Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C22
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    94   8e-21
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    90   1e-19
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.42 
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   1.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   1.7  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   1.7  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   3.9  
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    25   3.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   5.2  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   5.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   5.2  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   6.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   9.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    24   9.1  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 93.9 bits (223), Expect = 8e-21
 Identities = 52/105 (49%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = +3

Query: 9   LKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRP 188
           L SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP
Sbjct: 49  LDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRP 105

Query: 189 DAPARTAEDRSAYRRAPPAGAPHDKKAD-VGPGSADVEFRGGFGR 320
           +   R++   + YRRA       +KK D   PG     FRGGFGR
Sbjct: 106 EPRERSSAADAGYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 50/104 (48%), Positives = 60/104 (57%)
 Frame = +3

Query: 9   LKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRP 188
           L SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP
Sbjct: 49  LDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRP 105

Query: 189 DAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGR 320
           +   R + D + YRRA        K     P      FRGGFGR
Sbjct: 106 EPRERASAD-AGYRRA------EKKDEGAAPSGFAPSFRGGFGR 142


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 175 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 276
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 325 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 188
           +PLP PP NS+     P SA               +++S V +G+S
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 267  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 91
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 90   GIQYPHLLNTS 58
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 183 RPDAPARTAEDRSAYRRAPPAGAPH 257
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 81  IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 185
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 165 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 308
           RRG V   D     A     Y R AP +G       D G G  D ++RG
Sbjct: 37  RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +3

Query: 111 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 254
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +3

Query: 111 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 287
           P    P+    S R  T     V  P +PAR     SAY  APPA G  +      G  S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338

Query: 288 ADVEFRG 308
           + +   G
Sbjct: 339 SSIPSSG 345


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 114 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 221
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -3

Query: 322 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVRTD 143
           P+P  P++ + A+P P S  LS               SAV   +S +P A    VS   D
Sbjct: 315 PVPMSPISISPAKPSPQSPKLS--------------QSAVGHPSSSIPAAAMHKVSYSDD 360

Query: 142 LFR 134
           L R
Sbjct: 361 LMR 363


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 62  PVKMPPCELFLNISS 18
           P  +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 APARTAEDRSAYRRAPPAGA-PHDKKADVGPGSADVEFRGGFGRG 323
           AP   +E      R P +   PHD+ A+VG  S   +F GG   G
Sbjct: 110 APPSLSEPSYVMARTPSSSPYPHDR-AEVGTKSLSAQF-GGMSLG 152


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 334 GADRPLPKPPLNSTSAEPGPT 272
           G +RPLP    NS    PGPT
Sbjct: 27  GKNRPLPGWDPNSEYFRPGPT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,100
Number of Sequences: 5004
Number of extensions: 24057
Number of successful extensions: 107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)