 125 AQGEDGEHRRGRGEAGAPEAEQPRGGAVRLRRLRHAAAVP 164
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.9 bits (64), Expect = 0.96
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 164 PPPADIKP--P*VMAPLPPGIMPGP 232
PPP DI P P + PLPP + P P
Sbjct: 412 PPPPDISPSPPPSVTPLPPVVYPSP 436
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 155 SDNPPPADIKP-P*VMAPLPPGIMPGP 232
S P P + P P V AP PPGI P P
Sbjct: 656 SYEPSPPEYAPEPPVYAPYPPGIFPSP 682
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 164 PPPADIKP-P*VMAPLPPGIMPGP 232
P P + P P V AP PPGI P P
Sbjct: 708 PSPPEYAPEPPVYAPYPPGITPSP 731
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 155 SDNPPPADIKPP*VMAPLPPGIMPGP 232
S +PPP+ P V+ P PP + P P
Sbjct: 418 SPSPPPSVTPLPPVVYPSPPEVTPSP 443
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 164 PPPADIKP-P*VMAPLPPGIMPGP 232
P P +I P P ++ P+PP I P P
Sbjct: 537 PSPPEIAPSPPIVTPMPPIIYPSP 560
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 203 PLPPGIMPGPKLAKIDEEGLKLTN 274
P PP P + K+D +GLK TN
Sbjct: 804 PSPPPATASPLIGKVDNDGLKKTN 827
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 158 DNPPPADIKPP*VMAPLPPGIMPGPK 235
D+PPP + P V P PP P P+
Sbjct: 55 DSPPPPPLPTPTVTTPTPPPPPPAPR 80
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 317 WSSRTASGLGCFDSRSSTLNLPHRFSPTWDLA*F 216
W S++A C S S+TL P R S W + F
Sbjct: 1908 WRSKSACESHCVMSYSNTLQKPGRLSENWSMTNF 1941
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 164 PPPAD-IKPP*VMAPLPPGIMPGPKLAKIDEEGLK 265
PPPA I PP V A + P P P K + EGL+
Sbjct: 179 PPPATMIPPPTVTATITPLWPPPPPTKKEEHEGLQ 213
>10_08_0173 +
15414628-15414890,15415001-15415074,15416322-15416401,
15417186-15417231,15417334-15417368,15417751-15417771,
15418418-15419133,15419292-15419324,15419517-15419813,
15420213-15420659,15420738-15420886,15421408-15421697,
15421774-15421898,15422006-15422156
Length = 908
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPP----GIMPGPKLAKID 250
PPPA PP + P P G+ PG +A+ID
Sbjct: 35 PPPASATPPVRLPPSAPPPLVGVPPGVLMARID 67
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLP--PGIMPGPKLAKIDEEG 259
NPPP PP ++ P+P P ++PG A G
Sbjct: 236 NPPPPPPPPPSLLPPVPLLPPLIPGVPPASASRSG 270
>07_03_1223 +
24985730-24985916,24986008-24986039,24986790-24986879,
24987441-24987535,24987635-24987839,24988011-24988080,
24988564-24988642,24988859-24988926,24989114-24989202,
24989284-24989354,24989493-24989578,24989674-24989750
Length = 382
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 241 RQLGTWHNSR-RQRCHNLWRFNVRRWRIITPAGFLLPFAITFRLGLLVALRTGL 83
R L H SR R R H LW + +R+W P+ +LPFA F + + +RT L
Sbjct: 176 RSLSFSHLSRLRGRVHTLWEWVLRKW----PS--MLPFAQDF---IQLTIRTNL 220
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +2
Query: 245 IDEEGLKLTNVNRNNQALMQYAMTNFGTTALSPEDWKKCEDNFKLNLLYQDMLTKRQEVD 424
+DE+GLK+ NQ Q N A S D+KK + KL+L + + ++EVD
Sbjct: 24 LDEQGLKIAE----NQETSQ---KNRRRLAESTRDFKKASSDDKLSLFNSLLKSYQEEVD 76
Query: 425 RL 430
L
Sbjct: 77 NL 78
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 168 HRRTLNRHRLWHRCLRELCQVPSWRKSMRKV 260
HRR +H WH + E+ SWRK + KV
Sbjct: 35 HRRLRGQHG-WHWRVVEVASTGSWRKFVSKV 64
>04_04_1179 - 31512592-31515126
Length = 844
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 306 YCIRAWLFRFTFVNFKPSSSIF 241
YC+R F +TF NF + S+F
Sbjct: 99 YCLRLHFFPYTFGNFSGNDSLF 120
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +2
Query: 326 TTALSPEDW-KKCEDNFK 376
TT SP+DW KKCE +F+
Sbjct: 294 TTKTSPKDWSKKCEAHFR 311
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 329 WCRSWSSRTASGLGCFDSRSS 267
WC SW S+++ L C + SS
Sbjct: 318 WCASWCSKSSGDLHCTQASSS 338
>08_02_0024 - 11354491-11354915,11355747-11355894
Length = 190
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 356 SSNPLGLVPWCRSWSSRTASG-LGCFDSRSSTLNL 255
SSN G+ P + WSS ++ G LG R TL L
Sbjct: 100 SSNTSGMPPISKMWSSSSSRGDLGELTRRMDTLEL 134
>08_01_0059 - 394001-394708
Length = 235
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKI 247
PPP I PP AP+PP P P + I
Sbjct: 54 PPPPHISPP---APVPPPPSPPPHIVII 78
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKIDEEG 259
PPP PP P PPG P P A + G
Sbjct: 42 PPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,516
Number of Sequences: 37544
Number of extensions: 248964
Number of successful extensions: 902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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