Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C23
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 32 0.20
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.34
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 31 0.46
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 30 0.80
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 1.4
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 1.8
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 2.4
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 2.4
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 28 3.2
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 28 3.2
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 4.2
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 27 5.6
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 27 5.6
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 27 5.6
At1g19070.1 68414.m02373 F-box family protein similar to putativ... 27 7.4
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 27 9.8
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 27 9.8
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 27 9.8
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 27 9.8
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 396 GDSKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
GD + A + ++G DCLVK+W E +LKGH
Sbjct: 862 GDREDAG--FFISGSTDCLVKIWDPSLRGSELRATLKGH 898
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
+KS +V+GG D LVK+W + + E C SL GH
Sbjct: 279 TKSLLVSGGKDQLVKLWDTRSGR-ELC-SLHGH 309
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 339 ENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
ENAH+D +++ +W + + + ++TG LD VK+W ++L+ + GH
Sbjct: 10 ENAHEDSVWAATWV------PATEDRPALLLTGSLDETVKLW--RPDELDLVRTNTGH 59
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKL 485
YI+TGG D LV+VW+ E+ K+
Sbjct: 359 YILTGGEDDLVQVWSMEDRKV 379
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKL 485
Y++TGG D LV+VW+ E+ K+
Sbjct: 359 YLLTGGEDDLVQVWSMEDRKV 379
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 405 KQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
K I TG DC +K+W KL LKGH
Sbjct: 248 KWGGDGIIYTGSQDCTIKMWETTQGKL--IRELKGH 281
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKLE 488
S S IVT G DC +VW + +LE
Sbjct: 287 SDSLIVTAGEDCTCRVWGVDGTQLE 311
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKLE 488
S S IVT G DC +VW + +LE
Sbjct: 287 SDSLIVTAGEDCTCRVWGVDGTQLE 311
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKLEFCNSLKGH 512
Y+ TGG+DC V +W + N LK +
Sbjct: 220 YLATGGVDCHVHLWDIRTREHVQVNKLKNN 249
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 28.3 bits (60), Expect = 3.2
Identities = 8/31 (25%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 396 GDSKQASKSYI-VTGGLDCLVKVWTCENNKL 485
GD+ + S++ ++G +DC +++W E+ +
Sbjct: 541 GDANGCNSSHVLISGSMDCTIRIWDLESGNV 571
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 318 HSLLFKKENAHDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTCENN 479
H L+ K E AH I++CSW F T D VK+W+ EN+
Sbjct: 686 HKLMAKVE-AHKRIIWACSWNPFG----------HQFATSSRDKTVKIWSVEND 728
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKL 485
S+ +I++GG DC ++W+ ++ +L
Sbjct: 399 SERFILSGGDDCYTRIWSIKSGQL 422
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKL 485
++V+GGLD +VKVW KL
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKL 176
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 423 YIVTGGLDCLVKVWTCENNKL 485
++V+GGLD +VKVW KL
Sbjct: 105 WVVSGGLDNVVKVWDLTAGKL 125
>At1g19070.1 68414.m02373 F-box family protein similar to putative
non-LTR retroelement reverse transcriptase GI:3738337
from [Arabidopsis thaliana] ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 83
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 234 LNWLT*SVICWVLLF*PVKESVMTT 308
+N L+ +IC +L F P KES +T+
Sbjct: 4 INGLSDEIICHILSFLPTKESALTS 28
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKLE 488
S S +V+ G D ++VW C ++ +E
Sbjct: 113 SSSVVVSAGFDRSLRVWDCRSHSVE 137
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCENNKLEFC-NSLKGH 512
S Y++TG D LVKVW+ + +C S +GH
Sbjct: 256 SGRYVITGSDDRLVKVWSMDT---AYCLASCRGH 286
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 348 HDDPIYSCSWTNFNASGDSKQASKSYIVTGGLDCLVKVWTCENNKLEFCNSLK 506
H + + SW F + Q +VTG D VK+W +NK + NS++
Sbjct: 322 HSSWVSTMSWGIFGCDSSNPQV---VLVTGSCDGSVKIWM--SNKEDLQNSVE 369
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 414 SKSYIVTGGLDCLVKVWTCE 473
S Y++TG D LVK+W+ E
Sbjct: 316 SGRYVITGSDDRLVKIWSME 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,904,501
Number of Sequences: 28952
Number of extensions: 177957
Number of successful extensions: 456
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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