Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C24
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.0  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   3.0  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 28   3.0  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)              27   5.3  
SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    27   7.0  
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)              27   7.0  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              27   9.2  

>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 71  HYHGYRCNIYCSYS 30
           HY+G  C++YCSY+
Sbjct: 68  HYYGRACDVYCSYT 81


>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1239

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 153 GVIILHRRTLNRHRLWHRCLRELCQVPSWRKSMRK 257
           GV  L +RTLN+HRL H    E  ++  W+   +K
Sbjct: 442 GVNFLDKRTLNKHRLNHEFQIER-ELTRWKSQSKK 475


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
           PPP  + PP V  P PP  MP P
Sbjct: 83  PPPIYMPPPPVYMPPPPVYMPPP 105


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 164 PPPADIKPP*VMAP--LPPGIMPGP 232
           PPPA   PP V+AP   PPG++P P
Sbjct: 179 PPPA---PPGVLAPPPAPPGVLPPP 200


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKIDEEGLKLTNVN 280
           PP A I PP ++  LPP  +P P +   +   +   N N
Sbjct: 400 PPQASIPPPTMIQTLPPPSVPPPPIGVPNRPSVLYPNNN 438


>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
          Length = 1156

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 338 SPE-DWKKCEDNFKLNLLYQDMLTKRQEVD 424
           SPE DW + ED  + N   + ++TKR +VD
Sbjct: 344 SPEIDWSQLEDPQRRNTFTKTIITKRVKVD 373



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 338 SPE-DWKKCEDNFKLNLLYQDMLTKRQEV 421
           SPE DW K ED  + N   + ++TKR +V
Sbjct: 594 SPEIDWSKLEDPQRRNTFTKTIITKRVKV 622


>SB_36422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 161 NPPPADIKPP*VMAPLPPGIMPGP 232
           NPP A   PP   APLPP + P P
Sbjct: 28  NPPEAPPLPP--FAPLPPPVPPPP 49


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 323 GTTALSPEDWKKCEDNFKLNLLYQDML 403
           GT+  SP DW  C+DN   N L +D+L
Sbjct: 644 GTSNNSPPDWPLCKDNPHRNTL-RDLL 669


>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
          Length = 391

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPP-GIMPGP 232
           PPP DI+PP V    PP  I P P
Sbjct: 299 PPPVDIQPPPVDIQQPPVDIQPPP 322



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPP-GIMPGP 232
           PPP DI+PP V    PP  I P P
Sbjct: 320 PPPVDIQPPPVDIQQPPVDIQPPP 343


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKIDEEG 259
           PPP    PP    P PP  MP P   ++  +G
Sbjct: 484 PPPFGPPPPFYRGPPPPRGMPPPPRQRMPSQG 515


>SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 138 RRNPAGVIILHRRTLNRHRLW 200
           RR P G+  LHR T+NR  ++
Sbjct: 387 RRGPPGIHSLHRLTMNRRNMF 407


>SB_53315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -3

Query: 226 WHNSRRQRCHNLWRFNVR-----RWRIITP--AGFLLPFAITFRLGLL 104
           W  S R    +LWR+NVR      WR +     G+L  +++ + +G L
Sbjct: 154 WRYSARYCTGHLWRYNVRYCTGYLWRYLARYLTGYLWRYSVRYCMGYL 201


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 AKIDEEGLKLTNVNRNNQALMQYAMTNFGTTALSPEDW 352
           AKID     ++N+  + +   +  +TN GTT ++  DW
Sbjct: 541 AKIDLRYDVISNLQGDGRYSAKLTLTNTGTTVITKGDW 578



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 AKIDEEGLKLTNVNRNNQALMQYAMTNFGTTALSPEDW 352
           AKID     ++N+  + +   +  +TN GTT ++  DW
Sbjct: 817 AKIDLRYDVISNLQGDGRYSAKLTLTNTGTTVITKGDW 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,473
Number of Sequences: 59808
Number of extensions: 257643
Number of successful extensions: 840
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)