Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C24
(444 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 32 0.20
At4g27630.2 68417.m03972 expressed protein 31 0.26
At4g27630.1 68417.m03971 expressed protein 31 0.26
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 31 0.46
At1g64990.1 68414.m07366 expressed protein contains similarity t... 30 0.81
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 1.9
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 1.9
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 2.5
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg... 28 3.3
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 28 3.3
At2g13270.1 68415.m01462 hypothetical protein 28 3.3
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 3.3
At3g24550.1 68416.m03083 protein kinase family protein contains ... 27 4.3
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 4.3
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 5.7
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont... 27 5.7
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 5.7
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 27 5.7
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 27 5.7
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 5.7
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 5.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 7.5
At3g32940.1 68416.m04174 expressed protein 27 7.5
At3g24460.1 68416.m03069 TMS membrane family protein / tumour di... 27 7.5
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 26 10.0
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 31.9 bits (69), Expect = 0.20
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPPGIMPGP 232
+PPPA + PP V AP P + P P
Sbjct: 145 SPPPAPVSPPPVQAPSPISLPPAP 168
>At4g27630.2 68417.m03972 expressed protein
Length = 467
Score = 31.5 bits (68), Expect = 0.26
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 89 WSVHVSHYHGYRCNIYCSY 33
W HV ++ GY C+IYC Y
Sbjct: 289 WKGHVQNFLGYACSIYCVY 307
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 31.5 bits (68), Expect = 0.26
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 89 WSVHVSHYHGYRCNIYCSY 33
W HV ++ GY C+IYC Y
Sbjct: 170 WKGHVQNFLGYACSIYCVY 188
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPPGIMPGP 232
+PPP I PP + +P PP I P P
Sbjct: 74 SPPPPPIYPPPIYSPPPPPIYPPP 97
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPPGIMPGPKL 238
+PPP I PP + +P P I P PK+
Sbjct: 87 SPPPPPIYPPPIYSPPPTPISPPPKV 112
>At1g64990.1 68414.m07366 expressed protein contains similarity to
putative G-protein coupled receptor GI:6649579 from
[Homo sapiens]
Length = 468
Score = 29.9 bits (64), Expect = 0.81
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 89 WSVHVSHYHGYRCNIYCSY 33
W HV + GY C+IYC Y
Sbjct: 290 WKGHVQNLLGYACSIYCVY 308
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP KPP V P PP + P P
Sbjct: 77 PPPYTPKPPTVKPPPPPYVKPPP 99
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPP-GIMPGPKL 238
NPPP PP + AP PP +P PKL
Sbjct: 146 NPPPPPESPPSLPAPDPPSNPLPPPKL 172
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPPGIMPGP 232
+PPP I PP +A PP + P P
Sbjct: 123 SPPPPAITPPPPLATTPPALPPKP 146
>At4g18890.1 68417.m02785 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 284
Score = 27.9 bits (59), Expect = 3.3
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -2
Query: 371 SYPHISSNPLG----LVPWCRSWSSRTASGLGCF--DSRSSTLNLPHRFSPTWDLA*FPE 210
S+P +NP G L+PW ++ SS + S L F +S S+ + P SPT D P+
Sbjct: 111 SFPS-PTNPFGDANSLIPWLKNLSSNSPSKLPFFHGNSISAPVTPPLARSPTRDQVTIPD 169
Query: 209 A 207
+
Sbjct: 170 S 170
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 161 NPPPADIKPP*VMAPLPPGIMPGP 232
+PPPAD+ PP PP +P P
