Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C23
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)                34   0.079
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               27   6.9  
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     27   9.1  
SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)                  27   9.1  
SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)                   27   9.1  
SB_46773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    27   9.1  

>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 33.9 bits (74), Expect = 0.079
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 339 ENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTC 470
           E+AH+D I++ +W      G +++     I+TG +D +VK W C
Sbjct: 3   EHAHEDSIWTVAW------GSNERDCTESILTGSVDDMVKCWRC 40


>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 402 SKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
           S Q   +YIV+G LD  ++VW  E    +  ++L GH
Sbjct: 484 SLQFDGTYIVSGSLDTSIRVWHAETG--QCLHTLVGH 518


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 417 KSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
           K Y+++G  D LVK+W  +N       +L+GH
Sbjct: 97  KPYLISGADDRLVKIWDYQNKTC--VQTLEGH 126


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 469  QVHTFTKQSSPPVTM*LLEACFESPEALKFVHEQLYMG 356
            QV    K  SPP +   L+ CFE    L+F  EQ  +G
Sbjct: 989  QVLLSIKLMSPPPSQPHLKKCFEGIARLEFTEEQEVVG 1026


>SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)
          Length = 338

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 414 SKSYIVTGGLDCLVKVW 464
           + SY+VTG  D L+KVW
Sbjct: 67  TNSYLVTGDADGLIKVW 83


>SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)
          Length = 614

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 414 SKSYIVTGGLDCLVKVW 464
           + SY+VTG  D L+KVW
Sbjct: 67  TNSYLVTGDADGLIKVW 83


>SB_46773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 297 VMTTSTIHSLLFKKENAHDDPIYSCSWTNFNASGDSKQASKS 422
           V TTST+H +++K ++  DD     S +  +   D K  SKS
Sbjct: 26  VYTTSTVH-IIYKSDDDSDDDSDDKSDSKSDDDSDDKSDSKS 66


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 411  ASKSYIVTGGLDCLVKVW 464
            AS   IVT G DC++++W
Sbjct: 1329 ASNDVIVTSGGDCVIRIW 1346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,156
Number of Sequences: 59808
Number of extensions: 251101
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)