Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C24
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.49 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 205 RCHNLWRFNVRRWRIITPAGFLLPFAITFRLGLLVALR 92
           RC   W      + I T   F+LP  I   L +L+A++
Sbjct: 210 RCSMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIK 247


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 185 PP*VMAPLPPGIMPGPKLAKIDEEGLKLTNVNRNNQALMQYAMTNFGTTALSP 343
           PP    P PP    GP  AK+D    K+ ++     A++    +   TT   P
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLD----KIFDIATKENAMLLSGRSQKSTTGPPP 386


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 316 QLRHHGTKPRGLEEM 360
           QL  HGT+PR  EE+
Sbjct: 51  QLPIHGTEPRSKEEI 65


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 161  NPPPADIKPP*VMAPLPPGIMPGPKLAKIDEEGLKLTNVNRNNQALMQ 304
            NPPP    P    AP  P I+P    A     GL+     + N A++Q
Sbjct: 1165 NPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGLQ---EQQRNAAMVQ 1209


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 324 PKLVIAYCIRAWLF 283
           PKL+  + +R W F
Sbjct: 157 PKLIAKHYLRTWFF 170


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 324 PKLVIAYCIRAWLF 283
           PKL+  + +R W F
Sbjct: 157 PKLIAKHYLRTWFF 170


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 324 PKLVIAYCIRAWLF 283
           PKL+  + +R W F
Sbjct: 157 PKLIAKHYLRTWFF 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,332
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)