Sbjct: 63 SPPPADLPPPPTPYYSPPADLPPP 86
>At2g13270.1 68415.m01462 hypothetical protein
Length = 378
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 332 PWCRSWSSRTASGLGCFDSRSSTLNL 255
PWCRS S GC ++ SS L++
Sbjct: 135 PWCRSTPSHIYETSGCDEAESSKLDI 160
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP+ PP V +P PP P P
Sbjct: 619 PPPSHSPPPPVYSPPPPTFSPPP 641
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 155 SDNPPPADIKPP*VMAPLPPGIMPGP 232
S +PPP+ PP + P PPG + P
Sbjct: 51 STSPPPSSPLPPSLPPPSPPGSLTPP 76
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAKI 247
PPP PP V +P PP + P A I
Sbjct: 721 PPPVHSPPPPVQSPPPPPVFSPPPPAPI 748
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP PP V +P PP P P
Sbjct: 650 PPPVHSPPPPVFSPPPPMHSPPP 672
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP PP V +P PP P P
Sbjct: 562 PPPVHSPPPPVFSPPPPVYSPPP 584
>At3g15410.1 68416.m01955 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596;
identical to leucine-rich repeat protein [Arabidopsis
thaliana] gi|2760084|emb|CAA76000
Length = 584
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 197 MAPLPPGIMPGPKLAKIDEEGLKLTNVNRNNQA 295
++ LP ++ KL+K+D EG KLT ++ N+ A
Sbjct: 149 ISSLPEDMVNCSKLSKLDVEGNKLTALSENHIA 181
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGPKLAK 244
PPP PP V +P PP P P K
Sbjct: 633 PPPVHSPPPPVYSPPPPVYSPPPPPVK 659
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 152 WSDNPPPADIKPP*VMAPLPPGIMPGP 232
+S PPP PP V +P PP P P
Sbjct: 585 YSPPPPPVHSPPPPVHSPPPPVHSPPP 611
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP PP V +P PP P P
Sbjct: 567 PPPVHSPPPPVHSPPPPVYSPPP 589
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP PP V +P PP P P
Sbjct: 596 PPPVHSPPPPVHSPPPPVYSPPP 618
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP PP V +P PP P P
Sbjct: 619 PPPVHSPPPPVFSPPPPVHSPPP 641
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 167 PPADIKPP*VMAPLPPGIMPGP 232
PPAD PP + LPP + P
Sbjct: 41 PPADSSPPPALPSLPPAVFSPP 62
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIMPGP 232
PPP ++PP ++ P PP + P P
Sbjct: 94 PPPVVVRPPPIIRP-PPVVYPPP 115
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 158 DNPPPADIKPP*VMAPLPPGIMPGP 232
++PPP + PP +P PP P P
Sbjct: 150 ESPPPESLPPPSPESPSPPSPEPPP 174
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 164 PPPADIKPP*VMAPLPPGIM--PGPKLAKIDEEGL 262
PP A++ PP PP + P PK K+DE L
Sbjct: 642 PPMAEMPPPPPPGEAPPPLPEEPEPKRQKLDESAL 676
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 152 WSDNPPPADIKPP*VMAPLPPGIMPGP 232
+S PPP PP V +P PP + P
Sbjct: 495 YSPPPPPPPPPPPPVYSPPPPPVYSSP 521
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 152 WSDNPPPADIKPP*VMAPLPPGIMPGP 232
+S PPP PP V +P PP P P
Sbjct: 449 YSPPPPPPPPPPPPVYSPPPPPPPPPP 475
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 365 PHISSNPLGLVPWC--RSWSSRTASG-LGCFDSRSSTLNLPH 249
PHI+S P GLVP + +SR G G +S+ + PH
Sbjct: 447 PHIASRPAGLVPAYPPTNTASRPFHGDFGYIPQQSNIITTPH 488
>At3g24460.1 68416.m03069 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 409
Score = 26.6 bits (56), Expect = 7.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 256 FLIDFRQLGTWH-NSRRQRCHNLWRF-NVRRWRIITPAGFLLPFAITFRLGLLVALRTGL 83
F++ LGT +S R R H+ W F + W +T FLLP +I G + G+
Sbjct: 99 FVMFLSTLGTSKTHSSRDRWHSGWWFVKLIMWPALTIIPFLLPSSIIHLYGEIAHFGAGV 158
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 152 WSDNPPPADIKPP*VMAPLPPGIMPGP 232
WS +PP PP +PLPP P P
Sbjct: 157 WSSDPPLPPPPPP-YPSPLPPPPSPSP 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,806,676
Number of Sequences: 28952
Number of extensions: 189489
Number of successful extensions: 780
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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