Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C22
         (378 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.58 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   5.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   9.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 182 ANCTTTYCLCTH 147
           +NC   YC CTH
Sbjct: 496 SNCENEYCECTH 507


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 198 LEHQACQLHHDVLSLYALTSSGLLVQFQEVSAGKF*GIQYPHLLNTS 58
           ++H    + +D+ SLY +    L+V +      +F  +Q    + TS
Sbjct: 156 IDHTESNIINDMCSLYYILQITLIVNYALALKNRFKELQKYLKIETS 202


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +3

Query: 156 ETVRRGAVGRPDAPARTAEDRSAYRRAPPAG 248
           + +  G++G P +P     D S   +  P G
Sbjct: 12  QNLSMGSLGAPQSPLDMKPDASTLGQFSPQG 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,762
Number of Sequences: 336
Number of extensions: 1504
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)