Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C23
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   1.2  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   1.2  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    27   2.2  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   2.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   3.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   5.0  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   5.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.0  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   5.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.7  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   6.7  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   6.7  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   6.7  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   8.8  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.8  

>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 423 YIVTGGLDCLVKVWTCENNKLEFCNSL 503
           + ++G LDC +++W+ +   + F N L
Sbjct: 364 FFLSGSLDCKLRLWSIKEKAVSFWNEL 390


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 345 AHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVW 464
           AHD  +   ++ N+  +GD     K Y++T G D L+KVW
Sbjct: 182 AHDRGV---NYVNYYPAGD-----KPYLITAGDDNLIKVW 213


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 IVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
           +  GG+D  +K+W   NN     + LKGH
Sbjct: 192 VFIGGIDGAIKIWDLRNNHCS--HVLKGH 218


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 423 YIVTGGLDCLVKVWTCENNKL 485
           Y V+G LDC +++W+   +K+
Sbjct: 310 YFVSGSLDCKIQLWSILRHKI 330


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 278  LTCKRECNDD*HYSFI-IIQKRECTRRS--HIQLLMDK 382
            L C+ ECND   Y  I IIQ     R++  H ++++D+
Sbjct: 1340 LLCQEECNDQAPYGVIGIIQGSSLLRKTDVHSEIILDE 1377


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 339  ENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVW 464
            EN+ ++ + SC +T  N    S+   K+  +TG  D ++++W
Sbjct: 2428 ENSDENILCSCFYTGAN----SEWLHKNLFITGHPDGIIRIW 2465


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 45  PFVFYSLKRLCSCFNKNNILPLFL 116
           PF+ Y  KR   CF+KN  L L +
Sbjct: 125 PFLIYVKKRFAECFDKNPDLCLIV 148


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 306 TSTIHSLLFKKENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWT 467
           TSTI  +   + N            N  AS D+  +   YI++   DC +++W+
Sbjct: 486 TSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN-SMPPYIISSSRDCTIRLWS 538


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 408 QASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKG 509
           +A KS +    L C++ V   E N   FCN  KG
Sbjct: 413 EAKKSKLENNILKCVMIVLPKEFNPHSFCNQYKG 446


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 291 ESVMTTSTIHSLLFKKENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVW 464
           + V+   T    L ++ + H++ +YS ++     S D K     Y+V+G LD  +K+W
Sbjct: 438 DKVIRIWTSSGTLVEQLHGHEESVYSVAF-----SPDGK-----YLVSGSLDNTIKLW 485


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 420 SYIVTGGLDCLVKVWTCE 473
           S I TGGLD  +++W+ E
Sbjct: 31  SRIATGGLDGTIRIWSTE 48


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 423 YIVTGGLDCLVKVWTCENNK 482
           Y+VT G D L+KVW     K
Sbjct: 279 YMVTAGADSLLKVWDLRTYK 298


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 429 VTGGLDCLVKVWTCENNKLEFCNSLKGH 512
           V+GG D  V VW  ++ KL F  SL GH
Sbjct: 69  VSGGDDYKVNVWNYKSRKLLF--SLCGH 94


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 426 IVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
           + T   D  +KV++ ENN+     +L+GH
Sbjct: 24  LATCSSDQTIKVFSIENNQQTLLETLRGH 52



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 396 GDSKQASKSYIVTGGLDCLVKVWTCEN--NKLEFCNSLKGH 512
           G S  A    + T G D LVK+W  +   N     ++L GH
Sbjct: 164 GQSPAAGPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGH 204


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 435 GGLDCLVKVWTCENNKLEFCN 497
           G ++C +  W CE+N +  C+
Sbjct: 66  GEINCCLNGWLCESNNILVCD 86


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 420 SYIVTGGLDCLVKVW 464
           +YI TGG+D  V++W
Sbjct: 117 TYIATGGMDSQVRLW 131


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 417 KSYIVTGGLDCLVKVWTCE 473
           KSY+++  LD  ++VW  E
Sbjct: 316 KSYLISSSLDQTIRVWDLE 334


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 408 QASKSYIVTGGLDCLVKVWTCENN 479
           Q   +  VTGG D +VKVW    N
Sbjct: 555 QPKGNLFVTGGSDGIVKVWDLRLN 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,258
Number of Sequences: 5004
Number of extensions: 37586
Number of successful extensions: 109
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)