Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C23
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0560 + 34726338-34727243 34 0.077
07_03_0971 + 23038409-23039134,23040321-23040611 31 0.41
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 31 0.54
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844... 29 1.7
07_01_0972 - 8176013-8176960 29 2.2
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 29 2.9
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 29 2.9
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 29 2.9
11_06_0627 + 25633537-25633884,25635246-25635869 28 3.8
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 28 3.8
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 3.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 27 6.7
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 8.8
>03_06_0560 + 34726338-34727243
Length = 301
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 339 ENAHDDPIYSCSWTNFNASGDSKQASK--SYIVTGGLDCLVKVWTCEN 476
E AH + + SW A G + + +V+GG DC+VKVW N
Sbjct: 147 EQAHPVGVMAVSWAPATALGSIVGSGELVQKLVSGGFDCVVKVWAFVN 194
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 31.5 bits (68), Expect = 0.41
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 378 TNFNASGDSKQASKSYIVTGGLDCLVKVWTCENNK 482
TNF S + + S + +GG DC V++W ++ +
Sbjct: 132 TNFVFSANFNPQTNSTVASGGFDCTVRIWDVKSGR 166
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 405 KQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
K I TG DCL+KVW KL +L+GH
Sbjct: 272 KWGGDGLIYTGSEDCLIKVWETSQGKL--VKTLQGH 305
>10_05_0036 +
8443957-8444112,8446063-8446129,8446685-8446743,
8446855-8446930,8447118-8447189,8447326-8447413,
8447489-8447744,8447934-8448049,8448247-8448470,
8448685-8448716,8448882-8449018,8449200-8449289,
8449383-8449557
Length = 515
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 304 RLALFIHYYSKKRMHTTIPYTVAHGQIL 387
R ++ +H Y KK T PY VAH IL
Sbjct: 217 RCSVLLHLYCKKGNSGTEPYIVAHNMIL 244
>07_01_0972 - 8176013-8176960
Length = 315
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 339 ENAHDDPIYSCSWTNFNASGDSKQASKSY--IVTGGLDCLVKVWTCENN--KLE 488
E AH + + SW A G + + +V+GG D +VKVW N KLE
Sbjct: 147 ERAHPVGVTAISWAPATALGSLAGSGELVYKLVSGGFDSVVKVWGFVNGGWKLE 200
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKL 485
Y++TGG D LV+VW+ ++ K+
Sbjct: 395 YLLTGGEDDLVQVWSMDDRKI 415
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 405 KQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
K I TG DC +KVW KL +L+GH
Sbjct: 221 KWGGDGLIYTGSEDCSIKVWETSQGKL--VKTLQGH 254
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 348 HDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSL 503
H+D +YS W D + I++ +D ++ +W E N + NS+
Sbjct: 316 HEDWVYSVEWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSV 367
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +3
Query: 339 ENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
+ AH++ I++ +W + D + A+ ++TG LD V++W ++ + +GH
Sbjct: 10 DGAHEESIWAAAWV---PAADHRPAA--LLLTGALDETVRLWAPDDLASAAASPSRGH 62
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 408 QASKSYIVTGGLDCLVKVWTCEN 476
+ ++ YI+TG LD ++W C++
Sbjct: 574 RGNQQYIITGSLDKTARIWDCKS 596
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 423 YIVTGGLDCLVKVW 464
Y+ TGG DC+V++W
Sbjct: 269 YLATGGEDCIVRIW 282
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNK 482
+KS +V+GG D LVK+W ++ +
Sbjct: 279 TKSLLVSGGKDYLVKLWDAKSGR 301
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 470 ASPHFHQTVKSSRHYVTLRGLF*IPRSIKIC 378
ASP + V+ R+ LRGLF R I++C
Sbjct: 62 ASPRPEEAVRKRRNREELRGLFECYRRIRLC 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,310,434
Number of Sequences: 37544
Number of extensions: 191410
Number of successful extensions: 385
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -